Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001542-TA|BGIBMGA001542-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif)
(470 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 82 2e-16
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 50 5e-07
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 47 5e-06
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 47 7e-06
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 46 1e-05
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 46 2e-05
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 46 2e-05
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 45 2e-05
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 45 3e-05
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 43 1e-04
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 42 1e-04
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 42 2e-04
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 41 4e-04
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 41 4e-04
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 41 4e-04
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 40 0.001
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 36 0.009
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 34 0.037
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 34 0.037
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 33 0.086
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 33 0.11
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 32 0.15
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 32 0.20
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 32 0.20
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 31 0.26
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 31 0.26
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 31 0.35
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 30 0.61
SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces pomb... 30 0.80
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 29 1.1
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 29 1.1
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 28 2.4
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2... 28 3.2
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 28 3.2
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 27 4.3
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar... 27 4.3
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 27 5.6
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 7.5
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 26 9.9
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc... 26 9.9
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 26 9.9
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 81.8 bits (193), Expect = 2e-16
Identities = 54/210 (25%), Positives = 95/210 (45%), Gaps = 18/210 (8%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 99
++V N+ Y+ RW ELK+ F +VG+V E+L +G ++GC I+E++ E + A+ +
Sbjct: 68 VYVGNLSYQVRWFELKE-FMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIKTL 126
Query: 100 HRYELNGRKLVLKEETGNERRMHTSRPQHREGRNNRDDKDNWGINKPREPENLNTYGLSL 159
+ GR + ++E+ R +S N +D EP+ G
Sbjct: 127 SNQKFMGRLVYIREDREQNARFGSSSVSPSASSNGKDS----------EPDRQLFVGNVS 176
Query: 160 QFLESINVQPPLVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIE 219
+ P + L Y +K++F+ AG V D+ ++++G SRG ++
Sbjct: 177 SISNPLYSFPRTL-------LPYNVRWQDLKDLFRQAGSVIRADIQMNQEGRSRGIGIVV 229
Query: 220 YDHPVEAVQAISMFDKQMLYERRMTVRMDR 249
EA+ AI M R + VR+DR
Sbjct: 230 MSSMKEAMHAIQMLHNTDFMGRTLEVRLDR 259
Score = 48.0 bits (109), Expect = 3e-06
Identities = 26/77 (33%), Positives = 39/77 (50%)
Query: 173 KKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEAVQAISM 232
++V+V NL Y+ ++KE G V N ++ +G S+G A+IEY EA AI
Sbjct: 66 RRVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIKT 125
Query: 233 FDKQMLYERRMTVRMDR 249
Q R + +R DR
Sbjct: 126 LSNQKFMGRLVYIREDR 142
Score = 41.5 bits (93), Expect = 2e-04
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 99
++V N+P+ L DLF + +G V + + +G+++G G+V+F N ++ +
Sbjct: 282 IYVGNLPWATSDRNLLDLFTD-IGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKL 340
Query: 100 HRYELNGRKLVL 111
+ Y GR L L
Sbjct: 341 NGYRYGGRPLQL 352
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 50.4 bits (115), Expect = 5e-07
Identities = 37/120 (30%), Positives = 62/120 (51%), Gaps = 14/120 (11%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLT-DDSGKARGCGIVEFTNTEAMKKALFV 98
LFV N+ +E +LK+ F + VG + V L+T +D+GK +G G V+F + + KA+ +
Sbjct: 230 LFVGNLDFETTDADLKEHFGQ-VGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMKAMEL 288
Query: 99 MHRYELNGRKLVLKEETGNERRMHTSRPQHREGRNN------RDDKDNWGINKPREPENL 152
H N +L E+ +RM P R GR N ++DK N+ + +P ++
Sbjct: 289 GH----NSWRLEYGED--RSKRMRNKSPMARSGRFNDAESLGQEDKPNFKRARKIDPRSV 342
Score = 39.9 bits (89), Expect = 7e-04
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 145 KPREPENLNTYGLSLQFLESINVQPPLVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDL 204
+P +P N + S+Q S +P + +FV NLD++ A +KE F G++R + L
Sbjct: 205 RPSKPANTLSKTASIQ---SSKKEPSSI--LFVGNLDFETTDADLKEHFGQVGQIRRVRL 259
Query: 205 AVDKD-GNSRGFAVIEY 220
+D G +GF +++
Sbjct: 260 MTFEDTGKCKGFGFVDF 276
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 47.2 bits (107), Expect = 5e-06
Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 99
L VSNI + ++K +F E GD+ +V L DD +++G G +++ N + + AL M
Sbjct: 342 LCVSNIHFNLTDEDVKAIF-EPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKM 400
Query: 100 HRYELNGRKL 109
+ ++L GR +
Sbjct: 401 NGFDLAGRNM 410
Score = 41.5 bits (93), Expect = 2e-04
Identities = 32/140 (22%), Positives = 59/140 (42%), Gaps = 3/140 (2%)
Query: 100 HRYELNGRKLVLKEETGNERRMHTSRPQHREGRNNRDDKDNWGINKPREPENLNTYGLSL 159
HRY+ R RR + R ++ D +D + R E +
Sbjct: 169 HRYDDYSRSPPYSSRHSRSRRRYEERSSRSSRAHDYDYEDLR--DDDRSHERKRSRSRPR 226
Query: 160 QFLESINVQPPLVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDK-DGNSRGFAVI 218
+ ++ + + VFV+ L + ++ + F+ AG VR+ + DK G S+G A +
Sbjct: 227 ERSSKLSEEERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYV 286
Query: 219 EYDHPVEAVQAISMFDKQML 238
E+ H AI++ K++L
Sbjct: 287 EFCHEDSVQAAIALSGKRLL 306
Score = 39.5 bits (88), Expect = 0.001
Identities = 19/72 (26%), Positives = 35/72 (48%)
Query: 174 KVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEAVQAISMF 233
++ V+N+ + +K +F+ G + + L D S+GF I+Y +P+ A A+
Sbjct: 341 RLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKM 400
Query: 234 DKQMLYERRMTV 245
+ L R M V
Sbjct: 401 NGFDLAGRNMRV 412
Score = 31.9 bits (69), Expect = 0.20
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDD-SGKARGCGIVEFTNTEAMKKAL 96
+FVS + EL D F E+ G V +++ D SG+++G VEF + ++++ A+
Sbjct: 242 VFVSQLANRLTSRELYDFF-EQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAI 298
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 46.8 bits (106), Expect = 7e-06
Identities = 29/106 (27%), Positives = 55/106 (51%), Gaps = 5/106 (4%)
Query: 144 NKPREPENLNTYGLSLQFLESINVQPPLVKKVFVANLDYKADQAKIKEVF-KMAGKVRNI 202
NKP+ +N + L+S+ + K+ V+NL +A++KE+F K G + +
Sbjct: 29 NKPKPTKNAKPAVNTASALKSVISEE---SKIIVSNLPTDVTEAQVKELFVKSIGPCKRV 85
Query: 203 DLAVDKDGNSRGFAVIEYDHPVEAVQAISMFDKQML-YERRMTVRM 247
LA +G S+G A I + P +A +A ++ +++ R+M V +
Sbjct: 86 SLAYGPNGRSKGIATIIFSRPGDATRAYEQYEGRLVDGTRKMKVEI 131
Score = 31.9 bits (69), Expect = 0.20
Identities = 13/48 (27%), Positives = 27/48 (56%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFT 87
+ VSN+P + ++K+LF + +G V L +G+++G + F+
Sbjct: 57 IIVSNLPTDVTEAQVKELFVKSIGPCKRVSLAYGPNGRSKGIATIIFS 104
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 46.0 bits (104), Expect = 1e-05
Identities = 27/94 (28%), Positives = 50/94 (53%), Gaps = 2/94 (2%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTD-DSGKARGCGIVEFTNTEAMKKALFV 98
+FV NIPY+ ++ ++F + VG V +L+ D ++G +G G EF ++E A+
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQ-VGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRK 67
Query: 99 MHRYELNGRKLVLKEETGNERRMHTSRPQHREGR 132
++ EL RK+ ++ + + RR + R R
Sbjct: 68 LNNSELGPRKIRVEFPSNDPRRNQSYEYTERTDR 101
Score = 38.3 bits (85), Expect = 0.002
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 175 VFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKD-GNSRGFAVIEYDHPVEAVQAISMF 233
VFV N+ Y + ++ E+F G V+ L +D + G+ +G+ E+ A+
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68
Query: 234 DKQMLYERRMTV 245
+ L R++ V
Sbjct: 69 NNSELGPRKIRV 80
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 45.6 bits (103), Expect = 2e-05
Identities = 31/103 (30%), Positives = 48/103 (46%), Gaps = 3/103 (2%)
Query: 173 KKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDK-DGNSRGFAVIEYDHPVEAVQAIS 231
+ V+V N+DY +++ F G V + + DK G+ +GFA IE+ P A+
Sbjct: 55 QSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNAL- 113
Query: 232 MFDKQMLYERRMTVRMDRGVTDKGELRLPEGLKGIGMGLGPNG 274
+ + ML+ER + V R G R +G G G G G
Sbjct: 114 LLNGSMLHERPLKVTPKR-TNVPGMSRGRGRGRGRGRGRGRGG 155
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 45.6 bits (103), Expect = 2e-05
Identities = 21/71 (29%), Positives = 39/71 (54%)
Query: 175 VFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEAVQAISMFD 234
VF+ NLD D + + F GK+ + +AVD+ GN++G+ + +D A AI +
Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVN 229
Query: 235 KQMLYERRMTV 245
+L ++++ V
Sbjct: 230 GMLLNDKKVYV 240
Score = 40.7 bits (91), Expect = 4e-04
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 99
LF+ N+ E LK F G + +++TD+ GK++G G V +T E KA+ M
Sbjct: 366 LFIKNLQDEVDDERLKAEFSA-FGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEM 424
Query: 100 HRYELNGRKL 109
++ L G+ L
Sbjct: 425 NQRMLAGKPL 434
Score = 35.9 bits (79), Expect = 0.012
Identities = 20/85 (23%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 175 VFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEAVQAI-SMF 233
V++ NLD + + + ++F G++ ++ L D++ RGF + Y + A +A+ +
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELN 322
Query: 234 DKQMLYERRMTVRMDRGVTDKGELR 258
DK+ ++ R + + ELR
Sbjct: 323 DKEYKGKKLYVGRAQKKHEREEELR 347
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 45.2 bits (102), Expect = 2e-05
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 175 VFVANLDYKADQAKIKEVFKMAGKVRNIDLAVD-KDGNSRGFAVIEYDHPVEAVQAISMF 233
V+V N+ Y+ + ++ ++FK +G V++ L +D + G +G+ EY P A A+
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNL 66
Query: 234 DKQMLYERRMTV 245
+ RR+ V
Sbjct: 67 NNYDAGTRRLRV 78
Score = 42.7 bits (96), Expect = 1e-04
Identities = 24/82 (29%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTD-DSGKARGCGIVEFTNTEAMKKALFV 98
++V NIPYE ++ D+FK+ G V +L+ D +SG+ +G G E+ + A+
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQS-GPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRN 65
Query: 99 MHRYELNGRKLVLKEETGNERR 120
++ Y+ R+L + T ++ R
Sbjct: 66 LNNYDAGTRRLRVDFPTADQIR 87
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 44.8 bits (101), Expect = 3e-05
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 1/104 (0%)
Query: 143 INKPREPENLNTYGLSLQFLESINVQPPLVKKVFVANLDYKADQAKIKEVFKMAGKVRNI 202
+N R+ E LN L F S + +++ NLD+ ++ I VF G+ +I
Sbjct: 1 MNSIRQIERLNEQELDKPFSSSWHQDYSDSAYIYIGNLDFDLNEDDILCVFSEFGEPVDI 60
Query: 203 DLAVDKD-GNSRGFAVIEYDHPVEAVQAISMFDKQMLYERRMTV 245
+L DK+ G S+GFA ++Y+ V A+ L +R + V
Sbjct: 61 NLVRDKETGKSKGFAFLKYEDQRSTVLAVDNMTNVKLLDRLVRV 104
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 42.7 bits (96), Expect = 1e-04
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 175 VFVANLDYKADQAKIKEVFKMAGK-VRNIDLAVDKDGNSRGFAVIEYDHPVEAVQAISMF 233
+FV NLD D+ + + F G+ V+ +A D++G S+G+ + YD A AI
Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAM 160
Query: 234 DKQMLYERRMTVRMDRGVTDKGE 256
+ Q L + +TV KGE
Sbjct: 161 NNQFLMNKPITVSYAFKREGKGE 183
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 42.3 bits (95), Expect = 1e-04
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 99
L V N+ + W +LKD+ + K G+ + TD + G G+VEF+ E M+ AL +
Sbjct: 100 LIVENLSEDVSWQDLKDVMR-KAGEPTF----TDAHRENPGAGVVEFSTEEDMRNALTSL 154
Query: 100 HRYELNGRKLVLKEE 114
+ + G+ + L+E+
Sbjct: 155 NGEVIKGQAVTLRED 169
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 41.5 bits (93), Expect = 2e-04
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 175 VFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDK-DGNSRGFAVIEYDHP-VEAVQAISM 232
+FV NL + ++ FK AG+V ++ + DK G +G+A +E+ +P + +
Sbjct: 94 LFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEFINPKTDVISKALK 153
Query: 233 FDKQMLYERRMTVRMDRGVTDKGELRL 259
F + ER++ + + G K E R+
Sbjct: 154 FHHTIYKERKINIELTAGGGGKTEARM 180
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 40.7 bits (91), Expect = 4e-04
Identities = 22/74 (29%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 175 VFVANLDYK--ADQAKIKEVFKMAGKVRNIDLAVDKDGN-SRGFAVIEYDHPVEAVQAIS 231
+FV NLD + +++E+F G++++ LA S+G+ + + HP EAVQAI+
Sbjct: 421 LFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAIN 480
Query: 232 MFDKQMLYERRMTV 245
+ + ++R+ V
Sbjct: 481 TLNGVLFGKKRLFV 494
Score = 28.7 bits (61), Expect = 1.8
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
Query: 54 LKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFV--MHRYELNGRKLVL 111
+K+L VG+ +E L G+ + C + + +TE K FV H +E L
Sbjct: 423 VKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAINTL 482
Query: 112 KEETGNERRMHTSRPQHREGRNNR 135
++R+ + + RE R R
Sbjct: 483 NGVLFGKKRLFVNYAEKREDRKKR 506
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 40.7 bits (91), Expect = 4e-04
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 175 VFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSR-GFAVIEYDHPVEAVQAISMF 233
V+V NL + + +I +F G++R I + VD+ + GF +EY +A+ ++
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSLKYI 93
Query: 234 DKQMLYERRMTVRMDRG 250
+ L ER + +D G
Sbjct: 94 SRTSLDERIIRADLDHG 110
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 40.7 bits (91), Expect = 4e-04
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Query: 173 KKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDK-DGNSRGFAVIEYDHPVEAVQAIS 231
K +F++ L Y ++ I+ F G + I + +K G S G+A + ++ + A
Sbjct: 100 KTMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYK 159
Query: 232 MFDKQMLYERRMTVRMDRGVTDKGEL--RLPEGLKG 265
ML RR+ V ++RG T KG L +L GL G
Sbjct: 160 ASAGLMLNGRRIVVDVERGRTVKGWLPRKLGGGLGG 195
Score = 31.5 bits (68), Expect = 0.26
Identities = 19/78 (24%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDD-SGKARGCGIVEFTNTEAMKKALFV 98
+F+S + Y+ + ++++ F + G + + ++ + +GK+ G V F +K A
Sbjct: 102 MFLSRLSYDTKESDIEREFT-RYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKA 160
Query: 99 MHRYELNGRKLVLKEETG 116
LNGR++V+ E G
Sbjct: 161 SAGLMLNGRRIVVDVERG 178
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 39.5 bits (88), Expect = 0.001
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 174 KVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVD-KDGNSRGFAVIEYDHPVEAVQAISM 232
K++++NL + ++ E+ K G + + L + DG+S+GF E+ +P +A AIS
Sbjct: 311 KIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAISG 370
Query: 233 FDKQMLYERRM 243
D + Y ++
Sbjct: 371 LDGKDTYGNKL 381
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 36.3 bits (80), Expect = 0.009
Identities = 27/121 (22%), Positives = 50/121 (41%), Gaps = 4/121 (3%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 99
+ V NIP+ L D FK+ Y D+G RG F E + + +
Sbjct: 204 IVVKNIPFSLEKDTLLDHFKQLGIPRPYAFNYHYDNGIFRGLAFANFYRPEEAQVVVQTL 263
Query: 100 HRYELNGRKLVLKEE----TGNERRMHTSRPQHREGRNNRDDKDNWGINKPREPENLNTY 155
+ YE+NGR+L ++ + ++ ++ + E R + + ++ + NLN
Sbjct: 264 NGYEINGRRLRVEWKRQLPAAEREKVEKAKKRQAEERRRKQQYKMFEVSFTDQGLNLNDT 323
Query: 156 G 156
G
Sbjct: 324 G 324
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 34.3 bits (75), Expect = 0.037
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 175 VFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGN-SRGFAVIEYDHPVEAVQAISMF 233
VFV NL ++A++ + F G + + + D N +GFA I++ + +A+ +
Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALLLN 331
Query: 234 DKQMLYERRMTVRMDRGVTDKGELRLPEG 262
+K+M R + + + K R G
Sbjct: 332 EKKMPEGRTLRIMRAKSTKPKSITRSKRG 360
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 34.3 bits (75), Expect = 0.037
Identities = 18/68 (26%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 175 VFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDK-DGNSRGFAVIEYDHPVEAVQAISMF 233
+ V + +A + +++++F G V+N+ L +D+ G +G+A+IEY +A +A+
Sbjct: 12 IIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAVDEK 71
Query: 234 DKQMLYER 241
+ +L E+
Sbjct: 72 NLSLLDEK 79
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 33.1 bits (72), Expect = 0.086
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 174 KVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKD-GNSRGFAVIEYDHPVEAVQA 229
K+FV + + + + F G+V + L +DKD G RGF + Y++ AV+A
Sbjct: 248 KMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENE-SAVEA 303
Score = 32.7 bits (71), Expect = 0.11
Identities = 21/87 (24%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDS-GKARGCGIVEFTNTEAMKKALFV 98
+F+ + +E L+D F E+ G+V ++ D + G++RG G + F N + + + +
Sbjct: 165 MFIGGLNWETTDDSLRDYF-EQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK 223
Query: 99 MHRYELNGRKLVLKEETGNERRMHTSR 125
H L+G+ + K E + T++
Sbjct: 224 EH--HLDGKIIDPKRAIPREEQEKTAK 248
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 32.7 bits (71), Expect = 0.11
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 99
+FV + ELK LF + G++ YV++ GK GCG V+F N ++ + A+ +
Sbjct: 305 VFVGGLSKFVSEEELKYLF-QNFGEIVYVKI---PPGK--GCGFVQFVNRQSAEIAINQL 358
Query: 100 HRYELNGRKLVL 111
Y L ++ L
Sbjct: 359 QGYPLGNSRIRL 370
Score = 27.9 bits (59), Expect = 3.2
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTD-DSGKARGCGIVEFTNTEAMKKALFV 98
+FV ++ ++ LF + +++TD + +RG G V FT+ K AL
Sbjct: 188 IFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAE 247
Query: 99 M 99
M
Sbjct: 248 M 248
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 32.3 bits (70), Expect = 0.15
Identities = 19/70 (27%), Positives = 31/70 (44%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 99
+ + NIP+ + L +F Y D+G RG F + E K + V+
Sbjct: 234 IVIKNIPFSLKKEVLFKVFTALDIPRPYAFNYHFDNGVFRGLAFANFHSPEEAKTVVQVL 293
Query: 100 HRYELNGRKL 109
+ YE+ GR+L
Sbjct: 294 NGYEITGRRL 303
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 31.9 bits (69), Expect = 0.20
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 60 EKVGDVAYVELLTD-DSGKARGCGIVEFTNTEAMKKALFVMHRYELNGRKLVL 111
E+ G + ++ D SG+++G G V+F EA K A+ E++GR + L
Sbjct: 284 EEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNL 336
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 31.9 bits (69), Expect = 0.20
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDS---GK--ARGCGIVEFTNTEAMKK 94
++V N+ + + E + +FK G ++ V D GK + G G VEF + +
Sbjct: 621 IYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFKDKASAVA 680
Query: 95 ALFVMHRYELNGRKLVLK 112
A+ M+ + L+G KL +K
Sbjct: 681 AMHAMNGFVLDGHKLEIK 698
Score = 29.1 bits (62), Expect = 1.4
Identities = 24/100 (24%), Positives = 48/100 (48%), Gaps = 7/100 (7%)
Query: 175 VFVANLDYKADQAKIKEVFK-MAGKVRNIDLA---VDKDGN--SRGFAVIEYDHPVEAVQ 228
++V NL++ Q + ++VFK + G + + A + G S GF +E+ AV
Sbjct: 621 IYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFKDKASAVA 680
Query: 229 AISMFDKQMLYERRMTVRMD-RGVTDKGELRLPEGLKGIG 267
A+ + +L ++ +++ +GV E+R + K G
Sbjct: 681 AMHAMNGFVLDGHKLEIKLSHQGVDAAAEVRKQDSSKPKG 720
Score = 28.3 bits (60), Expect = 2.4
Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 99
+ + N+P+E +++ L G + V + ARG EF A+ +
Sbjct: 723 ILIKNLPFEATKKDVQSLLGA-YGQLRSVRVPKKFDRSARGFAFAEFVTAREAANAMRAL 781
Query: 100 HRYELNGRKLVLK 112
L GR LVL+
Sbjct: 782 KNTHLLGRHLVLQ 794
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 31.5 bits (68), Expect = 0.26
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 142 GINKPREPENLNTYGLSLQFLE-SINVQPPLVKKVFVANLDYKADQAKIKEVFKMAGKVR 200
GI K P + ++ + E S+ +PP +VFV+N+ +++ FK G+V
Sbjct: 64 GIPKSGRPFLKSLQTINYDYNENSLGPEPPT--QVFVSNISPLVTSEQLRYHFKSFGEVF 121
Query: 201 NIDLAVDK-DGNSRGFAVIEYD 221
++DL ++ G S G I +D
Sbjct: 122 DLDLKLNPYTGTSLGLCCISFD 143
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 31.5 bits (68), Expect = 0.26
Identities = 19/87 (21%), Positives = 39/87 (44%)
Query: 175 VFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEAVQAISMFD 234
V V NL ++ + F G++ ++ L + R +A +E+D P +A +A+ +
Sbjct: 8 VHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFDEPEDAKEAMENMN 67
Query: 235 KQMLYERRMTVRMDRGVTDKGELRLPE 261
+L +R + V E +P+
Sbjct: 68 YSILCDRCIRVSPANFALSAEETAVPD 94
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 31.1 bits (67), Expect = 0.35
Identities = 14/65 (21%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 173 KKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEAVQAISM 232
++++V N+D+K ++ ++ F+ G+V ++ + + +GF + +A A+S
Sbjct: 757 RELYVTNIDFKVNEKDVETFFRDYGQVESVRIP-KRFNQHKGFGYVVMTTNQDAENALSA 815
Query: 233 FDKQM 237
KQ+
Sbjct: 816 AGKQL 820
Score = 30.3 bits (65), Expect = 0.61
Identities = 36/171 (21%), Positives = 71/171 (41%), Gaps = 18/171 (10%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 99
L+V+NI ++ +++ F++ G V V + + +G G V T + + AL
Sbjct: 759 LYVTNIDFKVNEKDVETFFRD-YGQVESVRI-PKRFNQHKGFGYVVMTTNQDAENALSAA 816
Query: 100 HRYELNGRKLVLKEETGNERRMHTSRPQHREGRNNRDDKDNWGINKPREPENLNTYGLSL 159
+ +L R L + S+P+ + DN + K E N
Sbjct: 817 GK-QLGNRVL----------NVVLSKPRESLEKTRVSSNDNRTLAKSFETTESNKMSTPK 865
Query: 160 QFLESINVQPPLVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDG 210
+ E I K + V N+D ++A+++ +F+ GK+ + L + +G
Sbjct: 866 KSFEQIKS-----KSLGVTNVDGTVNEARLRSLFESYGKLYRVVLHPEHEG 911
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 30.3 bits (65), Expect = 0.61
Identities = 18/84 (21%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 173 KKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVE---AVQA 229
+ +F+ N+ + D + ++ +++GK+ + D D + F E++ + A++A
Sbjct: 139 RMLFIGNIPKELDDFWMDKILRLSGKLASWRRVADADNSMTSFGFAEFESNEQFSRALEA 198
Query: 230 ISMFDKQMLYERRMTVRMDRGVTD 253
++ F LYE + R+ +TD
Sbjct: 199 LNDFVVPPLYEGGPSTRLSL-ITD 221
>SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 298
Score = 29.9 bits (64), Expect = 0.80
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 54 LKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKAL 96
L+ F+E G ++ V + DD K +G VEF + K L
Sbjct: 172 LEKFFEENAGPISAVRMRRDDDKKFKGSVFVEFKEPDVANKFL 214
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 29.5 bits (63), Expect = 1.1
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 99
LFV N+ + L F E + +++ D GK RG G V F +++ KA
Sbjct: 32 LFVGNLGNDVNDESLYQAFSE-YPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWREK 90
Query: 100 HRYELNGRKLVLKEETGN 117
+ + R + L T +
Sbjct: 91 NGKYIGSRPVKLSRATSD 108
Score = 27.5 bits (58), Expect = 4.3
Identities = 16/80 (20%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Query: 174 KVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEAVQAISMF 233
++FV NL + + + F + + D++G +RGF + + + ++A
Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKA--WR 88
Query: 234 DKQMLYERRMTVRMDRGVTD 253
+K Y V++ R +D
Sbjct: 89 EKNGKYIGSRPVKLSRATSD 108
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 29.5 bits (63), Expect = 1.1
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 42 VSNIPYEFRWTELKDLFKEKVGDVAYV-ELLTDDSGKARGCGIVEFTNTEAMKKALFVMH 100
V N+ ++ +L D F E V + V + LT+ ++RG G VEF + + AL +
Sbjct: 98 VGNLSFDLTENDLGDFFGEGVTSIRLVIDPLTE---RSRGFGYVEFETADTLSAAL-ALS 153
Query: 101 RYELNGR 107
+L GR
Sbjct: 154 GEDLMGR 160
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 28.3 bits (60), Expect = 2.4
Identities = 16/80 (20%), Positives = 32/80 (40%)
Query: 71 LTDDSGKARGCGIVEFTNTEAMKKALFVMHRYELNGRKLVLKEETGNERRMHTSRPQHRE 130
L + + RG G V F N E +A+ M+ ++ LV+K E + + ++
Sbjct: 250 LRGEQRRGRGFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSAVFREDKQNDENEKNEN 309
Query: 131 GRNNRDDKDNWGINKPREPE 150
+ ++ EP+
Sbjct: 310 EPIEASESAPTNVSDSTEPK 329
>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
Mei2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 750
Score = 27.9 bits (59), Expect = 3.2
Identities = 18/81 (22%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 163 ESINVQPPLVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDH 222
+ I++ + +FV NL A + E+F G V+ ID + ++ G ++ +
Sbjct: 185 DDIDIFSHASRYLFVTNLPRIVPYATLLELFSKLGDVKGIDTS---SLSTDGICIVAFFD 241
Query: 223 PVEAVQAISMFDKQMLYERRM 243
+A+QA Q + R+
Sbjct: 242 IRQAIQAAKSLRSQRFFNDRL 262
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 27.9 bits (59), Expect = 3.2
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Query: 83 IVEFTNTEAMKKALFVMHRYELNGRKLVLKEE-TGNERRMHTSRPQHREGRNNRDDKDNW 141
+ + E + LF ++ ELNG K+ L+EE N R +R H E + R D
Sbjct: 1729 VQDLEEREKKDQLLFQRYQKELNGFKVQLEEEREKNLRIRQDNRHMHAEIGDIRTKFDEL 1788
Query: 142 GINKPREPENLNTYGLSLQFLESIN 166
+ K + + LQ L +N
Sbjct: 1789 VLEKTNLLKENSILQADLQSLSRVN 1813
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 27.5 bits (58), Expect = 4.3
Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTD-DSGKARGCGIVEFTNTEAMKKALFV 98
L+V +P+ F +++ F + G V + + + +G ++ +EF + +
Sbjct: 107 LYVGRLPHGFYEKQMRMYFSQ-FGPVLRLRMSRNRKTGSSKHYAFIEFESLDVANVVAET 165
Query: 99 MHRYELNGRKLVLK 112
MH Y L G+ L K
Sbjct: 166 MHNYLLYGKLLQCK 179
>SPBC26H8.09c |snf59||SWI/SNF complex subunit
Snf59|Schizosaccharomyces pombe|chr 2|||Manual
Length = 515
Score = 27.5 bits (58), Expect = 4.3
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Query: 112 KEETGNERRMHTSRPQHREGRN----NRDDKDNWGINKPREPENLNTYGLSLQFLESI 165
KEE+G R++ P+H + N N DD + + +P+ +N N +L L +
Sbjct: 16 KEESGESNRVNIEEPEHHDNSNKESTNLDDLNM--LEEPKYHDNSNKESTNLDDLNML 71
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 27.1 bits (57), Expect = 5.6
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 54 LKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVMHRYELNGRKLVLKE 113
+KD F++ G + +V++L D R V+F NT+ KAL L+GR + ++
Sbjct: 99 VKDYFQQW-GPLLHVKVLKD--WLQRPYSFVQFQNTDDASKALSEAQNTILDGRHIRIER 155
Query: 114 ETGNERRMHTSRPQHREGRNNRD 136
N R + S H+ +D
Sbjct: 156 AKVN-RTIRISSAPHQPYITKKD 177
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 26.6 bits (56), Expect = 7.5
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 53 ELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVMH 100
EL + ++KV D+A + L +++ + +VEF + K L MH
Sbjct: 305 ELINSLEKKVSDIALEKQLLEEAVERYKLAMVEFAECQRRLKELEAMH 352
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 9.9
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKAL 96
++V N+P ELK LF +VG Y L G C VEF N +AL
Sbjct: 428 IYVGNLPPSTSEEELKVLFSTQVG---YKRLCFRTKGNGPMC-FVEFENIPYAMEAL 480
>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 26.2 bits (55), Expect = 9.9
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 368 ATVLTAQANVNQAASLGIGNNEMNSNVLTSGVMGGNQMNSGPLSNISGTSRPL 420
A + +A A+++ A + GNN + NV M GN SG +N + TS P+
Sbjct: 136 APINSATASMSPANNTS-GNNITSPNVRGELDMSGNIAMSGGPTNTASTSGPV 187
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 26.2 bits (55), Expect = 9.9
Identities = 13/66 (19%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 99
L++SN+P + +++ LFK + +L D ++RG G + + + +
Sbjct: 386 LYISNLPLHWNESDISTLFKP--SKIISNRVLRDSKEQSRGVGFARMQDRKTAEDIINKF 443
Query: 100 HRYELN 105
+ + L+
Sbjct: 444 NNFVLD 449
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.135 0.389
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,681,604
Number of Sequences: 5004
Number of extensions: 66805
Number of successful extensions: 201
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 145
Number of HSP's gapped (non-prelim): 66
length of query: 470
length of database: 2,362,478
effective HSP length: 75
effective length of query: 395
effective length of database: 1,987,178
effective search space: 784935310
effective search space used: 784935310
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 55 (26.2 bits)
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