GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001542-TA|BGIBMGA001542-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif)
         (470 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha ...    27   1.1  
AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha ...    25   3.3  
AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein p...    24   7.7  

>AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha 1
           chain protein.
          Length = 1024

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 12/24 (50%), Positives = 15/24 (62%)

Query: 262 GLKGIGMGLGPNGEPLRDVARNLP 285
           GL+G+   +GP G P RD A  LP
Sbjct: 761 GLQGLRGDVGPEGRPGRDGAPGLP 784


>AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha 1
           chain precursor protein.
          Length = 801

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 1/26 (3%)

Query: 254 KGELRLPEGLKGIGMGLGPNGEPLRD 279
           KG+ R  EGL G+    GP GEP RD
Sbjct: 364 KGD-RGSEGLHGLKGQSGPKGEPGRD 388


>AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein
            protein.
          Length = 3325

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 13/45 (28%), Positives = 20/45 (44%)

Query: 400  MGGNQMNSGPLSNISGTSRPLGVSVPNQGYGRDTGVQQSTRDKPS 444
            +GG +     L  +S   R L   +  + Y RD   + S RD P+
Sbjct: 2935 IGGTKSRGAILLELSRELRELREELEARRYDRDMSTETSKRDIPN 2979


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.315    0.135    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 377,648
Number of Sequences: 2123
Number of extensions: 14633
Number of successful extensions: 23
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 4
length of query: 470
length of database: 516,269
effective HSP length: 66
effective length of query: 404
effective length of database: 376,151
effective search space: 151965004
effective search space used: 151965004
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 50 (24.2 bits)