Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001542-TA|BGIBMGA001542-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif)
(470 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 65 8e-11
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 61 1e-09
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 61 1e-09
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 61 2e-09
At1g45100.1 68414.m05170 polyadenylate-binding protein, putative... 55 9e-08
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 54 2e-07
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 52 1e-06
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 51 2e-06
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 51 2e-06
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 51 2e-06
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 50 3e-06
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 50 4e-06
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 50 4e-06
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 48 1e-05
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 48 2e-05
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 48 2e-05
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 48 2e-05
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 48 2e-05
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 47 2e-05
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 47 2e-05
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 47 3e-05
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 46 7e-05
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 46 7e-05
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 45 9e-05
At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 45 9e-05
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 45 9e-05
At5g02530.1 68418.m00187 RNA and export factor-binding protein, ... 45 9e-05
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 45 1e-04
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 44 2e-04
At3g48830.1 68416.m05333 polynucleotide adenylyltransferase fami... 44 2e-04
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 44 3e-04
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 44 3e-04
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 43 4e-04
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 43 5e-04
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 43 5e-04
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 42 7e-04
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 42 7e-04
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 42 7e-04
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 42 7e-04
At1g66260.1 68414.m07522 RNA and export factor-binding protein, ... 42 7e-04
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 42 9e-04
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 42 9e-04
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 42 9e-04
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 42 9e-04
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 42 9e-04
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 41 0.002
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 41 0.002
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 41 0.002
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 41 0.002
At5g37720.1 68418.m04541 RNA and export factor-binding protein, ... 40 0.003
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 40 0.003
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 40 0.003
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 40 0.003
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 40 0.004
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 40 0.004
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 40 0.004
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 40 0.004
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 40 0.004
At3g10845.1 68416.m01306 RNA recognition motif (RRM)-containing ... 40 0.005
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 40 0.005
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 40 0.005
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 40 0.005
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 40 0.005
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 39 0.006
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 39 0.008
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 39 0.008
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 39 0.008
At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing ... 38 0.011
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 38 0.011
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 38 0.011
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 38 0.011
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 38 0.011
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 38 0.014
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 38 0.019
At3g48840.1 68416.m05334 RNA recognition motif (RRM)-containing ... 38 0.019
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 37 0.025
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 37 0.025
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 37 0.025
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 37 0.025
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 37 0.025
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 37 0.033
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 37 0.033
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 37 0.033
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 37 0.033
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 36 0.044
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 36 0.058
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 36 0.058
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ... 36 0.076
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 36 0.076
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 35 0.10
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 35 0.13
At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ... 35 0.13
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 35 0.13
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 35 0.13
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 34 0.18
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 34 0.18
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 34 0.18
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 34 0.18
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 34 0.18
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 34 0.18
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 34 0.18
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 34 0.18
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 34 0.18
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 34 0.18
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 34 0.18
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 34 0.23
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 34 0.23
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 34 0.23
At2g47310.1 68415.m05906 flowering time control protein-related ... 34 0.23
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 34 0.23
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 33 0.31
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 33 0.31
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 33 0.31
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 33 0.31
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 33 0.31
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 33 0.31
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 33 0.31
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 33 0.31
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 33 0.41
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 33 0.41
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 33 0.41
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 33 0.41
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 33 0.41
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 33 0.41
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 33 0.41
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 33 0.54
At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing ... 33 0.54
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 33 0.54
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 33 0.54
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 33 0.54
At1g52000.1 68414.m05866 jacalin lectin family protein similar t... 33 0.54
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 33 0.54
At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protei... 32 0.71
At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protei... 32 0.71
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 32 0.71
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 32 0.71
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 32 0.71
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 32 0.71
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 32 0.71
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 32 0.71
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 32 0.71
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 32 0.71
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 32 0.94
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 32 0.94
At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) famil... 31 1.2
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 31 1.2
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 31 1.2
At5g60980.1 68418.m07649 nuclear transport factor 2 (NTF2) famil... 31 1.6
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 31 1.6
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 31 1.6
At1g13730.1 68414.m01612 nuclear transport factor 2 (NTF2) famil... 31 1.6
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 31 2.2
At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing ... 31 2.2
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 31 2.2
At3g26400.1 68416.m03292 eukaryotic translation initiation facto... 30 2.9
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 30 3.8
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 30 3.8
At5g16840.1 68418.m01973 RNA recognition motif (RRM)-containing ... 30 3.8
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 30 3.8
At1g24570.1 68414.m03091 expressed protein contains Pfam profile... 30 3.8
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 29 5.0
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 29 5.0
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 29 5.0
At3g50670.2 68416.m05543 U1 small nuclear ribonucleoprotein 70 (... 29 6.6
At3g20890.1 68416.m02641 heterogeneous nuclear ribonucleoprotein... 29 6.6
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 29 6.6
At1g79000.1 68414.m09212 p300/CBP acetyltransferase-related prot... 29 6.6
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 29 8.8
At5g24440.1 68418.m02880 RNA-binding protein, putative 29 8.8
At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesi... 29 8.8
At3g54000.3 68416.m05969 expressed protein 29 8.8
At3g54000.2 68416.m05968 expressed protein 29 8.8
At3g54000.1 68416.m05970 expressed protein 29 8.8
At3g22640.1 68416.m02858 cupin family protein contains similarit... 29 8.8
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 29 8.8
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 29 8.8
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 65.3 bits (152), Expect = 8e-11
Identities = 57/207 (27%), Positives = 100/207 (48%), Gaps = 20/207 (9%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 99
LFV+N+PYE + + D FK KVG+V V+L+ + GK GCG VEF + ++AL
Sbjct: 129 LFVANLPYETKIPNIIDFFK-KVGEVVRVQLIVNLKGKLVGCGFVEFASVNEAEEALQKK 187
Query: 100 HRYELNGRKLVLKEETGNERRMHTSRPQHREGRNNRDDKDNWGINKPREPENLNTYGLSL 159
+ L+ K+ L + N++ + P++ D W + R L
Sbjct: 188 NGECLDNNKIFL--DVANKKATYLP-PKY------CIDHKVWDKDYRR---------LES 229
Query: 160 QFLESINVQPPLVKKV-FVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVI 218
+E P V++V FVANL + + I + F G+V +I L V+ +G G+ +
Sbjct: 230 HPIEEDERPPNSVEEVLFVANLSPQTKISDIFDFFNCVGEVVSIRLMVNHEGKHVGYGFV 289
Query: 219 EYDHPVEAVQAISMFDKQMLYERRMTV 245
E+ E +A+ + + L++ ++ +
Sbjct: 290 EFASADETKKALENKNGEYLHDHKIFI 316
Score = 51.2 bits (117), Expect = 1e-06
Identities = 50/189 (26%), Positives = 90/189 (47%), Gaps = 24/189 (12%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 99
LFV+N+ + + +++ D F VG+V + L+ + GK G G VEF + + KKAL
Sbjct: 246 LFVANLSPQTKISDIFDFFN-CVGEVVSIRLMVNHEGKHVGYGFVEFASADETKKALENK 304
Query: 100 HRYELNGRKLVLKEETGNERRMHTSRPQHREGRNNRD--DKDNWGINKPREPENLNTYGL 157
+ L+ K+ + + + P + G N D +++ I++ P
Sbjct: 305 NGEYLHDHKIFID--------VAKTAP-YPPGPNYEDYLRRESLPIDEDETPP------- 348
Query: 158 SLQFLESINVQPPLVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAV 217
+F+E++ V+ K +FVA+L K + I FK G+V ++ L ++ G G A
Sbjct: 349 --EFVEAVGVRK---KTLFVAHLSRKTEITHIINFFKDVGEVVHVRLILNHTGKHVGCAF 403
Query: 218 IEYDHPVEA 226
+E+ EA
Sbjct: 404 VEFGSANEA 412
Score = 50.4 bits (115), Expect = 3e-06
Identities = 52/206 (25%), Positives = 92/206 (44%), Gaps = 9/206 (4%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEF--TNTEAMKKALF 97
LFV+++ + T + + FK+ VG+V +V L+ + +GK GC VEF N M +AL
Sbjct: 361 LFVAHLSRKTEITHIINFFKD-VGEVVHVRLILNHTGKHVGCAFVEFGSANEAKMVRALE 419
Query: 98 VMHRYELNGRKLVLKEETGNERRMHTSRPQHREGRNNRDDKDNWGINKPREPENLNTYGL 157
+ LN K+ L+ H+ + +++ I + E L+
Sbjct: 420 TKNGEYLNDCKIFLEVAKMVPYPPPKYCIHHKVWYEDYLRRESLLIEENETEEGLDD--- 476
Query: 158 SLQFLESINVQPPLVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAV 217
+ +E V+ K +FVANL + + I + FK +V + L V+ G G
Sbjct: 477 TPALVEEFAVRK---KTLFVANLSPRTKISHIIKFFKDVAEVVRVRLIVNHRGEHVGCGF 533
Query: 218 IEYDHPVEAVQAISMFDKQMLYERRM 243
+E+ EA +A+ + + L R +
Sbjct: 534 VEFASVNEAQKALQKMNGENLRSREI 559
Score = 43.2 bits (97), Expect = 4e-04
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 99
LFV+N+ + + + FK+ V +V V L+ + G+ GCG VEF + +KAL M
Sbjct: 491 LFVANLSPRTKISHIIKFFKD-VAEVVRVRLIVNHRGEHVGCGFVEFASVNEAQKALQKM 549
Query: 100 HRYELNGRKLVL 111
+ L R++ L
Sbjct: 550 NGENLRSREIFL 561
Score = 36.7 bits (81), Expect = 0.033
Identities = 20/58 (34%), Positives = 30/58 (51%)
Query: 173 KKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEAVQAI 230
K +FVANL Y+ I + FK G+V + L V+ G G +E+ EA +A+
Sbjct: 127 KTLFVANLPYETKIPNIIDFFKKVGEVVRVQLIVNLKGKLVGCGFVEFASVNEAEEAL 184
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 61.3 bits (142), Expect = 1e-09
Identities = 53/208 (25%), Positives = 95/208 (45%), Gaps = 32/208 (15%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 99
++V N+P E ELK F K GD++ ++ D SG +R G V F + EA A+
Sbjct: 227 VYVKNLPKEITDDELKKTFG-KYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAV--- 282
Query: 100 HRYELNGRKLVLKEETGNERRMHTSRPQHREGRNNRDDKDNWGINKPREPENLNTYGLSL 159
++NG L E ++ R Q + R + + E E ++ +
Sbjct: 283 --EKMNGISL-------GEDVLYVGRAQKKSDREEE-------LRRKFEQERISRF---- 322
Query: 160 QFLESINVQPPLVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIE 219
+ L+ N+ ++ NLD + K+KE+F G V + + ++ G SRGF +
Sbjct: 323 EKLQGSNL--------YLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVA 374
Query: 220 YDHPVEAVQAISMFDKQMLYERRMTVRM 247
Y +P EA+ A+ + +M+ + + V +
Sbjct: 375 YSNPEEALLAMKEMNGKMIGRKPLYVAL 402
Score = 42.7 bits (96), Expect = 5e-04
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 175 VFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEAVQAISMFD 234
VF+ NLD D + E F G + + +A+D G S+G+ ++++ A AI +
Sbjct: 134 VFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLN 193
Query: 235 KQMLYERRMTV-----RMDRGVTDKG 255
+L ++++ V R DR ++ G
Sbjct: 194 GMLLNDKQVFVGHFVRRQDRARSESG 219
Score = 36.3 bits (80), Expect = 0.044
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
Query: 170 PLVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEAVQA 229
P V+V NL + ++K+ F G + + + D+ GNSR F + + P A A
Sbjct: 222 PSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVA 281
Query: 230 ISMFD-----KQMLYERRMTVRMDR 249
+ + + +LY R + DR
Sbjct: 282 VEKMNGISLGEDVLYVGRAQKKSDR 306
Score = 33.9 bits (74), Expect = 0.23
Identities = 14/73 (19%), Positives = 38/73 (52%)
Query: 175 VFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEAVQAISMFD 234
++V +LD +++ + ++F V N+ + D S G+A + + +P +A +A+ +
Sbjct: 47 LYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMESLN 106
Query: 235 KQMLYERRMTVRM 247
+ +R + + +
Sbjct: 107 YAPIRDRPIRIML 119
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 61.3 bits (142), Expect = 1e-09
Identities = 54/215 (25%), Positives = 98/215 (45%), Gaps = 32/215 (14%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 99
++V N+P E EL+ F K G ++ ++ D SG +R G V F TEA A+
Sbjct: 231 VYVKNLPKEIGEDELRKTFG-KFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAV--- 286
Query: 100 HRYELNGRKLVLKEETGNERRMHTSRPQHREGRNNRDDKDNWGINKPREPENLNTYGLSL 159
++NG L + ++ R Q + R + + E E +N + S
Sbjct: 287 --EKMNGISL-------GDDVLYVGRAQKKSEREEE-------LRRKFEQERINRFEKS- 329
Query: 160 QFLESINVQPPLVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIE 219
+ N+ ++ NLD D K+KE+F G V + + ++ G SRGF +
Sbjct: 330 ---QGANL--------YLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVA 378
Query: 220 YDHPVEAVQAISMFDKQMLYERRMTVRMDRGVTDK 254
Y +P EA++A+S + +M+ + + + + + D+
Sbjct: 379 YSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDR 413
Score = 41.1 bits (92), Expect = 0.002
Identities = 17/71 (23%), Positives = 37/71 (52%)
Query: 175 VFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEAVQAISMFD 234
+F+ NLD D + E F G + + +A+D G S+G+ ++++ A AI +
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLN 197
Query: 235 KQMLYERRMTV 245
++ ++++ V
Sbjct: 198 GMLMNDKQVFV 208
Score = 39.1 bits (87), Expect = 0.006
Identities = 17/73 (23%), Positives = 41/73 (56%)
Query: 175 VFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEAVQAISMFD 234
++ +LD K +A + ++FK V ++ + D++ S G+A I + +P +A +A+ +
Sbjct: 51 LYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEALN 110
Query: 235 KQMLYERRMTVRM 247
L++R + + +
Sbjct: 111 YTPLFDRPIRIML 123
Score = 35.9 bits (79), Expect = 0.058
Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 99
L++ N+ +LK++F E G+V +++ + G +RG G V ++N E +AL M
Sbjct: 334 LYLKNLDDSVDDEKLKEMFSE-YGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEM 392
Query: 100 HRYELNGRK--LVLKEETGNERRMH 122
+ ++ GRK + + +RR H
Sbjct: 393 NG-KMIGRKPLYIALAQRKEDRRAH 416
Score = 33.5 bits (73), Expect = 0.31
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
Query: 166 NVQPPLVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYD---- 221
N P V+V NL + + ++++ F G + + + D+ GNSR F + ++
Sbjct: 222 NTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEA 281
Query: 222 --HPVEAVQAISMFDKQMLYERRMTVRMDR 249
VE + IS+ D +LY R + +R
Sbjct: 282 AASAVEKMNGISLGD-DVLYVGRAQKKSER 310
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 60.9 bits (141), Expect = 2e-09
Identities = 58/208 (27%), Positives = 92/208 (44%), Gaps = 25/208 (12%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDD-SGKARGCGIVEFTNTEAMKKALFV 98
LFV N+P+ +L LF E G+V VE++ D +G++RG G V ++ ++ A
Sbjct: 93 LFVGNLPFNVDSAQLAQLF-ESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Query: 99 MHRYELNGRKLVLKEETGNERRMHTSRPQHREGRNNRDDKDNWGINKPREPENLNTYGLS 158
+ YEL+GR L+ G P RE +R + ++G + + YG
Sbjct: 152 FNGYELDGRP--LRVNAGPP-------PPKREDGFSRGPRSSFGSSG-------SGYG-- 193
Query: 159 LQFLESINVQPPLVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKD-GNSRGFAV 217
+V+V NL + D ++ +F GKV + D+D G S+GF
Sbjct: 194 ----GGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGF 249
Query: 218 IEYDHPVEAVQAISMFDKQMLYERRMTV 245
+ YD E AI D L R++ V
Sbjct: 250 VTYDSSQEVQNAIKSLDGADLDGRQIRV 277
Score = 37.5 bits (83), Expect = 0.019
Identities = 23/85 (27%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTD-DSGKARGCGIVEFTNTEAMKKALFV 98
++V N+ + L+ LF E+ G V ++ D DSG+++G G V + +++ ++ A+
Sbjct: 206 VYVGNLSWGVDDMALESLFSEQ-GKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264
Query: 99 MHRYELNGRKLVLKE-ETGNERRMH 122
+ +L+GR++ + E E RR +
Sbjct: 265 LDGADLDGRQIRVSEAEARPPRRQY 289
>At1g45100.1 68414.m05170 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Nicotiana tabacum] GI:7673355, [Cucumis
sativus] GI:7528270; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 497
Score = 55.2 bits (127), Expect = 9e-08
Identities = 52/193 (26%), Positives = 88/193 (45%), Gaps = 10/193 (5%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 99
LFV+N+ + +++ + FK+ VG+V +V L+ + GK G G VEF + +KAL
Sbjct: 249 LFVANLRDSIQISDIINFFKD-VGEVVHVRLIVNSQGKHAGWGFVEFASANEAEKALVKN 307
Query: 100 HRYELNGRKLVLKEETGNERRMHTSRPQHREGRNNRDDKDNWGINKPREPENLNTYGLSL 159
Y L+ K+ L R H+ + +++ I +E E + +
Sbjct: 308 GEY-LHNYKISLDGAKTAPHRPPKFCLDHKVWYEDYLRRESLLI---KEVEGVEGLDETP 363
Query: 160 QFLESINVQPPLVKKVFVANLDY--KADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAV 217
FLE + + VFVANL Y + I F G++ +I + VD G G
Sbjct: 364 DFLEEVAARK---NTVFVANLPYNCRLIVPTIINFFSDVGEIVHIRIIVDHMGEPVGCGF 420
Query: 218 IEYDHPVEAVQAI 230
+E++ EA +A+
Sbjct: 421 VEFNSSNEAEKAL 433
Score = 34.7 bits (76), Expect = 0.13
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 171 LVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEAVQAI 230
+ K +FVANL + I FK G+V ++ L V+ G G+ +E+ EA +A+
Sbjct: 245 ITKTLFVANLRDSIQISDIINFFKDVGEVVHVRLIVNSQGKHAGWGFVEFASANEAEKAL 304
Score = 31.9 bits (69), Expect = 0.94
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 99
+ VSN+ + +K F V V V L+ + GK G G VEF + KAL
Sbjct: 160 VIVSNLSPLTKIAHIKGFFNG-VAQVVSVRLVVNHEGKHVGYGFVEFASAYGANKALEEK 218
Query: 100 HRYELNGRKLVL 111
+ L+ K++L
Sbjct: 219 NGEYLHNHKILL 230
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 54.0 bits (124), Expect = 2e-07
Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 173 KKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNS-RGFAVIEYDHPVEAVQAIS 231
K +FV+ L+Y++ ++KIK F+ G ++ + L D+ N +G+A IEY H + A
Sbjct: 138 KTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYK 197
Query: 232 MFDKQMLYERRMTVRMDRGVT 252
D Q + RR+ V ++RG T
Sbjct: 198 QADGQKIDGRRVLVDVERGRT 218
Score = 43.2 bits (97), Expect = 4e-04
Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDD-SGKARGCGIVEFTNTEAMKKALFV 98
LFVS + YE +++K F E G + V L+TD + K +G +E+ +T MK A
Sbjct: 140 LFVSRLNYESSESKIKREF-ESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQ 198
Query: 99 MHRYELNGRKLVLKEETGNERRMHTSRPQHREG 131
+++GR++++ E G R + RP+ G
Sbjct: 199 ADGQKIDGRRVLVDVERG--RTVPNWRPRRLGG 229
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 51.6 bits (118), Expect = 1e-06
Identities = 33/99 (33%), Positives = 51/99 (51%), Gaps = 5/99 (5%)
Query: 174 KVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKD-GNSRGFAVIEYDHPVEAVQAISM 232
K+FV + Y D+ ++E F G+V + + VD++ G SRGFA + + EA A+ +
Sbjct: 35 KIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQL 94
Query: 233 FDKQMLYERRMTVRMDRGVTDKGELRLPEGLKGIGMGLG 271
D Q L+ RR+ V T++G G G G G G
Sbjct: 95 -DGQDLHGRRIRVNY---ATERGSGFGGRGFGGPGGGYG 129
Score = 37.5 bits (83), Expect = 0.019
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTD-DSGKARGCGIVEFTNTEAMKKALFV 98
+FV I Y L++ F K G+V +++ D ++G++RG V FT+TE A+
Sbjct: 36 IFVGGISYSTDEFGLREAFS-KYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM-Q 93
Query: 99 MHRYELNGRKL 109
+ +L+GR++
Sbjct: 94 LDGQDLHGRRI 104
>At5g65260.1 68418.m08209 polyadenylate-binding protein family
protein / PABP family protein low similarity to
poly(A)-binding protein II [Drosophila melanogaster]
GI:6007612; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain
Length = 220
Score = 50.8 bits (116), Expect = 2e-06
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 173 KKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEAVQAISM 232
+ VFV N+DY ++++ F+ G V + + DK G +GFA +E+ VEAVQ
Sbjct: 92 RSVFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDKFGQPKGFAYVEFVE-VEAVQEALQ 150
Query: 233 FDKQMLYERRMTVRMDR 249
++ L+ R++ V R
Sbjct: 151 LNESELHGRQLKVLQKR 167
Score = 45.2 bits (102), Expect = 9e-05
Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 99
+FV N+ Y E++ F + G V V +LTD G+ +G VEF EA+++AL +
Sbjct: 94 VFVGNVDYACTPEEVQQHF-QTCGTVHRVTILTDKFGQPKGFAYVEFVEVEAVQEAL-QL 151
Query: 100 HRYELNGRKL-VLKEET 115
+ EL+GR+L VL++ T
Sbjct: 152 NESELHGRQLKVLQKRT 168
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 50.8 bits (116), Expect = 2e-06
Identities = 51/215 (23%), Positives = 90/215 (41%), Gaps = 32/215 (14%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 99
++V N+ +LK+ F E G + ++ D GK++G G V F N + +A+
Sbjct: 31 VYVKNLAESTTDDDLKNAFGE-YGKITSAVVMKDGEGKSKGFGFVNFENADDAARAV--- 86
Query: 100 HRYELNGRKLVLKEETGNERRMHTSRPQHREGRNNRDDKDNWGINKPREPENLNTYGLSL 159
LNG K +++ + R Q + R + R +NL
Sbjct: 87 --ESLNGHKF-------DDKEWYVGRAQKKSERETE--------LRVRYEQNLKEAADKF 129
Query: 160 QFLESINVQPPLVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIE 219
Q S N+ +V NLD K+KE+F G V + + D +G S+G +
Sbjct: 130 Q---SSNL--------YVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVA 178
Query: 220 YDHPVEAVQAISMFDKQMLYERRMTVRMDRGVTDK 254
+ P EA +A+S +M+ + + V + + D+
Sbjct: 179 FATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDR 213
Score = 34.7 bits (76), Expect = 0.13
Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 175 VFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEAVQAISMFD 234
V+V NL +K F GK+ + + D +G S+GF + +++ +A +A+ +
Sbjct: 31 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLN 90
Query: 235 KQMLYERRMTV-RMDRGVTDKGELRL 259
++ V R + + ELR+
Sbjct: 91 GHKFDDKEWYVGRAQKKSERETELRV 116
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 50.8 bits (116), Expect = 2e-06
Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTD-DSGKARGCGIVEFTNTEAMKKALFV 98
+FV NIPY+ +L+++ E VG V L+TD ++GK +G G E+ + E A
Sbjct: 11 VFVGNIPYDATEEQLREICGE-VGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRN 69
Query: 99 MHRYELNGRKLVLKEETGNERRMHTSRPQHREG 131
+ YE+NGR+L + + N++ +R Q + G
Sbjct: 70 LQSYEINGRQLRV-DFAENDKGTDKTRDQSQGG 101
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 50.4 bits (115), Expect = 3e-06
Identities = 28/79 (35%), Positives = 40/79 (50%)
Query: 171 LVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEAVQAI 230
L +K+FV NL + I E+F G V N+++ KDG +RGFA + EA AI
Sbjct: 93 LKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKDGKNRGFAFVTMASGEEAQAAI 152
Query: 231 SMFDKQMLYERRMTVRMDR 249
FD + R ++V R
Sbjct: 153 DKFDTFQVSGRIISVSFAR 171
Score = 41.9 bits (94), Expect = 9e-04
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 40 LFVSNIPYEFRWTELKDLF-KEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFV 98
L+VSN+ ++ R T L++LF V+ + D G++ G G V F E + A+
Sbjct: 196 LYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPEGRSSGYGFVSFATREEAENAITK 255
Query: 99 MHRYELNGRKLVLK 112
++ E+ GR + LK
Sbjct: 256 LNGKEIMGRPITLK 269
Score = 38.3 bits (85), Expect = 0.011
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 99
LFV N+P+ ++ +LF + G V VE++ GK RG V + E + A+
Sbjct: 97 LFVFNLPWSMSVNDISELFGQ-CGTVNNVEIIRQKDGKNRGFAFVTMASGEEAQAAIDKF 155
Query: 100 HRYELNGR 107
++++GR
Sbjct: 156 DTFQVSGR 163
Score = 33.9 bits (74), Expect = 0.23
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 174 KVFVANLDYKADQAKIKEVFKMA--GKVRNIDLAVDKDGNSRGFAVIEYDHPVEAVQAIS 231
K++V+NL +KA ++E+F A V + D +G S G+ + + EA AI+
Sbjct: 195 KLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPEGRSSGYGFVSFATREEAENAIT 254
Query: 232 MFDKQMLYERRMTVR 246
+ + + R +T++
Sbjct: 255 KLNGKEIMGRPITLK 269
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 49.6 bits (113), Expect = 4e-06
Identities = 27/79 (34%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 173 KKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEAVQAISM 232
K +F NL Y+ ++ I+ FK AG+V ++ L+ DG+ +G+ IE+ P EA +A+ M
Sbjct: 384 KTLFAGNLSYQIARSDIENFFKEAGEVVDVRLSSFDDGSFKGYGHIEFASPEEAQKALEM 443
Query: 233 FDKQML-YERRMTVRMDRG 250
K +L + R+ + +RG
Sbjct: 444 NGKLLLGRDVRLDLANERG 462
Score = 46.8 bits (106), Expect = 3e-05
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 99
LF N+ Y+ +++++ FKE G+V V L + D G +G G +EF + E +KAL M
Sbjct: 386 LFAGNLSYQIARSDIENFFKE-AGEVVDVRLSSFDDGSFKGYGHIEFASPEEAQKAL-EM 443
Query: 100 HRYELNGR--KLVLKEETGNERRMHTSR 125
+ L GR +L L E G R + R
Sbjct: 444 NGKLLLGRDVRLDLANERGTPRNSNPGR 471
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 49.6 bits (113), Expect = 4e-06
Identities = 27/86 (31%), Positives = 51/86 (59%), Gaps = 4/86 (4%)
Query: 173 KKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDK-DGNSRGFAVIEYDHPVEAVQAIS 231
K +F ANL + ++A ++ FK AG+V ++ + ++ DG+ RGF +E+ EA +A+
Sbjct: 297 KTLFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKALE 356
Query: 232 MFDKQML-YERRMTVRMDRGVTDKGE 256
+ +L E R+ + +RG ++GE
Sbjct: 357 FHGRPLLGREIRLDIAQERG--ERGE 380
Score = 46.8 bits (106), Expect = 3e-05
Identities = 34/103 (33%), Positives = 50/103 (48%), Gaps = 5/103 (4%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTD-DSGKARGCGIVEFTNTEAMKKALFV 98
LF +N+ + ++++ FKE G+V V T+ D G RG G VEF ++E +KAL
Sbjct: 299 LFAANLSFNIERADVENFFKE-AGEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKAL-E 356
Query: 99 MHRYELNGR--KLVLKEETGNERRMHTSRPQHREGRNNRDDKD 139
H L GR +L + +E G PQ R+ D D
Sbjct: 357 FHGRPLLGREIRLDIAQERGERGERPAFTPQSGNFRSGGDGGD 399
Score = 39.5 bits (88), Expect = 0.005
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 173 KKVFVANLDYKADQAKIK----EVFKMAGKVRNIDLAVDKD-GNSRGFAVIEYDHPVE 225
KK+FV D + IK E F G+++N+ + +D+D GNS+G A +E+ E
Sbjct: 401 KKIFVKGFDASLSEDDIKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEFSEGKE 458
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 48.4 bits (110), Expect = 1e-05
Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 173 KKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEAVQAISM 232
+ ++V N+DY ++++ F+ G V + + DK G +GFA +E+ VEAVQ +
Sbjct: 103 RSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVE-VEAVQNSLI 161
Query: 233 FDKQMLYERRMTVRMDR 249
++ L+ R++ V R
Sbjct: 162 LNESELHGRQIKVSAKR 178
Score = 45.6 bits (103), Expect = 7e-05
Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 99
++V N+ Y E++ F + G V V +LTD G+ +G VEF EA++ +L ++
Sbjct: 105 IYVGNVDYACTPEEVQQHF-QSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSL-IL 162
Query: 100 HRYELNGRKLVLKEETGNERRMHTSRPQHREGRNNR 135
+ EL+GR++ + + N M R + R R R
Sbjct: 163 NESELHGRQIKVSAKRTNVPGMRQFRGRGRPFRPMR 198
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 47.6 bits (108), Expect = 2e-05
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 173 KKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEAVQAISM 232
+ V+V N+DY +++ F+ G V + + +DK G +GFA +E+ VEAVQ
Sbjct: 89 RSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVE-VEAVQEALQ 147
Query: 233 FDKQMLYERRMTVRMDR 249
++ L+ R++ V R
Sbjct: 148 LNESELHGRQLKVSPKR 164
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 47.6 bits (108), Expect = 2e-05
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 173 KKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEAVQAISM 232
+ V+V N+DY +++ F+ G V + + +DK G +GFA +E+ VEAVQ
Sbjct: 89 RSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVE-VEAVQEALQ 147
Query: 233 FDKQMLYERRMTVRMDR 249
++ L+ R++ V R
Sbjct: 148 LNESELHGRQLKVSPKR 164
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 47.6 bits (108), Expect = 2e-05
Identities = 24/97 (24%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Query: 160 QFLESINVQPPLVK--KVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAV 217
QF E Q + K ++V N++ + ++++ F G + + L D+ G S+GF
Sbjct: 289 QFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGF 348
Query: 218 IEYDHPVEAVQAISMFDKQMLYERRMTVRMDRGVTDK 254
+ + P EA+ A+ F QM + + + V + + D+
Sbjct: 349 VCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKKEDR 385
Score = 41.9 bits (94), Expect = 9e-04
Identities = 22/83 (26%), Positives = 42/83 (50%)
Query: 172 VKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEAVQAIS 231
V VFV NL A ++++FK G + + +A +DG SRG+ ++++ A AI
Sbjct: 111 VGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQ 170
Query: 232 MFDKQMLYERRMTVRMDRGVTDK 254
+ ++ ++ + V TD+
Sbjct: 171 TLNSTIVADKEIYVGKFMKKTDR 193
Score = 40.3 bits (90), Expect = 0.003
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKAL 96
+FV N+P L+D+FK K G++ ++ T + GK+RG G V+F +A A+
Sbjct: 114 VFVKNLPESVTNAVLQDMFK-KFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAI 169
Score = 38.3 bits (85), Expect = 0.011
Identities = 21/80 (26%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 175 VFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEAVQAI---- 230
+++ NLD + ++E F GK+ ++ +A D++ RG+A + +D+P +A +A
Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVN 262
Query: 231 -SMFDKQMLYERRMTVRMDR 249
+ F + LY R + +R
Sbjct: 263 GTKFGSKCLYVGRAQKKAER 282
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 47.6 bits (108), Expect = 2e-05
Identities = 22/74 (29%), Positives = 38/74 (51%)
Query: 172 VKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEAVQAIS 231
V +F+ NLD D + E F G + + +AVD G S+G+ ++YD A AI
Sbjct: 132 VGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAID 191
Query: 232 MFDKQMLYERRMTV 245
+ +L ++++ V
Sbjct: 192 KLNGMLLNDKQVYV 205
Score = 43.6 bits (98), Expect = 3e-04
Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 4/121 (3%)
Query: 136 DDKDNWGINKPREPENLNTYGLSLQFLESIN--VQPPLVKKVFVANLDYKADQAKIKEVF 193
DDK+ W + K ++ T L +F +S+ ++V NLD K++E F
Sbjct: 290 DDKE-WFVGKAQKKSERETE-LKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLREHF 347
Query: 194 KMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEAVQAISMFDKQMLYERRMTVRMDRGVTD 253
G + + + D G SRG + + P EA +AI+ + +M+ + + V + + D
Sbjct: 348 APFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALAQRKED 407
Query: 254 K 254
+
Sbjct: 408 R 408
Score = 32.3 bits (70), Expect = 0.71
Identities = 14/56 (25%), Positives = 29/56 (51%)
Query: 175 VFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEAVQAI 230
V+V NL ++ +VF G + + D +G S+GF + +++ +A +A+
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAV 281
Score = 30.3 bits (65), Expect = 2.9
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 175 VFVANLDYKADQAKIKEVFKMAGKVRNIDLAVD-KDGNSRGFAVIEYDHPVEAVQAISMF 233
++V +LD +++ E F AG+V ++ + D S G+ + Y P +A +A++
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106
Query: 234 DKQMLYERRMTV 245
+ L R + V
Sbjct: 107 NFMALNGRAIRV 118
Score = 30.3 bits (65), Expect = 2.9
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 99
++V N+ EL +F E G ++ D GK++G G V F N++ +A+ +
Sbjct: 226 VYVKNLSESLSDEELNKVFGE-FGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDAL 284
Query: 100 HRYELNGRK-LVLKEETGNER 119
+ + ++ V K + +ER
Sbjct: 285 NGKTFDDKEWFVGKAQKKSER 305
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 47.2 bits (107), Expect = 2e-05
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 168 QPPLVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKD-GNSRGFAVIEYDHPVEA 226
+PP K+FV NL Y D + +F+ AG V ++ ++D SRGF + EA
Sbjct: 108 EPPEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEA 167
Query: 227 VQAISMFDKQMLYERRMTV 245
+A+ F+ + RR+TV
Sbjct: 168 EKAVEKFNSFEVNGRRLTV 186
Score = 46.8 bits (106), Expect = 3e-05
Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 7/91 (7%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTD-DSGKARGCGIVEFTNTEAMKKALFV 98
LFV N+PY+ L LF E+ G V E++ + D+ ++RG G V + E +KA+
Sbjct: 115 LFVGNLPYDVDSQALAMLF-EQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEK 173
Query: 99 MHRYELNGRKLVLKEETGNERRMHTSRPQHR 129
+ +E+NGR+L T N SRP+ +
Sbjct: 174 FNSFEVNGRRL-----TVNRAAPRGSRPERQ 199
Score = 39.1 bits (87), Expect = 0.006
Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTD-DSGKARGCGIVEFTNTEAMKKALFV 98
++V N+P++ L+ LF E G V +++D ++G++RG G V+ +N + A+
Sbjct: 209 IYVGNLPWDVDSGRLERLFSEH-GKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAA 267
Query: 99 MHRYELNGRKLVLKEETGNERR 120
+ L GR + + RR
Sbjct: 268 LDGQNLEGRAIKVNVAEERTRR 289
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 47.2 bits (107), Expect = 2e-05
Identities = 48/208 (23%), Positives = 92/208 (44%), Gaps = 31/208 (14%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 99
++V N+ +LK LF E G++ ++ D GK+R G V F EA A+
Sbjct: 121 VYVKNLVETATDADLKRLFGE-FGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAI--- 176
Query: 100 HRYELNGRKLVLKEETGNERRMHTSRPQHREGRNNRDDKDNWGINKPREPENLNTYGLSL 159
++NG +V+ +E+ +H R Q + R D K + + K
Sbjct: 177 --EKMNG--VVV-----DEKELHVGRAQRKTNRTE-DLKAKFELEK-------------- 212
Query: 160 QFLESINVQPPLVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIE 219
+ + + + ++V NLD D K++E+F G + + + V +G S+G +E
Sbjct: 213 -IIRDMKTRKGM--NLYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVE 269
Query: 220 YDHPVEAVQAISMFDKQMLYERRMTVRM 247
+ EA +A+ + +M+ + + V +
Sbjct: 270 FSTSEEASKAMLKMNGKMVGNKPIYVSL 297
Score = 38.7 bits (86), Expect = 0.008
Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 175 VFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEAVQAISMFD 234
VFV NLD D ++ ++F GKV + +A D G S+G+ +++ + A + +
Sbjct: 33 VFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFYSDLSVYTACNFHN 92
Query: 235 KQMLYERRMTV--RMDRGVTDKGEL 257
++ + + V + RG DK +
Sbjct: 93 GTLIRNQHIHVCPFVSRGQWDKSRV 117
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 46.8 bits (106), Expect = 3e-05
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 160 QFLESINVQPPLVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDK-DGNSRGFAVI 218
QF S + P K+F+ L + D+ +K+ F G+V + +A DK G SRGF +
Sbjct: 30 QFCTSSSASPS--SKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFV 87
Query: 219 EYDHPVEAVQAISMFDKQMLYERRMTV 245
++ +A+ A D + L R + +
Sbjct: 88 DFAEEGDALSAKDAMDGKGLLGRPLRI 114
Score = 33.1 bits (72), Expect = 0.41
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDD-SGKARGCGIVEFTNTEAMKKALFV 98
LF+ + + LKD F G+VA V + D SG++RG G V+F A
Sbjct: 43 LFIGGLSWSVDEQSLKDAFSS-FGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDA 101
Query: 99 MHRYELNGRKL 109
M L GR L
Sbjct: 102 MDGKGLLGRPL 112
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 45.6 bits (103), Expect = 7e-05
Identities = 34/126 (26%), Positives = 56/126 (44%), Gaps = 6/126 (4%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 99
++V N+P + R E++DLF K G V ++L + G VEF + A++
Sbjct: 9 IYVGNLPGDIREREVEDLF-SKYGPVVQIDLKIPP--RPPGYAFVEFEDARDADDAIYGR 65
Query: 100 HRYELNGRKLVLKEETGNERRMHTSRPQHR-EGRNNRDDKDNWGINKPREPENLNTYGLS 158
Y+ +G L ++ G R H +R + GR R D G + R P + Y +
Sbjct: 66 DGYDFDGHHLRVELAHGGRRSSHDARGSYSGRGRGGRGGGDGGG--RERGPSRRSEYRVV 123
Query: 159 LQFLES 164
+ L S
Sbjct: 124 VSGLPS 129
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 45.6 bits (103), Expect = 7e-05
Identities = 34/126 (26%), Positives = 56/126 (44%), Gaps = 6/126 (4%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 99
++V N+P + R E++DLF K G V ++L + G VEF + A++
Sbjct: 9 IYVGNLPGDIREREVEDLF-SKYGPVVQIDLKIPP--RPPGYAFVEFEDARDADDAIYGR 65
Query: 100 HRYELNGRKLVLKEETGNERRMHTSRPQHR-EGRNNRDDKDNWGINKPREPENLNTYGLS 158
Y+ +G L ++ G R H +R + GR R D G + R P + Y +
Sbjct: 66 DGYDFDGHHLRVELAHGGRRSSHDARGSYSGRGRGGRGGGDGGG--RERGPSRRSEYRVV 123
Query: 159 LQFLES 164
+ L S
Sbjct: 124 VSGLPS 129
>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
putative
Length = 242
Score = 45.2 bits (102), Expect = 9e-05
Identities = 20/74 (27%), Positives = 40/74 (54%)
Query: 174 KVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEAVQAISMF 233
K++++NLDY IKE+F G+++ + D+ G S+G A + Y +A+ A+ +
Sbjct: 87 KLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVKKY 146
Query: 234 DKQMLYERRMTVRM 247
+ L + M + +
Sbjct: 147 NDVQLDGKPMKIEI 160
Score = 31.9 bits (69), Expect = 0.94
Identities = 18/73 (24%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 99
L++SN+ Y ++K+LF E VG++ + D SG+++G V ++ A+
Sbjct: 88 LYISNLDYGVMNEDIKELFAE-VGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVKKY 146
Query: 100 HRYELNGRKLVLK 112
+ +L+G+ + ++
Sbjct: 147 NDVQLDGKPMKIE 159
>At5g59950.2 68418.m07519 RNA and export factor-binding protein,
putative
Length = 178
Score = 45.2 bits (102), Expect = 9e-05
Identities = 20/74 (27%), Positives = 40/74 (54%)
Query: 174 KVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEAVQAISMF 233
K++++NLDY IKE+F G+++ + D+ G S+G A + Y +A+ A+ +
Sbjct: 23 KLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVKKY 82
Query: 234 DKQMLYERRMTVRM 247
+ L + M + +
Sbjct: 83 NDVQLDGKPMKIEI 96
Score = 31.9 bits (69), Expect = 0.94
Identities = 18/73 (24%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 99
L++SN+ Y ++K+LF E VG++ + D SG+++G V ++ A+
Sbjct: 24 LYISNLDYGVMNEDIKELFAE-VGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVKKY 82
Query: 100 HRYELNGRKLVLK 112
+ +L+G+ + ++
Sbjct: 83 NDVQLDGKPMKIE 95
>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
putative
Length = 244
Score = 45.2 bits (102), Expect = 9e-05
Identities = 20/74 (27%), Positives = 40/74 (54%)
Query: 174 KVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEAVQAISMF 233
K++++NLDY IKE+F G+++ + D+ G S+G A + Y +A+ A+ +
Sbjct: 89 KLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVKKY 148
Query: 234 DKQMLYERRMTVRM 247
+ L + M + +
Sbjct: 149 NDVQLDGKPMKIEI 162
Score = 31.9 bits (69), Expect = 0.94
Identities = 18/73 (24%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 99
L++SN+ Y ++K+LF E VG++ + D SG+++G V ++ A+
Sbjct: 90 LYISNLDYGVMNEDIKELFAE-VGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVKKY 148
Query: 100 HRYELNGRKLVLK 112
+ +L+G+ + ++
Sbjct: 149 NDVQLDGKPMKIE 161
>At5g02530.1 68418.m00187 RNA and export factor-binding protein,
putative BcDNA.LD24793, Drosophila melanogaster,
EMBL:AF172637
Length = 292
Score = 45.2 bits (102), Expect = 9e-05
Identities = 19/74 (25%), Positives = 39/74 (52%)
Query: 174 KVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEAVQAISMF 233
K++++NLDY IKE+F G ++ + D+ G S+G A + + +A+ A+ +
Sbjct: 109 KLYISNLDYGVSNEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRY 168
Query: 234 DKQMLYERRMTVRM 247
+ L + M + +
Sbjct: 169 NNVQLDGKLMKIEI 182
Score = 35.1 bits (77), Expect = 0.10
Identities = 20/73 (27%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 99
L++SN+ Y ++K+LF E VGD+ + D SG+++G V F+ A+
Sbjct: 110 LYISNLDYGVSNEDIKELFSE-VGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRY 168
Query: 100 HRYELNGRKLVLK 112
+ +L+G+ + ++
Sbjct: 169 NNVQLDGKLMKIE 181
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 44.8 bits (101), Expect = 1e-04
Identities = 22/74 (29%), Positives = 38/74 (51%)
Query: 172 VKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEAVQAIS 231
V +FV NLD D + E F G + + +A D G SRG+ +++D A AI
Sbjct: 133 VGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIE 192
Query: 232 MFDKQMLYERRMTV 245
+ ++L ++++ V
Sbjct: 193 KLNGKVLNDKQIFV 206
Score = 36.7 bits (81), Expect = 0.033
Identities = 47/199 (23%), Positives = 79/199 (39%), Gaps = 32/199 (16%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 99
++V N+ ELK F + G ++ ++ D GK+R G V F N E +A+
Sbjct: 227 VYVKNLSEATTDDELKTTFGQ-YGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEA- 284
Query: 100 HRYELNGRKLVLKEETGNERRMHTSRPQHREGRNNRDDKDNWGINKPREPENLNTYGLSL 159
LNG+K KE + + + R R + D G NK + LN Y
Sbjct: 285 ----LNGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSD--GGNKF---DGLNLY---- 331
Query: 160 QFLESINVQPPLVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIE 219
V NLD K++E+F G + + + D G S+G +
Sbjct: 332 -----------------VKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVA 374
Query: 220 YDHPVEAVQAISMFDKQML 238
+ EA + ++ + +M+
Sbjct: 375 FSAASEASRVLNEMNGKMV 393
Score = 33.9 bits (74), Expect = 0.23
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 99
LFV N+ L + F G + ++ TD G++RG G V+F ++ K A+ +
Sbjct: 136 LFVKNLDKSVDNKTLHEAFSG-CGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKL 194
Query: 100 HRYELNGRKLVLKEETGNERR 120
+ LN +++ + E R
Sbjct: 195 NGKVLNDKQIFVGPFLRKEER 215
Score = 31.1 bits (67), Expect = 1.6
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDS-GKARGCGIVEFTNTEAMKKALFV 98
L+V ++ + ++L D F E V V V + D + + G G V ++NT+ +KA+
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTE-VCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQK 106
Query: 99 MHRYELNGRKL 109
++ LNG+ +
Sbjct: 107 LNYSYLNGKMI 117
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 44.4 bits (100), Expect = 2e-04
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTD-DSGKARGCGIVEFTNTEAMKKALFV 98
LF+ + Y L++ F K G+V ++ D ++G++RG G V FT++EA A+
Sbjct: 42 LFIGGMAYSMDEDSLREAFT-KYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQA 100
Query: 99 MHRYELNGRKLVLKEETGNER 119
+ +L+GR V+K N+R
Sbjct: 101 LDGRDLHGR--VVKVNYANDR 119
Score = 43.2 bits (97), Expect = 4e-04
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 2/102 (1%)
Query: 174 KVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKD-GNSRGFAVIEYDHPVEAVQAISM 232
K+F+ + Y D+ ++E F G+V + + +D++ G SRGF + + A AI
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQA 100
Query: 233 FDKQMLYERRMTVRMDRGVTDKGELRLPEGLKGIGMGLGPNG 274
D + L+ R + V T G G G G G G +G
Sbjct: 101 LDGRDLHGRVVKVNYANDRTSGGGFG-GGGYGGGGGGYGGSG 141
>At3g48830.1 68416.m05333 polynucleotide adenylyltransferase family
protein / RNA recognition motif (RRM)-containing protein
similar to SP|P13685 Poly(A) polymerase (EC 2.7.7.19)
{Escherichia coli O157:H7}; contains Pfam profiles
PF01743: polyA polymerase family protein, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 881
Score = 44.4 bits (100), Expect = 2e-04
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 99
L+V +P + + ++ D FK+ VG V V+L T +G G VEF + KKAL +
Sbjct: 566 LYVCCLPRDTKMPDIIDFFKD-VGQVVSVQLTTKRNGLRLSTGFVEFASANEAKKALDMK 624
Query: 100 HRYELNGRKLVL 111
+ L G KL+L
Sbjct: 625 NGEYLCGNKLIL 636
Score = 42.3 bits (95), Expect = 7e-04
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFV 98
L ++++P + + + D FK+ G V V L+ D GK G G VEFT+ + KK V
Sbjct: 813 LIIAHVPRRTKISHIIDFFKD-AGQVVNVRLIVDQKGKPFGRGFVEFTSADEAKKVRLV 870
Score = 32.7 bits (71), Expect = 0.54
Identities = 42/185 (22%), Positives = 77/185 (41%), Gaps = 8/185 (4%)
Query: 56 DLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVMHRYELNGRKLVLK-EE 114
D F + VG+V V L+ K G G VEF + AL + L+ K+ L +
Sbjct: 700 DFFND-VGEVVSVRLIVSPESKHVGYGFVEFASPCLANMALEKKNGEYLHDHKIFLGVAK 758
Query: 115 TGNERRMHTSRPQHREGRNNRDDKDNWGINKPREPENLNTYGLSLQFLESINVQPPLVKK 174
T + + +D+ I + E L+ + +E++ ++ K
Sbjct: 759 TAPYPPRIKYNLAEKLWYEDYLLRDSLLIEEDETVEGLDE---TPSCVEAVALRE---KV 812
Query: 175 VFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEAVQAISMFD 234
+ +A++ + + I + FK AG+V N+ L VD+ G G +E+ EA + ++
Sbjct: 813 LIIAHVPRRTKISHIIDFFKDAGQVVNVRLIVDQKGKPFGRGFVEFTSADEAKKVRLVYS 872
Query: 235 KQMLY 239
Y
Sbjct: 873 NDEKY 877
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 43.6 bits (98), Expect = 3e-04
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 174 KVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKD-GNSRGFAVIEYDHPVEAVQAISM 232
+V+V NL + D +++++F GKV + D++ G SRGF + E +AIS
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304
Query: 233 FDKQMLYERRMTVRM 247
D Q L R + V +
Sbjct: 305 LDGQNLEGRAIRVNV 319
Score = 42.7 bits (96), Expect = 5e-04
Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTD-DSGKARGCGIVEFTNTEAMKKALFV 98
LFV N+ Y+ L LF E+ G V E++ + ++ ++RG G V ++ + + A+
Sbjct: 152 LFVGNLAYDVNSQALAMLF-EQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 210
Query: 99 MHRYELNGRKLVLKE 113
+RY+LNGR L + +
Sbjct: 211 FNRYDLNGRLLTVNK 225
Score = 39.1 bits (87), Expect = 0.006
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 168 QPPLVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGN-SRGFAVIEYDHPVEA 226
+P K+FV NL Y + + +F+ AG V ++ +++ + SRGF + EA
Sbjct: 145 EPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEA 204
Query: 227 VQAISMFDKQMLYERRMTV 245
A+ F++ L R +TV
Sbjct: 205 ETAVEKFNRYDLNGRLLTV 223
Score = 37.1 bits (82), Expect = 0.025
Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTD-DSGKARGCGIVEFTNTEAMKKALFV 98
++V N+P++ L+ LF E G V ++ D ++G++RG G V ++ + + +A+
Sbjct: 246 VYVGNLPWDVDNGRLEQLFSEH-GKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304
Query: 99 MHRYELNGRKL 109
+ L GR +
Sbjct: 305 LDGQNLEGRAI 315
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 43.6 bits (98), Expect = 3e-04
Identities = 28/103 (27%), Positives = 52/103 (50%), Gaps = 4/103 (3%)
Query: 146 PREPE-NLNTYGLSLQFLESINVQPPLVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDL 204
P +P NLN + L + ++ P ++FV L Y + +I+E+ + G +R +L
Sbjct: 349 PSQPNPNLNLGAVGLSSGSTGGLEGP--DRIFVGGLPYYFTEVQIRELLESFGPLRGFNL 406
Query: 205 AVDKD-GNSRGFAVIEYDHPVEAVQAISMFDKQMLYERRMTVR 246
D++ GNS+G+A Y P A + + + ++ +TVR
Sbjct: 407 VKDRETGNSKGYAFCVYQDPSVTDIACAALNGIKMGDKTLTVR 449
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 43.2 bits (97), Expect = 4e-04
Identities = 26/85 (30%), Positives = 44/85 (51%)
Query: 169 PPLVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEAVQ 228
P +++ANLD + + + +F GKV LA D G SRGFA IE++ A +
Sbjct: 13 PRKFTSLYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFRGESRGFAFIEFESADSAGR 72
Query: 229 AISMFDKQMLYERRMTVRMDRGVTD 253
A+ D +++ ++ + V+ V D
Sbjct: 73 AMLHMDGRLIGQKILCVQRTPKVED 97
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 42.7 bits (96), Expect = 5e-04
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 174 KVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKD-GNSRGFAVIEYDHPVEAVQAISM 232
K+F+ L + D A +++ F G V + + VD++ G SRGF + ++ A AIS
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 233 FDKQMLYERRMTV 245
D + L R + V
Sbjct: 96 MDGKELNGRHIRV 108
Score = 39.1 bits (87), Expect = 0.006
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTD-DSGKARGCGIVEFTNTEAMKKALFV 98
LF+ + + L+D F GDV +++ D ++G++RG G V F + A A+
Sbjct: 37 LFIGGLSWGTDDASLRDAFAH-FGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 99 MHRYELNGRKL 109
M ELNGR +
Sbjct: 96 MDGKELNGRHI 106
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 42.7 bits (96), Expect = 5e-04
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 174 KVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKD-GNSRGFAVIEYDHPVEAVQAISM 232
K+F+ L + D A +++ F G V + + VD++ G SRGF + ++ A AIS
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 233 FDKQMLYERRMTV 245
D + L R + V
Sbjct: 96 MDGKELNGRHIRV 108
Score = 39.1 bits (87), Expect = 0.006
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTD-DSGKARGCGIVEFTNTEAMKKALFV 98
LF+ + + L+D F GDV +++ D ++G++RG G V F + A A+
Sbjct: 37 LFIGGLSWGTDDASLRDAFAH-FGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 99 MHRYELNGRKL 109
M ELNGR +
Sbjct: 96 MDGKELNGRHI 106
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 42.3 bits (95), Expect = 7e-04
Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 3/112 (2%)
Query: 137 DKDNWGINKPREPENLNTYGLSLQFLESINVQPPLVK--KVFVANLDYKADQAKIKEVFK 194
D + G+ K + + + G ES V ++ ++FV NL Y A + ++ E F
Sbjct: 223 DVEAGGVGKDDDGDAMEVEGDGKVAQESKAVSDDVLDTGRLFVRNLPYTATEEELMEHFS 282
Query: 195 MAGKVRNIDLAVDKD-GNSRGFAVIEYDHPVEAVQAISMFDKQMLYERRMTV 245
GK+ + L +DK+ SRG A I Y P A +A+ D R + +
Sbjct: 283 TFGKISEVHLVLDKETKRSRGIAYILYLIPECAARAMEELDNSSFQGRLLHI 334
Score = 35.5 bits (78), Expect = 0.076
Identities = 36/104 (34%), Positives = 47/104 (45%), Gaps = 10/104 (9%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEF-TNTEAM--KKAL 96
L V NI +E EL+ LF G + + L + G+ G VEF T EA+ KKAL
Sbjct: 671 LHVKNIAFEATKRELRQLFSP-FGQIKSMRLPKKNIGQYAGYAFVEFVTKQEALNAKKAL 729
Query: 97 FVMHRYELNGRKLVLKEETGNERRMHTSRPQHREGRNNRDDKDN 140
H Y GR LVL E ++ M R R ++ DN
Sbjct: 730 ASTHFY---GRHLVL-EWANDDNSMEAIR--KRSAAKFDEENDN 767
Score = 34.7 bits (76), Expect = 0.13
Identities = 16/72 (22%), Positives = 37/72 (51%)
Query: 174 KVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEAVQAISMF 233
K+ V N+ ++A + +++++F G+++++ L G G+A +E+ EA+ A
Sbjct: 670 KLHVKNIAFEATKRELRQLFSPFGQIKSMRLPKKNIGQYAGYAFVEFVTKQEALNAKKAL 729
Query: 234 DKQMLYERRMTV 245
Y R + +
Sbjct: 730 ASTHFYGRHLVL 741
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 42.3 bits (95), Expect = 7e-04
Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTD-DSGKARGCGIVEFTNTEAMKKALFV 98
+F+ +P + +L+DL +E +G++ V L+ D DSG ++G V F + +KA+
Sbjct: 118 VFIGGLPRDVGEEDLRDLCEE-IGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEE 176
Query: 99 MHRYELNGRKL 109
+H E G+ +
Sbjct: 177 LHSKEFKGKTI 187
Score = 39.1 bits (87), Expect = 0.006
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 99
L+V NIP +LK+LF ++ G+V + GK R G V + + KA+
Sbjct: 294 LYVKNIPENTSTEQLKELF-QRHGEVTKIVTPPGKGGK-RDFGFVHYAERSSALKAVKDT 351
Query: 100 HRYELNGRKLVLKEETGNERRMH 122
RYE+NG+ L + R H
Sbjct: 352 ERYEVNGQPLEVVLAKPQAERKH 374
Score = 31.5 bits (68), Expect = 1.2
Identities = 16/63 (25%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 169 PPLVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKD-GNSRGFAVIEYDHPVEAV 227
PP +VF+ L + ++++ + G++ + L D+D G+S+G+A + + A
Sbjct: 112 PPHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQ 171
Query: 228 QAI 230
+AI
Sbjct: 172 KAI 174
Score = 31.5 bits (68), Expect = 1.2
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 172 VKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEAVQAI 230
VK ++V N+ ++KE+F+ G+V I K G R F + Y A++A+
Sbjct: 291 VKALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGK-GGKRDFGFVHYAERSSALKAV 348
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 42.3 bits (95), Expect = 7e-04
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 99
++ N+ + LKD F ++ G + + ++G++RG G + F + E ++ AL M
Sbjct: 221 VYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATM 280
Query: 100 HRYELNGRKLVLKEETGNERRMHTSRPQHREG 131
+ E+ GR L L + E+ S P EG
Sbjct: 281 NGVEVEGRALRLNLASEREKPT-VSPPSVEEG 311
Score = 41.1 bits (92), Expect = 0.002
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 174 KVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDK-DGNSRGFAVIEYDHPVEAVQAISM 232
+++V NL Y +++ ++F AG V ++ + DK SRGF + EA +A+ M
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQM 176
Query: 233 FDKQMLYERRMTV 245
F+ + R + V
Sbjct: 177 FNSSQIGGRTVKV 189
Score = 40.3 bits (90), Expect = 0.003
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDD-SGKARGCGIVEFTNTEAMKKALFV 98
L+V N+PY +EL +F E G V V+++ D + ++RG G V + E K+A+ +
Sbjct: 118 LYVGNLPYTITSSELSQIFGE-AGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQM 176
Query: 99 MHRYELNGR 107
+ ++ GR
Sbjct: 177 FNSSQIGGR 185
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 42.3 bits (95), Expect = 7e-04
Identities = 29/84 (34%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 175 VFVANLDYKADQAKIKEVFKMAGKVR-NIDLAVDKD-GNSRGFAVIEYDHPVEAVQAISM 232
+F+ NLD D+ + + F G + N + D D GNSRGF I YD + AI
Sbjct: 114 LFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIES 173
Query: 233 FDKQMLYERRMTVRMDRGVTDKGE 256
Q L R++TV KGE
Sbjct: 174 MTGQYLSNRQITVSYAYKKDTKGE 197
Score = 33.1 bits (72), Expect = 0.41
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 175 VFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGN-SRGFAVIEYDHPVEAVQAISMF 233
V+V LD + + + E+F AG V N+ + D+ N + + IEY +A AI +
Sbjct: 27 VYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVL 86
Query: 234 DKQMLYERRMTVRMDRGVTDKGEL 257
+ L+ + +R+++ DK L
Sbjct: 87 NMIKLHGK--PIRVNKASQDKKSL 108
Score = 28.7 bits (61), Expect = 8.8
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTD-DSGKARGCGIVEFTNTEAMKKALFV 98
LF+ N+ + L D F + +++ D D+G +RG G + + + EA A+
Sbjct: 114 LFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIES 173
Query: 99 MHRYELNGRKLVL----KEETGNER 119
M L+ R++ + K++T ER
Sbjct: 174 MTGQYLSNRQITVSYAYKKDTKGER 198
>At1g66260.1 68414.m07522 RNA and export factor-binding protein,
putative similar to GI:7159943 from [Mus musculus] (RNA
6 (4), 638-650 (2000))
Length = 295
Score = 42.3 bits (95), Expect = 7e-04
Identities = 22/92 (23%), Positives = 45/92 (48%)
Query: 175 VFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEAVQAISMFD 234
V++ NLD I+E++ G+++ + DK+G G A + Y +A+QA+ ++
Sbjct: 109 VYITNLDQGVTNEDIRELYAEIGELKRYAIHYDKNGRPSGSAEVVYMRRSDAIQAMRKYN 168
Query: 235 KQMLYERRMTVRMDRGVTDKGELRLPEGLKGI 266
+L R M + + G T+ + + G+
Sbjct: 169 NVLLDGRPMKLEILGGNTESAPVAARVNVTGL 200
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 41.9 bits (94), Expect = 9e-04
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 41 FVSNIPYEFRWTELKDLFKEKVGDVAYVELLTD-DSGKARGCGIVEFTNTEAMKKALFVM 99
FV + + +L+ F + GDV +++ D +SG++RG G V F + +AM+ A+ M
Sbjct: 9 FVGGLAWATNDEDLQRTFSQ-FGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEM 67
Query: 100 HRYELNGRKLVLKE 113
+ EL+GR + + E
Sbjct: 68 NGKELDGRVITVNE 81
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 41.9 bits (94), Expect = 9e-04
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 41 FVSNIPYEFRWTELKDLFKEKVGDVAYVELLTD-DSGKARGCGIVEFTNTEAMKKALFVM 99
FV + + +L+ F + GDV +++ D +SG++RG G V F + +AM+ A+ M
Sbjct: 9 FVGGLAWATNDEDLQRTFSQ-FGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEM 67
Query: 100 HRYELNGRKLVLKE 113
+ EL+GR + + E
Sbjct: 68 NGKELDGRVITVNE 81
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 41.9 bits (94), Expect = 9e-04
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 41 FVSNIPYEFRWTELKDLFKEKVGDVAYVELLTD-DSGKARGCGIVEFTNTEAMKKALFVM 99
FV + + +L+ F + GDV +++ D +SG++RG G V F + +AM+ A+ M
Sbjct: 9 FVGGLAWATNDEDLQRTFSQ-FGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEM 67
Query: 100 HRYELNGRKLVLKE 113
+ EL+GR + + E
Sbjct: 68 NGKELDGRVITVNE 81
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 41.9 bits (94), Expect = 9e-04
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 6/102 (5%)
Query: 174 KVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKD-GNSRGFAVIEYDHPVEAVQAISM 232
K+FV L + D + +K+ F G+V + D++ G SRGF + + A AI
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 233 FDKQMLYERRMTVRMDRGVTDKGELRLPEGLKGIGMGLGPNG 274
D + L R++ V + T++ P G G G G G
Sbjct: 96 MDGKELNGRQIRVNL---ATERSS--APRSSFGGGGGYGGGG 132
Score = 37.1 bits (82), Expect = 0.025
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTD-DSGKARGCGIVEFTNTEAMKKALFV 98
LFV + + + LK F G+V ++ D ++G++RG G V F+ ++ A+
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTS-FGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 99 MHRYELNGRKL 109
M ELNGR++
Sbjct: 96 MDGKELNGRQI 106
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 41.9 bits (94), Expect = 9e-04
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 6/102 (5%)
Query: 174 KVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKD-GNSRGFAVIEYDHPVEAVQAISM 232
K+FV L + D + +K+ F G+V + D++ G SRGF + + A AI
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 233 FDKQMLYERRMTVRMDRGVTDKGELRLPEGLKGIGMGLGPNG 274
D + L R++ V + T++ P G G G G G
Sbjct: 96 MDGKELNGRQIRVNL---ATERSS--APRSSFGGGGGYGGGG 132
Score = 37.1 bits (82), Expect = 0.025
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTD-DSGKARGCGIVEFTNTEAMKKALFV 98
LFV + + + LK F G+V ++ D ++G++RG G V F+ ++ A+
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTS-FGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 99 MHRYELNGRKL 109
M ELNGR++
Sbjct: 96 MDGKELNGRQI 106
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 41.1 bits (92), Expect = 0.002
Identities = 22/75 (29%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTD-DSGKARGCGIVEFTNTEAMKKALFV 98
L+V N+ + L++LF E+ G V ++ D DSG+++G G V ++++ ++KA+
Sbjct: 251 LYVGNLSWGVDDMALENLFNEQ-GKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 309
Query: 99 MHRYELNGRKLVLKE 113
++ +L+GR++ + E
Sbjct: 310 LNGADLDGRQIRVSE 324
Score = 40.7 bits (91), Expect = 0.002
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDD-SGKARGCGIVEFTNTEAMKKALFV 98
LFV N+ + +L LF E G+V VE++ D +G++RG G V + ++ A
Sbjct: 101 LFVGNLSFNVDSAQLAQLF-ESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 99 MHRYELNGRKL 109
+ YE GR L
Sbjct: 160 FNGYEFEGRPL 170
Score = 35.5 bits (78), Expect = 0.076
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 174 KVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKD-GNSRGFAVIEYDHPVEAVQAISM 232
+++V NL + D ++ +F GKV + D+D G S+GF + E +AI+
Sbjct: 250 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 309
Query: 233 FDKQMLYERRMTV 245
+ L R++ V
Sbjct: 310 LNGADLDGRQIRV 322
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 41.1 bits (92), Expect = 0.002
Identities = 22/75 (29%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTD-DSGKARGCGIVEFTNTEAMKKALFV 98
L+V N+ + L++LF E+ G V ++ D DSG+++G G V ++++ ++KA+
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQ-GKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 99 MHRYELNGRKLVLKE 113
++ +L+GR++ + E
Sbjct: 318 LNGADLDGRQIRVSE 332
Score = 40.7 bits (91), Expect = 0.002
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDD-SGKARGCGIVEFTNTEAMKKALFV 98
LFV N+ + +L LF E G+V VE++ D +G++RG G V + ++ A
Sbjct: 101 LFVGNLSFNVDSAQLAQLF-ESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 99 MHRYELNGRKL 109
+ YE GR L
Sbjct: 160 FNGYEFEGRPL 170
Score = 35.5 bits (78), Expect = 0.076
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 174 KVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKD-GNSRGFAVIEYDHPVEAVQAISM 232
+++V NL + D ++ +F GKV + D+D G S+GF + E +AI+
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 233 FDKQMLYERRMTV 245
+ L R++ V
Sbjct: 318 LNGADLDGRQIRV 330
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 41.1 bits (92), Expect = 0.002
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDD-SGKARGCGIVEFTNTEAMKKALFV 98
L V N+ ++ R +L+ F E+ G V + L D +G RG G ++F + +A
Sbjct: 39 LLVRNLRHDCRQEDLRRPF-EQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQ 97
Query: 99 MHRYELNGRKLVLKEETGNERRMHTSRPQHREGRNNR 135
M Y L GR+L + N ++ R + R GR+NR
Sbjct: 98 MDGYLLLGRELTVVFAEENRKKPTEMRTRDRGGRSNR 134
Score = 40.7 bits (91), Expect = 0.002
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 171 LVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDK-DGNSRGFAVIEYDHPVEAVQA 229
L + V NL + Q ++ F+ G V++I L D G+ RGF I++ P +A +A
Sbjct: 35 LPTSLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEA 94
Query: 230 ISMFDKQMLYERRMTV 245
D +L R +TV
Sbjct: 95 KHQMDGYLLLGRELTV 110
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 40.7 bits (91), Expect = 0.002
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 170 PLVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDK-DGNSRGFAVIEYDHPVEAVQ 228
P ++V+NLD+ + I +F GKV + + D+ SRG A + Y +A +
Sbjct: 54 PSKSTLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAK 113
Query: 229 AISMFDKQMLYERRMTV 245
A D ++L R++TV
Sbjct: 114 AARSMDAKILNGRKLTV 130
Score = 37.9 bits (84), Expect = 0.014
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTD-DSGKARGCGIVEFTNTEAMKKALFV 98
L+VSN+ + +++ LF G VA V +L D + ++RG V + + E KA
Sbjct: 59 LYVSNLDFSLTNSDIHTLFST-FGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARS 117
Query: 99 MHRYELNGRKLVLKEETGNER 119
M LNGRKL + N R
Sbjct: 118 MDAKILNGRKLTVSIAADNGR 138
>At5g37720.1 68418.m04541 RNA and export factor-binding protein,
putative transcriptional coactivator ALY, Mus musculus,
EMBL:MMU89876
Length = 288
Score = 40.3 bits (90), Expect = 0.003
Identities = 21/74 (28%), Positives = 36/74 (48%)
Query: 174 KVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEAVQAISMF 233
++ V NLD I+E+F G+V + DK+G G A + Y +A QA+ +
Sbjct: 94 RLHVTNLDQGVTNEDIRELFSEIGEVERYAIHYDKNGRPSGTAEVVYPRRSDAFQALKKY 153
Query: 234 DKQMLYERRMTVRM 247
+ +L R M + +
Sbjct: 154 NNVLLDGRPMRLEI 167
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 40.3 bits (90), Expect = 0.003
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTD-DSGKARGCGIVEFTNTEAMKKALFV 98
LFV N+ + L F+E GDV ++ D D+G++RG G V +++ M+ AL
Sbjct: 179 LFVGNLSWTVTSESLAGAFRE-CGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALES 237
Query: 99 MHRYELNGRKL 109
+ +EL GR +
Sbjct: 238 LDGFELEGRAI 248
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 40.3 bits (90), Expect = 0.003
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGC-GIVEFTNTEAMKKALFV 98
LF+ NIP EF EL F + G V ++ D + C G + + + A + A+
Sbjct: 341 LFIYNIPREFEDQELAATF-QPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINT 399
Query: 99 MHRYELNGRKL--VLKEETGNERRMHTSR 125
M+ +L+G+KL LK + G +++ S+
Sbjct: 400 MNGCQLSGKKLKVQLKRDNGQQQQQQQSK 428
Score = 39.9 bits (89), Expect = 0.004
Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 4/112 (3%)
Query: 142 GINKPREPENLNTYGLS---LQFLESINVQPPLVKKVFVANLDYKADQAKIKEVFKMAGK 198
G+ PR P + G+S S+ + P +F+ N+ + + ++ F+ GK
Sbjct: 305 GMIPPRLPLTTVSPGISNNGTSIPSSLQTEGPAGANLFIYNIPREFEDQELAATFQPFGK 364
Query: 199 VRNIDLAVDK-DGNSRGFAVIEYDHPVEAVQAISMFDKQMLYERRMTVRMDR 249
V + + VDK G S+ F I YD A AI+ + L +++ V++ R
Sbjct: 365 VLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTMNGCQLSGKKLKVQLKR 416
Score = 29.1 bits (62), Expect = 6.6
Identities = 13/67 (19%), Positives = 33/67 (49%)
Query: 174 KVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEAVQAISMF 233
K+FV L + +++ +F G ++++ + S+G ++Y+ +AV A+
Sbjct: 110 KLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEAL 169
Query: 234 DKQMLYE 240
+ + + E
Sbjct: 170 NGRHIME 176
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 40.3 bits (90), Expect = 0.003
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGC-GIVEFTNTEAMKKALFV 98
LF+ NIP EF EL F + G V ++ D + C G + + + A + A+
Sbjct: 332 LFIYNIPREFEDQELAATF-QPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINT 390
Query: 99 MHRYELNGRKL--VLKEETGNERRMHTSR 125
M+ +L+G+KL LK + G +++ S+
Sbjct: 391 MNGCQLSGKKLKVQLKRDNGQQQQQQQSK 419
Score = 39.9 bits (89), Expect = 0.004
Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 4/112 (3%)
Query: 142 GINKPREPENLNTYGLS---LQFLESINVQPPLVKKVFVANLDYKADQAKIKEVFKMAGK 198
G+ PR P + G+S S+ + P +F+ N+ + + ++ F+ GK
Sbjct: 296 GMIPPRLPLTTVSPGISNNGTSIPSSLQTEGPAGANLFIYNIPREFEDQELAATFQPFGK 355
Query: 199 VRNIDLAVDK-DGNSRGFAVIEYDHPVEAVQAISMFDKQMLYERRMTVRMDR 249
V + + VDK G S+ F I YD A AI+ + L +++ V++ R
Sbjct: 356 VLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTMNGCQLSGKKLKVQLKR 407
Score = 29.5 bits (63), Expect = 5.0
Identities = 14/70 (20%), Positives = 34/70 (48%)
Query: 171 LVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEAVQAI 230
L K+FV L + +++ +F G ++++ + S+G ++Y+ +AV A+
Sbjct: 98 LEHKLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAM 157
Query: 231 SMFDKQMLYE 240
+ + + E
Sbjct: 158 EALNGRHIME 167
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 39.9 bits (89), Expect = 0.004
Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 175 VFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDK-DGNSRGFAVIEYDHPVEAVQAISMF 233
+ V N+ ++ + +F GKV ++ + D+ G+SRGFA + Y + EA +A+
Sbjct: 18 LLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERL 77
Query: 234 DKQMLYERRMTVR 246
D +++ R +TV+
Sbjct: 78 DGRVVDGREITVQ 90
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 39.9 bits (89), Expect = 0.004
Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 175 VFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDK-DGNSRGFAVIEYDHPVEAVQAISMF 233
+ V N+ ++ + +F GKV ++ + D+ G+SRGFA + Y + EA +A+
Sbjct: 18 LLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERL 77
Query: 234 DKQMLYERRMTVR 246
D +++ R +TV+
Sbjct: 78 DGRVVDGREITVQ 90
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 39.9 bits (89), Expect = 0.004
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
Query: 41 FVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDD-SGKARGCGIVEFTNTEAMKKALFVM 99
F+ + + L+D F EK G + +++ D SG++RG G + F +AM +A+ M
Sbjct: 10 FIGGLAWTTSDRGLRDAF-EKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAM 68
Query: 100 HRYELNGRKLVLKEETGNERRMHTSRPQHREGRNNRDDKD 139
+ +L+GR + + + ++ R GR+ D+D
Sbjct: 69 NGMDLDGRTITVDKAQPHQGGAGRDNDGDR-GRDRGYDRD 107
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 39.9 bits (89), Expect = 0.004
Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 4/106 (3%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTD-DSGKARGCGIVEFTNTEAMKKALFV 98
+FV IP ELKD F K G+V +++ D ++ ++RG G V F + E + + L
Sbjct: 111 IFVGGIPSTVTEDELKDFFA-KYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSK 169
Query: 99 MHRYELNGRKLVLK--EETGNERRMHTSRPQHREGRNNRDDKDNWG 142
+ ++ ++ +K E + R S H GR++ D ++G
Sbjct: 170 GNMIDMADTQVEIKKAEPKKSLNRSPPSYGSHPRGRSSNDSYASYG 215
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 39.9 bits (89), Expect = 0.004
Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 3/114 (2%)
Query: 158 SLQFLESINVQPPLVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVD-KDGNSRGFA 216
S+ + V+PP +FV L+ + + +F G V + D+ D K G+S +A
Sbjct: 229 SIGDIPEAEVKPP-DNVLFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYA 287
Query: 217 VIEYDHPVEAVQAISMFDKQMLYERRMTVRMDRGVTDK-GELRLPEGLKGIGMG 269
IE+++ QA D ++ +RR+ V + V+ + R + KG G G
Sbjct: 288 FIEFENKESCEQAYFKMDNALIDDRRIHVDFSQSVSKLWSQFRQKDSQKGKGNG 341
>At3g10845.1 68416.m01306 RNA recognition motif (RRM)-containing
protein similar to SP|P42731 Polyadenylate-binding
protein 2 (Poly(A) binding protein 2) (PABP 2)
{Arabidopsis thaliana}; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 423
Score = 39.5 bits (88), Expect = 0.005
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Query: 40 LFVSNIPYEFRWTELKDLFK--EKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALF 97
LFV+N+ + T++ D+F + VG+V V L+ + K GC VEF + KK L
Sbjct: 129 LFVANLSPQ---TKILDIFGFCQDVGEVVSVRLIANHEDKPVGCAFVEFLSANEAKKVLE 185
Query: 98 VMHRYELNGRKLVLKEETG 116
+ +G K++L G
Sbjct: 186 NKNGEYFHGHKIILMRGHG 204
Score = 39.5 bits (88), Expect = 0.005
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 99
LFV+N+P + F++ +V V L+ D SGK GCG EF + +KAL
Sbjct: 299 LFVTNLPPRTSIQRMLYFFQDF--EVVRVRLIVDQSGKHMGCGYFEFASANEAEKALEQR 356
Query: 100 HRYELNGRKLVLK 112
+ L K+ L+
Sbjct: 357 NGKSLRYHKIFLE 369
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 39.5 bits (88), Expect = 0.005
Identities = 19/52 (36%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 63 GDVAYVELLTD-DSGKARGCGIVEFTNTEAMKKALFVMHRYELNGRKLVLKE 113
GDV +++ D ++G++RG G V F + +AMK A+ M+ +L+GR + + E
Sbjct: 32 GDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNE 83
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 39.5 bits (88), Expect = 0.005
Identities = 19/52 (36%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 63 GDVAYVELLTD-DSGKARGCGIVEFTNTEAMKKALFVMHRYELNGRKLVLKE 113
GDV +++ D ++G++RG G V F + +AMK A+ M+ +L+GR + + E
Sbjct: 32 GDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNE 83
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 39.5 bits (88), Expect = 0.005
Identities = 20/63 (31%), Positives = 38/63 (60%), Gaps = 4/63 (6%)
Query: 174 KVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEAVQAISMF 233
+V+V NLD + + ++++ FK G +RN+ +A G+A +E+D +A+ AIS
Sbjct: 3 RVYVGNLDPRVTERELEDEFKAFGVLRNVWVA----RRPPGYAFLEFDDERDALDAISAL 58
Query: 234 DKQ 236
D++
Sbjct: 59 DRK 61
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 39.5 bits (88), Expect = 0.005
Identities = 20/63 (31%), Positives = 38/63 (60%), Gaps = 4/63 (6%)
Query: 174 KVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEAVQAISMF 233
+V+V NLD + + ++++ FK G +RN+ +A G+A +E+D +A+ AIS
Sbjct: 3 RVYVGNLDPRVTERELEDEFKAFGVLRNVWVA----RRPPGYAFLEFDDERDALDAISAL 58
Query: 234 DKQ 236
D++
Sbjct: 59 DRK 61
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 39.1 bits (87), Expect = 0.006
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 171 LVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDK-DGNSRGFAVIEYDHPVEAVQA 229
L + V NL + Q +++ F+ G V++I L D G+ RGF +++ P +A A
Sbjct: 34 LPTSLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADA 93
Query: 230 ISMFDKQMLYERRMTV 245
D +L R +TV
Sbjct: 94 KHHMDGYLLLGRELTV 109
Score = 37.1 bits (82), Expect = 0.025
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDD-SGKARGCGIVEFTNTEAMKKALFV 98
L V N+ ++ R +L+ F E+ G V + L D +G RG G V+F + A
Sbjct: 38 LLVRNLRHDCRQEDLRKSF-EQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHH 96
Query: 99 MHRYELNGRKLVLKEETGNERRMHTSRPQHREGRNNRD 136
M Y L GR+L + N ++ R + R G RD
Sbjct: 97 MDGYLLLGRELTVVFAEENRKKPTEMRARERGGGRFRD 134
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 38.7 bits (86), Expect = 0.008
Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 11/111 (9%)
Query: 172 VKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEAVQAIS 231
++ VFV N +Y+ Q+ ++ +F G+V +D+ G+A + ++ +A AI
Sbjct: 1 MRPVFVGNFEYETRQSDLERLFDKYGRVDRVDM-------KSGYAFVYFEDERDAEDAIR 53
Query: 232 MFDK-QMLYE-RRMTVRMDRGV--TDKGELRLPEGLKGIGMGLGPNGEPLR 278
D YE RR++V +G +G+ + P LK N +P+R
Sbjct: 54 KLDNFPFGYEKRRLSVEWAKGERGRPRGDAKAPSNLKPTKTLFVINFDPIR 104
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 38.7 bits (86), Expect = 0.008
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTD-DSGKARGCGIVEFTNTEAMKKALFV 98
+FV + +E L++ F E+ GD+ ++TD SG+++G G V F + EA +KA V
Sbjct: 9 VFVGGLAWETHKVSLRNYF-EQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKAC-V 66
Query: 99 MHRYELNGRKLVLKEETGNERRMHTSRPQH 128
++GR+ +R S P H
Sbjct: 67 DPAPVIDGRRANCNLAAFGVQRSKPSSPIH 96
Score = 30.3 bits (65), Expect = 2.9
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 174 KVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDK-DGNSRGFAVIEYDHPVEAVQA 229
KVFV L ++ + ++ F+ G + + DK G S+G+ + + P A +A
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKA 64
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 38.7 bits (86), Expect = 0.008
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTD-DSGKARGCGIVEFTNTEAMKKALFV 98
+FV + +E L++ F E+ GD+ ++TD SG+++G G V F + EA +KA V
Sbjct: 9 VFVGGLAWETHKVSLRNYF-EQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKAC-V 66
Query: 99 MHRYELNGRKLVLKEETGNERRMHTSRPQH 128
++GR+ +R S P H
Sbjct: 67 DPAPVIDGRRANCNLAAFGVQRSKPSSPIH 96
Score = 30.3 bits (65), Expect = 2.9
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 174 KVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDK-DGNSRGFAVIEYDHPVEAVQA 229
KVFV L ++ + ++ F+ G + + DK G S+G+ + + P A +A
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKA 64
>At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 451
Score = 38.3 bits (85), Expect = 0.011
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 175 VFVANLDYK-ADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEAVQAISMF 233
+ V NL K + ++++VF G++ ++ L DG SR FA I + EA AI+
Sbjct: 4 IIVKNLPSKHVTEERLRDVFSRKGEIADVKLKRKSDGKSRQFAYIGFRTEQEAQDAITYV 63
Query: 234 DKQMLYERRMTVRM 247
+K + R++V +
Sbjct: 64 NKCFIDTYRISVEV 77
Score = 29.5 bits (63), Expect = 5.0
Identities = 21/100 (21%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Query: 40 LFVSNIPYEFRWTE-LKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFV 98
+ V N+P + E L+D+F K G++A V+L GK+R + F + + A+
Sbjct: 4 IIVKNLPSKHVTEERLRDVFSRK-GEIADVKLKRKSDGKSRQFAYIGFRTEQEAQDAITY 62
Query: 99 MHRYELNGRKLVLKEETGNERRMHTSRPQHREGRNNRDDK 138
+++ ++ ++ ++ R +H + DK
Sbjct: 63 VNKCFIDTYRISVEVADPPPREEGKENTEHFSNAYAKGDK 102
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 38.3 bits (85), Expect = 0.011
Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 6/102 (5%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDD-SGKARGCGIVEFTNTEAMKKALFV 98
L V NIP + R EL++ F E+ G V V + D SG+ RG VEF + +A
Sbjct: 49 LLVRNIPLDCRPEELREPF-ERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRS 107
Query: 99 MHRYELNGRKLVLKEETGNERRMH----TSRPQHREGRNNRD 136
M+R GR++ + + + +R +R + RE +RD
Sbjct: 108 MNRRSFAGREITVVVASESRKRPEEMRVKTRTRSREPSGSRD 149
Score = 32.7 bits (71), Expect = 0.54
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 175 VFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDK-DGNSRGFAVIEYDHPVEAVQAISMF 233
+ V N+ +++E F+ G VR++ + D G RGFA +E+ +A +A
Sbjct: 49 LLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSM 108
Query: 234 DKQMLYERRMTV 245
+++ R +TV
Sbjct: 109 NRRSFAGREITV 120
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 38.3 bits (85), Expect = 0.011
Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 54 LKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVMHRYELNGRKL-VLK 112
L LF + G V+ V ++ D G++RG G V F N E KKA+ + +L +KL V K
Sbjct: 218 LHTLFSQ-YGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGK 276
Query: 113 EETGNERR 120
+ERR
Sbjct: 277 ALKKDERR 284
Score = 37.9 bits (84), Expect = 0.014
Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 175 VFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEAVQAISMFD 234
++V NLD + ++ +F G + + + V+++G S+GF +++D AV A S
Sbjct: 114 LYVKNLDSSITSSCLERMFCPFGSILSCKV-VEENGQSKGFGFVQFDTEQSAVSARSALH 172
Query: 235 KQMLYERRMTV 245
M+Y +++ V
Sbjct: 173 GSMVYGKKLFV 183
Score = 33.9 bits (74), Expect = 0.23
Identities = 19/99 (19%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 157 LSLQFLESINVQPPLV-KKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGF 215
L +F ++ +P + ++V NL ++ +++E+F G++ + + ++G S+GF
Sbjct: 287 LKQKFSDNFIAKPNMRWSNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSKGF 346
Query: 216 AVIEYDHPVEAVQAISMFDKQMLYERRMTVRMDRGVTDK 254
+ + + E+ QA + ++ + + VR+ D+
Sbjct: 347 GFVCFSNCEESKQAKRYLNGFLVDGKPIVVRVAERKEDR 385
Score = 29.9 bits (64), Expect = 3.8
Identities = 18/71 (25%), Positives = 32/71 (45%)
Query: 175 VFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEAVQAISMFD 234
V+V NL + +F G V ++ + D G SRGF + + +P A +A+
Sbjct: 204 VYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESLC 263
Query: 235 KQMLYERRMTV 245
L +++ V
Sbjct: 264 GLQLGSKKLFV 274
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 38.3 bits (85), Expect = 0.011
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 169 PPLVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNS-RGFAVIEYDHPVEAV 227
P V V+ L Y A+++E F G VR L +K + RGFA +++ +
Sbjct: 16 PHAAATVCVSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVKFALQEDVN 75
Query: 228 QAISMFDKQMLYERRMTVR 246
+AI + + + RR+TV+
Sbjct: 76 RAIELKNGSTVGGRRITVK 94
Score = 37.1 bits (82), Expect = 0.025
Identities = 29/104 (27%), Positives = 53/104 (50%), Gaps = 10/104 (9%)
Query: 42 VSNIPYEFRWTELKDLFKEKVGDVAYVELLTDD-SGKARGCGIVEFTNTEAMKKALFVMH 100
VS +PY +L++ F E VG V L+T+ S + RG V+F E + +A+ + +
Sbjct: 24 VSGLPYSITNAQLEEAFSE-VGPVRRCFLVTNKGSDEHRGFAFVKFALQEDVNRAIELKN 82
Query: 101 RYELNGRKLVLKEETG----NERRMHT----SRPQHREGRNNRD 136
+ GR++ +K+ ERR S P + +G++++D
Sbjct: 83 GSTVGGRRITVKQAAHRPSLQERRTKAAEGISVPDNSQGQSDKD 126
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 38.3 bits (85), Expect = 0.011
Identities = 20/72 (27%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 175 VFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDK-DGNSRGFAVIEYDHPVEAVQAISMF 233
+ V+ + + + I F G+++N++L +D+ G +G+A+IEY+ EA AIS
Sbjct: 97 ILVSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISAM 156
Query: 234 DKQMLYERRMTV 245
+ L + ++V
Sbjct: 157 NGAELLTQNVSV 168
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 37.9 bits (84), Expect = 0.014
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 171 LVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKD---GNSRGFAVIEYDHPVEAV 227
+ +V+V NL ++E F G V +D V +D SRGF + Y EA
Sbjct: 1 MATRVYVGNLSPTTTDDMLREAFSGYGNV--VDAIVMRDRYTDRSRGFGFVTYSSHSEAE 58
Query: 228 QAISMFDKQMLYERRMTVRM 247
A+S D + L RR++V++
Sbjct: 59 AAVSGMDGKELNGRRVSVKL 78
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 37.5 bits (83), Expect = 0.019
Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 7/104 (6%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDS-GKARGCGIVEFTNTEAMKKALFV 98
+FV IP E K+ F + G++ +++ D S G++RG G V + + + + L
Sbjct: 132 IFVGGIPSSVDDDEFKEFFMQ-FGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAK 190
Query: 99 MHRYELNGRKLVLKEETGNERRMHTSRPQHREGRNNRDDKDNWG 142
+R EL+G ++ +K+ + T+ P R G D + N+G
Sbjct: 191 GNRIELSGTQVEIKKAEPKKPNSVTT-PSKRFG----DSRSNFG 229
>At3g48840.1 68416.m05334 RNA recognition motif (RRM)-containing
protein
Length = 144
Score = 37.5 bits (83), Expect = 0.019
Identities = 18/38 (47%), Positives = 21/38 (55%)
Query: 58 FKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKA 95
F VG+V V L+ D GK GCG VEF + KKA
Sbjct: 14 FFRDVGEVVSVRLIVDHRGKHVGCGFVEFASAYKAKKA 51
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 37.1 bits (82), Expect = 0.025
Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 7/102 (6%)
Query: 172 VKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEAVQAIS 231
+K VF N +Y A ++ ++ +F+ GKV +D+ GFA + + +A AI
Sbjct: 1 MKPVFCGNFEYDARESDLERLFRKYGKVERVDM-------KAGFAFVYMEDERDAEDAIR 53
Query: 232 MFDKQMLYERRMTVRMDRGVTDKGELRLPEGLKGIGMGLGPN 273
D+ +R++ D+G G + GL P+
Sbjct: 54 ALDRFEYGRTGRRLRVEWTKNDRGGAGRSGGSRRSSSGLRPS 95
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 37.1 bits (82), Expect = 0.025
Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 7/102 (6%)
Query: 172 VKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEAVQAIS 231
+K VF N +Y A ++ ++ +F+ GKV +D+ GFA + + +A AI
Sbjct: 1 MKPVFCGNFEYDARESDLERLFRKYGKVERVDM-------KAGFAFVYMEDERDAEDAIR 53
Query: 232 MFDKQMLYERRMTVRMDRGVTDKGELRLPEGLKGIGMGLGPN 273
D+ +R++ D+G G + GL P+
Sbjct: 54 ALDRFEYGRTGRRLRVEWTKNDRGGAGRSGGSRRSSSGLRPS 95
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 37.1 bits (82), Expect = 0.025
Identities = 18/57 (31%), Positives = 33/57 (57%)
Query: 174 KVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEAVQAI 230
K+FV +L+ +A + +++E+F G V ++ L D+ SRG ++Y A+ AI
Sbjct: 212 KLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAI 268
Score = 33.9 bits (74), Expect = 0.23
Identities = 17/57 (29%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKAL 96
LFV ++ + E++++F + G V V L+ D+ ++RGCG V++++ E A+
Sbjct: 213 LFVGSLNKQATEKEVEEIFLQ-FGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAI 268
Score = 32.7 bits (71), Expect = 0.54
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDD-SGKARGCGIVEFTNTEAMKKALFV 98
LFV ++P E++ F E+ G+V V L+ D +G+ +GC V++ ++ +A+
Sbjct: 122 LFVGSVPRTATEEEIRPYF-EQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180
Query: 99 MH 100
+H
Sbjct: 181 LH 182
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 37.1 bits (82), Expect = 0.025
Identities = 18/57 (31%), Positives = 33/57 (57%)
Query: 174 KVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEAVQAI 230
K+FV +L+ +A + +++E+F G V ++ L D+ SRG ++Y A+ AI
Sbjct: 212 KLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAI 268
Score = 33.9 bits (74), Expect = 0.23
Identities = 17/57 (29%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKAL 96
LFV ++ + E++++F + G V V L+ D+ ++RGCG V++++ E A+
Sbjct: 213 LFVGSLNKQATEKEVEEIFLQ-FGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAI 268
Score = 32.7 bits (71), Expect = 0.54
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDD-SGKARGCGIVEFTNTEAMKKALFV 98
LFV ++P E++ F E+ G+V V L+ D +G+ +GC V++ ++ +A+
Sbjct: 122 LFVGSVPRTATEEEIRPYF-EQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180
Query: 99 MH 100
+H
Sbjct: 181 LH 182
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 37.1 bits (82), Expect = 0.025
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 147 REPENLNTYGLSLQFLESINVQPPLVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAV 206
R+P L LQ ++++ P K+FV L D +KE F GK+ + + +
Sbjct: 15 RQPRALQASNAMLQ--GNLSLTP---SKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVL 69
Query: 207 DKD-GNSRGFAVIEYD 221
D++ G SRGF + YD
Sbjct: 70 DRESGLSRGFGFVTYD 85
Score = 31.9 bits (69), Expect = 0.94
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 56 DLFKEKVGD----VAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVMHRYELNGR 107
+L KE G V V +L +SG +RG G V + + E A+ M EL+GR
Sbjct: 50 ELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQAMQNKELDGR 105
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 36.7 bits (81), Expect = 0.033
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGC-GIVEFTNTEAMKKALFV 98
LF+ NIP EF EL F + G V ++ D + C G V + + A + A+ +
Sbjct: 351 LFIYNIPREFGDQELAAAF-QSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAIDM 409
Query: 99 MHRYELNGRKLVLKEETGNERRMHTSRP 126
M+ L G+KL ++ + + +S P
Sbjct: 410 MNGRHLGGKKLKVQLKRDSNNGQPSSNP 437
Score = 33.5 bits (73), Expect = 0.31
Identities = 15/60 (25%), Positives = 32/60 (53%)
Query: 171 LVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEAVQAI 230
L K+FV L +A+++ +F G ++++ + S+G A ++Y+ +AV A+
Sbjct: 104 LEHKLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAM 163
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 36.7 bits (81), Expect = 0.033
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 99
++V N+P + R E++DLF K G V ++L + G VEF + + A+
Sbjct: 9 VYVGNLPGDIREREVEDLF-SKYGPVVQIDLKVPP--RPPGYAFVEFDDARDAEDAIHGR 65
Query: 100 HRYELNGRKLVLKEETGNERRMHTSRPQHREG 131
Y+ +G +L ++ G R +R G
Sbjct: 66 DGYDFDGHRLRVELAHGGRRSSDDTRGSFNGG 97
Score = 34.3 bits (75), Expect = 0.18
Identities = 29/105 (27%), Positives = 45/105 (42%), Gaps = 5/105 (4%)
Query: 173 KKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEAVQAISM 232
+ V+V NL + +++++F G V IDL V G+A +E+D +A AI
Sbjct: 7 RTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPP--RPPGYAFVEFDDARDAEDAIHG 64
Query: 233 FDKQMLYERRMTVRMDRG---VTDKGELRLPEGLKGIGMGLGPNG 274
D R+ V + G +D G +G G G G G
Sbjct: 65 RDGYDFDGHRLRVELAHGGRRSSDDTRGSFNGGGRGGGRGRGDGG 109
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 36.7 bits (81), Expect = 0.033
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 99
++V N+P + R E++DLF K G V ++L + G VEF + + A+
Sbjct: 9 VYVGNLPGDIREREVEDLF-SKYGPVVQIDLKVPP--RPPGYAFVEFDDARDAEDAIHGR 65
Query: 100 HRYELNGRKLVLKEETGNERRMHTSRPQHREG 131
Y+ +G +L ++ G R +R G
Sbjct: 66 DGYDFDGHRLRVELAHGGRRSSDDTRGSFNGG 97
Score = 34.3 bits (75), Expect = 0.18
Identities = 29/105 (27%), Positives = 45/105 (42%), Gaps = 5/105 (4%)
Query: 173 KKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEAVQAISM 232
+ V+V NL + +++++F G V IDL V G+A +E+D +A AI
Sbjct: 7 RTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPP--RPPGYAFVEFDDARDAEDAIHG 64
Query: 233 FDKQMLYERRMTVRMDRG---VTDKGELRLPEGLKGIGMGLGPNG 274
D R+ V + G +D G +G G G G G
Sbjct: 65 RDGYDFDGHRLRVELAHGGRRSSDDTRGSFNGGGRGGGRGRGDGG 109
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 36.7 bits (81), Expect = 0.033
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 99
++V N+P + R E++DLF K G V ++L + G VEF + + A+
Sbjct: 9 VYVGNLPGDIREREVEDLF-SKYGPVVQIDLKVPP--RPPGYAFVEFDDARDAEDAIHGR 65
Query: 100 HRYELNGRKLVLKEETGNERRMHTSRPQHREG 131
Y+ +G +L ++ G R +R G
Sbjct: 66 DGYDFDGHRLRVELAHGGRRSSDDTRGSFNGG 97
Score = 34.3 bits (75), Expect = 0.18
Identities = 29/105 (27%), Positives = 45/105 (42%), Gaps = 5/105 (4%)
Query: 173 KKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEAVQAISM 232
+ V+V NL + +++++F G V IDL V G+A +E+D +A AI
Sbjct: 7 RTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPP--RPPGYAFVEFDDARDAEDAIHG 64
Query: 233 FDKQMLYERRMTVRMDRG---VTDKGELRLPEGLKGIGMGLGPNG 274
D R+ V + G +D G +G G G G G
Sbjct: 65 RDGYDFDGHRLRVELAHGGRRSSDDTRGSFNGGGRGGGRGRGDGG 109
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 36.3 bits (80), Expect = 0.044
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELL-TDDSGKARGCGIVEFTNTEAMKKALFV 98
LFV+N+ +E R LK+ F G+V E++ ++ ++ G G V F + + AL
Sbjct: 191 LFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIE 250
Query: 99 MHRYELNGRKLVL 111
+ GR + L
Sbjct: 251 FQGKDFLGRPIRL 263
Score = 35.1 bits (77), Expect = 0.10
Identities = 18/72 (25%), Positives = 35/72 (48%)
Query: 174 KVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEAVQAISMF 233
++ N+ + + I+ +F+ G V +I++++ K +RG IE P EA A+
Sbjct: 95 RLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALKSL 154
Query: 234 DKQMLYERRMTV 245
+ RR+ V
Sbjct: 155 ESCEYEGRRLKV 166
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 35.9 bits (79), Expect = 0.058
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 171 LVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDK-DGNSRGFAVIEYDHPVEAVQA 229
+ K+F+ L + + + E F G+V + +D+ S+GF + + EA +A
Sbjct: 32 VASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKA 91
Query: 230 ISMFDKQMLYERRMTV 245
+ F+ Q L R + V
Sbjct: 92 LMEFNGQQLNGRTIFV 107
Score = 34.3 bits (75), Expect = 0.18
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDD-SGKARGCGIVEFTNTEAMKKALFV 98
LF+ + + L + F K G V +++ D S +++G G V F + + +KAL
Sbjct: 36 LFIGGLSFCTTEQGLSEAFS-KCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALME 94
Query: 99 MHRYELNGRKL 109
+ +LNGR +
Sbjct: 95 FNGQQLNGRTI 105
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 35.9 bits (79), Expect = 0.058
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTD-DSGKARGCGIVEFTNTEAMKKALFV 98
L+V NIP + +L D+F + G V VE+ + +G++RG G V + + K A+
Sbjct: 110 LYVCNIPRSYDIAQLLDMF-QPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIAS 168
Query: 99 MHRYELNGRKL 109
+ E+ GR++
Sbjct: 169 LDGTEVGGREM 179
>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
protein Mei2-like protein - Arabidopsis thaliana,
EMBL:D86122
Length = 907
Score = 35.5 bits (78), Expect = 0.076
Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 99
LFV N+ EL LFK+ GDV + +GK RG +V + + A +KA +
Sbjct: 213 LFVRNVDSSIEDCELGVLFKQ-FGDVRALHT----AGKNRGFIMVSYYDIRAAQKAARAL 267
Query: 100 HRYELNGRKLVLKEETGNERRMHTS 124
H L GRKL ++ E S
Sbjct: 268 HGRLLRGRKLDIRYSIPKENPKENS 292
Score = 33.9 bits (74), Expect = 0.23
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 171 LVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEAVQAI 230
L + +FV N+D + ++ +FK G VR + A G +RGF ++ Y A +A
Sbjct: 209 LSRILFVRNVDSSIEDCELGVLFKQFGDVRALHTA----GKNRGFIMVSYYDIRAAQKAA 264
Query: 231 SMFDKQMLYERRMTVR 246
++L R++ +R
Sbjct: 265 RALHGRLLRGRKLDIR 280
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 35.5 bits (78), Expect = 0.076
Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 4/112 (3%)
Query: 175 VFVANLDYKADQAKIKEVFKMAGKVRNIDLAVD-KDGNSRGFAVIEYDHPVEAVQAISMF 233
+FV L + + ++EV G+++N+ L G SRG+ +EY+ E ++A
Sbjct: 66 LFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYEDA 125
Query: 234 DKQMLYERRMTVRMDRGVTDKGELRLPEGLKGIGMGLGPNGEPLRDVARNLP 285
++ R + V +R G +P L G G+G LR R+ P
Sbjct: 126 HHSLIDGREIIVDYNRQQLMPG--WIPRRLGG-GLGGRKESGQLRFGGRDRP 174
Score = 29.1 bits (62), Expect = 6.6
Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDD-SGKARGCGIVEFTNTEAMKKALFV 98
LFV + + L+++ K G + + L+ +G +RG G VE+ + M +A
Sbjct: 66 LFVGRLSHHTTEDTLREVMS-KYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYED 124
Query: 99 MHRYELNGRKLVL 111
H ++GR++++
Sbjct: 125 AHHSLIDGREIIV 137
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 35.1 bits (77), Expect = 0.10
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDD-SGKARGCGIVEFTNTEAMKKALFV 98
L+VS + + L+D F E+ G++ ++ ++ D + + +G + + E KA+
Sbjct: 79 LYVSGLSFRTTEDTLRDTF-EQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQG 137
Query: 99 MHRYELNGRKLVLKEETGNERRMHTSRPQ 127
MH L+GR ++ EE M ++P+
Sbjct: 138 MHGKFLDGR-VIFVEEAKTRSDMSRAKPR 165
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 34.7 bits (76), Expect = 0.13
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGK-ARGCGIVEFTNTEAMKKALFV 98
+ V N+P+ LK F G++A V+L+ D++ K ++G ++FT+ + A+
Sbjct: 42 IMVRNLPFSTSEDFLKREFSA-FGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIET 100
Query: 99 MHRYELNGRKLVL 111
M R NGR + +
Sbjct: 101 MDRRMYNGRMIYI 113
>At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 173
Score = 34.7 bits (76), Expect = 0.13
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 175 VFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNS-RGFAVIEYDHPVEAVQAISMF 233
V++ N+D + + ++ AG+V ++ + DK+ + +GFA EY+ A A+ +F
Sbjct: 9 VYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEEIADYAVKLF 68
Query: 234 DKQM-LYERRM 243
+ LY R +
Sbjct: 69 SGLVSLYNRTL 79
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 34.7 bits (76), Expect = 0.13
Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 2/102 (1%)
Query: 173 KKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEAVQAISM 232
+ ++V NL + +I+++F G++ +I+L V + +E++H +A AI
Sbjct: 7 RSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPP--RPPCYCFVEFEHSRDAEDAIKG 64
Query: 233 FDKQMLYERRMTVRMDRGVTDKGELRLPEGLKGIGMGLGPNG 274
D L R+ V + G + G G G G G G
Sbjct: 65 RDGYNLDGCRLRVELAHGGRGQSSSDRRGGYGGGGSGYGGGG 106
Score = 28.7 bits (61), Expect = 8.8
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 99
++V N+P + R E++D+F K G + +EL C VEF ++ + A+
Sbjct: 9 IYVGNLPGDIREHEIEDIF-YKYGRIVDIELKVPPRPPCY-C-FVEFEHSRDAEDAIKGR 65
Query: 100 HRYELNGRKLVLKEETGNERRMHTSR 125
Y L+G +L ++ G + + R
Sbjct: 66 DGYNLDGCRLRVELAHGGRGQSSSDR 91
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 34.7 bits (76), Expect = 0.13
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 173 KKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDK-DGNSRGFAVIEYDHPVEAVQAI 230
+K++V+N+ D K+ E F G++ L +DK G +GFA+ Y A +A+
Sbjct: 227 RKIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKAL 285
Score = 30.7 bits (66), Expect = 2.2
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 173 KKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDK-DGNSRGFAVIEYDHPVEAVQAIS 231
+K+FV L + + + FK G++ + VDK G S+G+ I + A A+
Sbjct: 128 RKIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALK 187
Query: 232 MFDKQM 237
K++
Sbjct: 188 QPQKKI 193
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 34.3 bits (75), Expect = 0.18
Identities = 17/77 (22%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 175 VFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSR-GFAVIEYDHPVEAVQAISMF 233
V++ N+ + + ++ E+F AG+++ I + +DK+ + GF + + + A+
Sbjct: 36 VYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTEDAVKYI 95
Query: 234 DKQMLYERRMTVRMDRG 250
+L +R + V D G
Sbjct: 96 SGTILDDRPIRVDFDWG 112
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 34.3 bits (75), Expect = 0.18
Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTD-DSGKARGCGIVEFTNTEAMKKALFV 98
+FV + E +L+ F + GD+ +++ + D+G++RG G + F + AM +++
Sbjct: 9 IFVGGLSPEVTDRDLERAFS-RFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIRE 67
Query: 99 MHRYELNGR 107
MH + R
Sbjct: 68 MHGRDFGDR 76
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 34.3 bits (75), Expect = 0.18
Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
Query: 172 VKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEAVQAIS 231
+K VF N +Y A + ++ +F+ GKV +D+ GFA + + +A AI
Sbjct: 1 MKPVFCGNFEYDAREGDLERLFRKYGKVERVDM-------KAGFAFVYMEDERDAEDAIR 53
Query: 232 MFDKQMLYERRMTVRMDRGVTDKG 255
D+ + +R++ +++G
Sbjct: 54 ALDRFEFGRKGRRLRVEWTKSERG 77
>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
Glycine-rich RNA-binding protein from {Sinapis alba}
SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
thaliana} SP|Q03251; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 117
Score = 34.3 bits (75), Expect = 0.18
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 176 FVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKD-GNSRGFAVIEYDHPVEAVQAISMFD 234
FV LD D+ + ++F G V + + D+D G SR F + ++ AI + D
Sbjct: 10 FVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDAIMIMD 69
Score = 32.3 bits (70), Expect = 0.71
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 41 FVSNIPYEFRWTELKDLFKEKVGDVAYVELLTD-DSGKARGCGIVEFTNTEAMKKALFVM 99
FV + + +L D+F K G+V +++ D D+GK+R G V F ++M A+ +M
Sbjct: 10 FVRGLDQDTDEKDLTDIFS-KFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDAIMIM 68
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 34.3 bits (75), Expect = 0.18
Identities = 19/85 (22%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 173 KKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEAVQAISM 232
++++V NL + +++VF+ G V + + D+ G +GF +++ +A A+++
Sbjct: 285 RRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNALNL 344
Query: 233 FDKQMLYERRMTVRMDRGVTDKGEL 257
+ + R + V VTD+ E+
Sbjct: 345 NGQLEIAGRAIKV---SAVTDQTEV 366
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 34.3 bits (75), Expect = 0.18
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 3/97 (3%)
Query: 161 FLESINVQ-PPLVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKD-GNSRGFAVI 218
FL+S++V + FV L + D+ I+ F G+V + + +D++ G S+GF +
Sbjct: 31 FLKSLDVAYADNEYRCFVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFV 90
Query: 219 EYDHPVEAVQAISMFDKQMLYERRMTVRMDRGVTDKG 255
+ AI + Q L R +T + RG +G
Sbjct: 91 TFKDEDSMRTAIDRMNGQELDGRNITAQA-RGSGTRG 126
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 34.3 bits (75), Expect = 0.18
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTD-DSGKARGCGIVEFTNTEAMKKALFV 98
+FV + ++ +L+ F ++ G + +++ D+G+ RG G + FT+ A+
Sbjct: 14 IFVGGLSWDVTERQLESTF-DRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72
Query: 99 MHRYELNGRKLV 110
MH EL G K++
Sbjct: 73 MHGREL-GNKVI 83
Score = 32.3 bits (70), Expect = 0.71
Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 4/103 (3%)
Query: 171 LVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKD-GNSRGFAVIEYDHPVEAVQA 229
L ++FV L + + +++ F GK+ + V +D G RGF I + A A
Sbjct: 10 LESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDA 69
Query: 230 ISMFDKQMLYERRMTVRMDR---GVTDKGELRLPEGLKGIGMG 269
I + L + ++V G D +L+ G G G
Sbjct: 70 IKHMHGRELGNKVISVNKAEPKVGGEDVDQLKKGGGYSSRGKG 112
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 34.3 bits (75), Expect = 0.18
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTD-DSGKARGCGIVEFTNTEAMKKALFV 98
+FV + ++ +L+ F ++ G + +++ D+G+ RG G + FT+ A+
Sbjct: 14 IFVGGLSWDVTERQLESTF-DRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72
Query: 99 MHRYELNGRKLV 110
MH EL G K++
Sbjct: 73 MHGREL-GNKVI 83
Score = 32.3 bits (70), Expect = 0.71
Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 4/103 (3%)
Query: 171 LVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKD-GNSRGFAVIEYDHPVEAVQA 229
L ++FV L + + +++ F GK+ + V +D G RGF I + A A
Sbjct: 10 LESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDA 69
Query: 230 ISMFDKQMLYERRMTVRMDR---GVTDKGELRLPEGLKGIGMG 269
I + L + ++V G D +L+ G G G
Sbjct: 70 IKHMHGRELGNKVISVNKAEPKVGGEDVDQLKKGGGYSSRGKG 112
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 34.3 bits (75), Expect = 0.18
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDD-SGKARGCGIVEFTNTEAMKKALFV 98
+FV + +E +K F E+ G++ ++TD SG+++G G V F EA + A V
Sbjct: 15 VFVGGLAWETHKETMKKHF-EQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSAC-V 72
Query: 99 MHRYELNGRKLVLKEETGNERRMHTSRPQHREG 131
++GR+ + +R S P H G
Sbjct: 73 DATPVIDGRRANCNLASLGLQRSKPSTPNHGGG 105
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 34.3 bits (75), Expect = 0.18
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDD-SGKARGCGIVEFTNTEAMKKALFV 98
+FV + +E +K F E+ G++ ++TD SG+++G G V F EA + A V
Sbjct: 15 VFVGGLAWETHKETMKKHF-EQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSAC-V 72
Query: 99 MHRYELNGRKLVLKEETGNERRMHTSRPQHREG 131
++GR+ + +R S P H G
Sbjct: 73 DATPVIDGRRANCNLASLGLQRSKPSTPNHGGG 105
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 34.3 bits (75), Expect = 0.18
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDD-SGKARGCGIVEFTNTEAMKKALFV 98
+FV + +E +K F E+ G++ ++TD SG+++G G V F EA + A V
Sbjct: 15 VFVGGLAWETHKETMKKHF-EQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSAC-V 72
Query: 99 MHRYELNGRKLVLKEETGNERRMHTSRPQHREG 131
++GR+ + +R S P H G
Sbjct: 73 DATPVIDGRRANCNLASLGLQRSKPSTPNHGGG 105
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 33.9 bits (74), Expect = 0.23
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 168 QPPLVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDK-DGNSRGFAVIEYDHPVEA 226
+ P+ +K+FV L + + E FK G++ + DK G S+G+ I Y A
Sbjct: 135 EDPVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGA 194
Query: 227 VQAISMFDKQM 237
A+ K++
Sbjct: 195 RNALKQPQKKI 205
Score = 33.1 bits (72), Expect = 0.41
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 173 KKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDK-DGNSRGFAVIEYDHPVEAVQAI 230
KK++V+N+ + D K+ F G++ L +DK G +GF + Y A +A+
Sbjct: 245 KKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRAL 303
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 33.9 bits (74), Expect = 0.23
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 168 QPPLVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDK-DGNSRGFAVIEYDHPVEA 226
+ P+ +K+FV L + + E FK G++ + DK G S+G+ I Y A
Sbjct: 135 EDPVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGA 194
Query: 227 VQAISMFDKQM 237
A+ K++
Sbjct: 195 RNALKQPQKKI 205
Score = 33.1 bits (72), Expect = 0.41
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 173 KKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDK-DGNSRGFAVIEYDHPVEAVQAI 230
KK++V+N+ + D K+ F G++ L +DK G +GF + Y A +A+
Sbjct: 245 KKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRAL 303
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 33.9 bits (74), Expect = 0.23
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 168 QPPLVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDK-DGNSRGFAVIEYDHPVEA 226
+ P+ +K+FV L + + E FK G++ + DK G S+G+ I Y A
Sbjct: 135 EDPVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGA 194
Query: 227 VQAISMFDKQM 237
A+ K++
Sbjct: 195 RNALKQPQKKI 205
Score = 33.1 bits (72), Expect = 0.41
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 173 KKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDK-DGNSRGFAVIEYDHPVEAVQAI 230
KK++V+N+ + D K+ F G++ L +DK G +GF + Y A +A+
Sbjct: 245 KKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRAL 303
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 33.9 bits (74), Expect = 0.23
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 172 VKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDK-DGNSRGFAVIEYDHPVEAVQAI 230
+ K++VA + A + I++VF+ G V I L DK G + I+Y E AI
Sbjct: 109 IAKLYVAPISKTATEYDIRQVFEKYGNVTEIILPKDKMTGERAAYCFIKYKKVEEGNAAI 168
Query: 231 SMFDKQMLYERRM 243
+ +Q + M
Sbjct: 169 AALTEQFTFPGEM 181
Score = 33.5 bits (73), Expect = 0.31
Identities = 19/64 (29%), Positives = 35/64 (54%)
Query: 167 VQPPLVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEA 226
VQ P K++V L+ + + ++ EVF G + +I +A+D RG+A +++ A
Sbjct: 201 VQLPDNPKLYVRCLNKQTTKMEVNEVFSRYGIIEDIYMALDDMKICRGYAFVQFSCKEMA 260
Query: 227 VQAI 230
+ AI
Sbjct: 261 LAAI 264
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 33.9 bits (74), Expect = 0.23
Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSG-KARGCGIVEFTNTEAMKKALFV 98
LFV I + L F + G V V+++ D + +G V F++ E +KAL
Sbjct: 23 LFVKGISFSSTEETLTQAFSQ-YGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLE 81
Query: 99 MHRYELNGRKLVLKEETGNERRMHTSRPQHREG 131
++ ++GR ++L + ++P H G
Sbjct: 82 LNAQLVDGRVVILDTTKAAKHNPPDTKPNHAGG 114
Score = 32.7 bits (71), Expect = 0.54
Identities = 15/65 (23%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 175 VFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDK-DGNSRGFAVIEYDHPVEAVQAISMF 233
+FV + + + + + + F G+V +D+ +DK +GFA + + EA +A+
Sbjct: 23 LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLEL 82
Query: 234 DKQML 238
+ Q++
Sbjct: 83 NAQLV 87
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 33.5 bits (73), Expect = 0.31
Identities = 17/63 (26%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Query: 172 VKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEAVQAIS 231
+ +V+V NLD + + ++++ F+ G VR++ +A G+A ++++ P +A AI
Sbjct: 1 MSRVYVGNLDPRVTERELEDEFRAFGVVRSVWVA----RRPPGYAFLDFEDPRDARDAIR 56
Query: 232 MFD 234
D
Sbjct: 57 ALD 59
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 33.5 bits (73), Expect = 0.31
Identities = 15/60 (25%), Positives = 32/60 (53%)
Query: 171 LVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEAVQAI 230
L K+FV L +A+++ +F G ++++ + S+G A ++Y+ +AV A+
Sbjct: 104 LEHKLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAM 163
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 33.5 bits (73), Expect = 0.31
Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 169 PPL-VKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDK-DGNSRGFAVIEY 220
PP+ KK+F+ L + + ++ F+ G++ + + +DK S+G+A +EY
Sbjct: 277 PPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEY 330
Score = 32.7 bits (71), Expect = 0.54
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDD-SGKARGCGIVEFTNTEAMKKALFV 98
LF++ + + L+ F E G++ V+++ D S +++G +E+T EA AL
Sbjct: 284 LFITGLSFYTSEKTLRAAF-EGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKE 342
Query: 99 MHRYELNGRKLVLKEETGNERRMHTSRP 126
M+ +NG +V+ R + S+P
Sbjct: 343 MNGKIINGWMIVVDVAKTKPFRQNRSQP 370
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 33.5 bits (73), Expect = 0.31
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTD-DSGKARGCGIVEFTNTEAMKKAL 96
+FV IP ELKD F K G+V +++ D ++ ++RG G V F + E + + L
Sbjct: 111 IFVGGIPSTVTEDELKDFFA-KYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELL 167
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 33.5 bits (73), Expect = 0.31
Identities = 20/96 (20%), Positives = 45/96 (46%), Gaps = 4/96 (4%)
Query: 174 KVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDK-DGNSRGFAVIEYDHPVEAVQAIS- 231
K+F+ + + ++ ++KE F G+V + D+ G +RGF + + P A I+
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 232 --MFDKQMLYERRMTVRMDRGVTDKGELRLPEGLKG 265
D +++ ++ R D+ + ++ +G G
Sbjct: 67 KHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPG 102
Score = 33.1 bits (72), Expect = 0.41
Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 5/103 (4%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTD-DSGKARGCGIVEFTNTEAMKKALFV 98
LF+ I ++ LK+ F G+V +L D +G+ARG G V F + + +
Sbjct: 8 LFIGGISWDTNEERLKEYFSS-FGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 99 MHRYE---LNGRKLVLKEETGNERRMHTSRPQHREGRNNRDDK 138
H + + +K V +++ R ++S Q G R K
Sbjct: 67 KHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRK 109
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 33.5 bits (73), Expect = 0.31
Identities = 20/96 (20%), Positives = 45/96 (46%), Gaps = 4/96 (4%)
Query: 174 KVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDK-DGNSRGFAVIEYDHPVEAVQAIS- 231
K+F+ + + ++ ++KE F G+V + D+ G +RGF + + P A I+
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 232 --MFDKQMLYERRMTVRMDRGVTDKGELRLPEGLKG 265
D +++ ++ R D+ + ++ +G G
Sbjct: 67 KHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPG 102
Score = 33.1 bits (72), Expect = 0.41
Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 5/103 (4%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTD-DSGKARGCGIVEFTNTEAMKKALFV 98
LF+ I ++ LK+ F G+V +L D +G+ARG G V F + + +
Sbjct: 8 LFIGGISWDTNEERLKEYFSS-FGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 99 MHRYE---LNGRKLVLKEETGNERRMHTSRPQHREGRNNRDDK 138
H + + +K V +++ R ++S Q G R K
Sbjct: 67 KHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRK 109
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 33.5 bits (73), Expect = 0.31
Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 173 KKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKD-GNSRGFAVIEYDHPVEAVQAIS 231
+ +FV L + +K F++ G++ + +DKD G ++GF + + A A+
Sbjct: 163 RNIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALK 222
Query: 232 MFDKQMLYERRMT 244
+K+M Y R ++
Sbjct: 223 NPEKRM-YNRTVS 234
Score = 28.7 bits (61), Expect = 8.8
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTD-DSGKARGCGIVEFTNTEAMKKAL 96
+FV + ++ LK F E G++ ++ D D+G+A+G G V F + + AL
Sbjct: 165 IFVRGLGWDTTHENLKAAF-EVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAAL 221
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 33.5 bits (73), Expect = 0.31
Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 173 KKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKD-GNSRGFAVIEYDHPVEAVQAIS 231
+ +FV + Q +K F+ G++ + +DKD G +G+ + + A +A+
Sbjct: 408 RNIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALK 467
Query: 232 MFDKQMLYER 241
+K+M Y R
Sbjct: 468 RPEKRM-YNR 476
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 33.1 bits (72), Expect = 0.41
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 54 LKDLFKEKVGDVAYVELLTDD-SGKARGCGIVEFTNTEAMKKALFVMHRYELNG 106
LKD F G V ++T+ +G++RG G V F + ++ A+ M+ ELNG
Sbjct: 47 LKDAFSSFNG-VTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAMNGQELNG 99
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 33.1 bits (72), Expect = 0.41
Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 99
++V +PY+ ++ +F G V V+++ D S + + G V F+N + A+ M
Sbjct: 9 VYVGGLPYDITEEAVRRVFSI-YGSVLTVKIVNDRSVRGKCYGFVTFSNRRSADDAIEDM 67
Query: 100 HRYELNGRKLVLKEETGNERRMH 122
+ GR + + + T RM+
Sbjct: 68 DGKSIGGRAVRVNDVTTRGGRMN 90
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 33.1 bits (72), Expect = 0.41
Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 12/110 (10%)
Query: 174 KVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEAVQAISMF 233
+++V L + ++ +F G+VR++D+ R +A +E+ P +A A
Sbjct: 12 RLYVGRLSSRTRTRDLERLFSRYGRVRDVDM-------KRDYAFVEFSDPRDADDARYYL 64
Query: 234 DKQMLYERRMTVRMDRGV----TDKGELRLPEGLKGIGMGLGPNGEPLRD 279
D + R+TV RG D G P G G G +G RD
Sbjct: 65 DGRDFDGSRITVEASRGAPRGSRDNGSRGPPPG-SGRCFNCGVDGHWARD 113
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 33.1 bits (72), Expect = 0.41
Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
Query: 172 VKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDK-DGNSRGFAVIEYDHPVEAVQAI 230
++K++VAN+ + ++ F G V L DK G SRGFA+ Y E QA
Sbjct: 166 MRKIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVY-KTAEGAQAA 224
Query: 231 SMFDKQMLYERRMTVRMDRGVTDKGELRLPEGLKGIGMGLG 271
+++ + + ++ G+ +P+ G G G G
Sbjct: 225 LADPVKVIDGKHLNCKLAVDGKKGGKPGMPQAQDG-GSGHG 264
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 33.1 bits (72), Expect = 0.41
Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
Query: 172 VKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDK-DGNSRGFAVIEYDHPVEAVQAI 230
++K++VAN+ + ++ F G V L DK G SRGFA+ Y E QA
Sbjct: 166 MRKIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVY-KTAEGAQAA 224
Query: 231 SMFDKQMLYERRMTVRMDRGVTDKGELRLPEGLKGIGMGLG 271
+++ + + ++ G+ +P+ G G G G
Sbjct: 225 LADPVKVIDGKHLNCKLAVDGKKGGKPGMPQAQDG-GSGHG 264
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 33.1 bits (72), Expect = 0.41
Identities = 24/106 (22%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
Query: 173 KKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDK-DGNSRGFAVIEYDHPVEAVQAIS 231
+K+FV L ++ + + VF+ G++ + +DK G ++GF + + A +A+
Sbjct: 104 RKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALK 163
Query: 232 MFDKQMLYERRMTVRMDRGVTDKGELRLPEGLKGIGMG-LGPNGEP 276
K++L G G+ G I MG + +G+P
Sbjct: 164 EPKKRILNRTATCQLASMGPAASGKGHDQPGPVKISMGSMANHGQP 209
Score = 30.7 bits (66), Expect = 2.2
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDS-GKARGCGIVEFTNTEAMKKAL 96
+FV +P+E L +F E G++ ++ D + GKA+G G V F + K+AL
Sbjct: 106 IFVYGLPWETTRETLVGVF-EGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEAL 162
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 33.1 bits (72), Expect = 0.41
Identities = 24/106 (22%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
Query: 173 KKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDK-DGNSRGFAVIEYDHPVEAVQAIS 231
+K+FV L ++ + + VF+ G++ + +DK G ++GF + + A +A+
Sbjct: 104 RKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALK 163
Query: 232 MFDKQMLYERRMTVRMDRGVTDKGELRLPEGLKGIGMG-LGPNGEP 276
K++L G G+ G I MG + +G+P
Sbjct: 164 EPKKRILNRTATCQLASMGPAASGKGHDQPGPVKISMGSMANHGQP 209
Score = 30.7 bits (66), Expect = 2.2
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDS-GKARGCGIVEFTNTEAMKKAL 96
+FV +P+E L +F E G++ ++ D + GKA+G G V F + K+AL
Sbjct: 106 IFVYGLPWETTRETLVGVF-EGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEAL 162
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 32.7 bits (71), Expect = 0.54
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 41 FVSNIPYEFRWTELKDLFKEKVGDVAYVELLTD-DSGKARGCGIVEFTNTEAMKKALFVM 99
FV + + +L+ F + GDV +++ D +SG++RG G V F + +AM+ A+ M
Sbjct: 9 FVGGLAWATNDEDLQRTFSQ-FGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEM 67
Query: 100 H 100
+
Sbjct: 68 N 68
>At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 817
Score = 32.7 bits (71), Expect = 0.54
Identities = 21/97 (21%), Positives = 44/97 (45%), Gaps = 1/97 (1%)
Query: 41 FVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVMH 100
F+SN+ + + +++ F + G + L D+GK RG +F + E + A+ +
Sbjct: 654 FISNLSVKAQEEDIRKFFGDDGGVDSIRILHHKDTGKPRGLAYADFVDDEHLAAAI-AKN 712
Query: 101 RYELNGRKLVLKEETGNERRMHTSRPQHREGRNNRDD 137
R G+K+ + + + +R + +G N D
Sbjct: 713 RKMFFGKKISIARSNPKKGKKEFTRRGNVDGSGNSKD 749
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 32.7 bits (71), Expect = 0.54
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 174 KVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDK-DGNSRGFAVIEYDHP 223
K+FV + ++ D+ K++E F G+V + DK G RGF + + P
Sbjct: 7 KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDP 57
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis];
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 271
Score = 32.7 bits (71), Expect = 0.54
Identities = 16/58 (27%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTD-DSGKARGCGIVEFTNTEAMKKAL 96
+FV + +E E++ F E+ G++ ++TD ++GK++G G V F +++ +A+
Sbjct: 19 VFVGGLAWETPTDEMRRYF-EQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAV 75
Score = 30.7 bits (66), Expect = 2.2
Identities = 14/59 (23%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 174 KVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKD-GNSRGFAVIEYDHPVEAVQAIS 231
KVFV L ++ +++ F+ G++ + DK+ G S+G+ + + A +A++
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVA 76
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis];
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 287
Score = 32.7 bits (71), Expect = 0.54
Identities = 16/58 (27%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTD-DSGKARGCGIVEFTNTEAMKKAL 96
+FV + +E E++ F E+ G++ ++TD ++GK++G G V F +++ +A+
Sbjct: 19 VFVGGLAWETPTDEMRRYF-EQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAV 75
Score = 30.7 bits (66), Expect = 2.2
Identities = 14/59 (23%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 174 KVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKD-GNSRGFAVIEYDHPVEAVQAIS 231
KVFV L ++ +++ F+ G++ + DK+ G S+G+ + + A +A++
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVA 76
>At1g52000.1 68414.m05866 jacalin lectin family protein similar to
myrosinase binding protein [Brassica napus] GI:1711296,
myrosinase-binding protein homolog [Arabidopsis
thaliana] GI:2997767; contains Pfam profile: PF01419
jacalin-like lectin domain
Length = 730
Score = 32.7 bits (71), Expect = 0.54
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 372 TAQANVNQAASLGIGNNEMNSNV-LTSGVMGGNQMNSGPLSNISGTSRPLGVSVPNQGYG 430
+ A N AS G GN E SN+ T GG++ N G + SG G + N G G
Sbjct: 259 SGSARTNPGASAG-GNGETVSNIGDTESNAGGSKSNDGANNGASGIESNAGSTGTNFGAG 317
Query: 431 RDTGVQQSTRD 441
G+ + D
Sbjct: 318 GTGGIGDTESD 328
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 32.7 bits (71), Expect = 0.54
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 99
++V N+P + R E++DLF K G + ++L + G VEF + A++
Sbjct: 9 IYVGNLPGDIRKCEVEDLF-YKYGPIVDIDLKIPP--RPPGYAFVEFEDPRDADDAIYGR 65
Query: 100 HRYELNGRKLVLKEETGNER 119
Y+ +G +L ++ G R
Sbjct: 66 DGYDFDGCRLRVEIAHGGRR 85
>At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 32.3 bits (70), Expect = 0.71
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 13/83 (15%)
Query: 40 LFVSNIPYEFRWTELKDLF---------KEKVG---DVAY-VELLTDDSGKARGCGIVEF 86
+++SN+P + ELKDLF K+K G Y +++ TD+ G +G + +
Sbjct: 282 IYISNLPPDVTTDELKDLFGGIGQVGRIKQKRGYKDQWPYNIKIYTDEKGNYKGDACLAY 341
Query: 87 TNTEAMKKALFVMHRYELNGRKL 109
+ A A + YE+ G K+
Sbjct: 342 EDPSAAHSAGGFFNNYEMRGNKI 364
>At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 32.3 bits (70), Expect = 0.71
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 13/83 (15%)
Query: 40 LFVSNIPYEFRWTELKDLF---------KEKVG---DVAY-VELLTDDSGKARGCGIVEF 86
+++SN+P + ELKDLF K+K G Y +++ TD+ G +G + +
Sbjct: 282 IYISNLPPDVTTDELKDLFGGIGQVGRIKQKRGYKDQWPYNIKIYTDEKGNYKGDACLAY 341
Query: 87 TNTEAMKKALFVMHRYELNGRKL 109
+ A A + YE+ G K+
Sbjct: 342 EDPSAAHSAGGFFNNYEMRGNKI 364
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 32.3 bits (70), Expect = 0.71
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDS-GKARGCGIVEFTNTEAMKKALFV 98
LF+ I ++ L+D F GDV ++ D + G+ARG G + F + ++ +
Sbjct: 8 LFIGGISWDTDEERLRDYFSN-YGDVVEAVIMRDRATGRARGFGFIVFADPCVSERV--I 64
Query: 99 MHRYELNGRKLVLKE 113
M ++ ++GR + K+
Sbjct: 65 MDKHIIDGRTVEAKK 79
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 32.3 bits (70), Expect = 0.71
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDS-GKARGCGIVEFTNTEAMKKALFV 98
LF+ I ++ L+D F GDV ++ D + G+ARG G + F + ++ +
Sbjct: 8 LFIGGISWDTDEERLRDYFSN-YGDVVEAVIMRDRATGRARGFGFIVFADPCVSERV--I 64
Query: 99 MHRYELNGRKLVLKE 113
M ++ ++GR + K+
Sbjct: 65 MDKHIIDGRTVEAKK 79
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 32.3 bits (70), Expect = 0.71
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDS-GKARGCGIVEFTNTEAMKKALFV 98
LF+ I ++ L+D F GDV ++ D + G+ARG G + F + ++ +
Sbjct: 8 LFIGGISWDTDEERLRDYFSN-YGDVVEAVIMRDRATGRARGFGFIVFADPCVSERV--I 64
Query: 99 MHRYELNGRKLVLKE 113
M ++ ++GR + K+
Sbjct: 65 MDKHIIDGRTVEAKK 79
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 32.3 bits (70), Expect = 0.71
Identities = 19/75 (25%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTD-DSGKARGCGIVEFTNTEAMKKALFV 98
LF+ I ++ L++ F K GD+ ++ D +G+ARG G + F + ++ +
Sbjct: 17 LFIGGISWDTDEERLQEYFG-KYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERV--I 73
Query: 99 MHRYELNGRKLVLKE 113
M ++ ++GR + K+
Sbjct: 74 MDKHIIDGRTVEAKK 88
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 32.3 bits (70), Expect = 0.71
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTD-DSGKARGCGIVEFTNTEAMKKALFV 98
LFVS + +L+D F G + ++TD DSG+++G G V + E +KA
Sbjct: 36 LFVSGLSRLTTNEKLQDAFAS-FGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAE 94
Query: 99 MHRYELNG 106
M+ L+G
Sbjct: 95 MNAKFLDG 102
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 32.3 bits (70), Expect = 0.71
Identities = 24/100 (24%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDD-SGKARGCGIVEFTNTEAMKKALFV 98
+FV +P ELK+ F GD+ +++ D +G++RG G V F +++ +
Sbjct: 159 IFVGGLPPLLEEDELKNYFCV-YGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSD 217
Query: 99 MHRYELNGRKLVLKE-ETGNERRMHTSRPQHREGRNNRDD 137
+EL +++ +K E R ++ R G+ +++D
Sbjct: 218 GKVHELGDKQVEIKRAEPKRTGRDNSFRSYGASGKYDQED 257
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 32.3 bits (70), Expect = 0.71
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 167 VQPPLVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGN-SRGFAVIEYDHPVE 225
VQ LV + V +L ++A +KE+F G+V ++++A+D+ N RG +E+ +
Sbjct: 94 VQESLV--LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARAD 151
Query: 226 AVQA 229
A +A
Sbjct: 152 AEKA 155
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 32.3 bits (70), Expect = 0.71
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 167 VQPPLVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGN-SRGFAVIEYDHPVE 225
VQ LV + V +L ++A +KE+F G+V ++++A+D+ N RG +E+ +
Sbjct: 94 VQESLV--LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARAD 151
Query: 226 AVQA 229
A +A
Sbjct: 152 AEKA 155
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 31.9 bits (69), Expect = 0.94
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 172 VKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDK-DGNSRGFAVIEYDHPVEAVQAI 230
V K+FV NL ++ ++ F+ G+V + ++ + G S+G+ I + V V+A+
Sbjct: 11 VTKIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVRAL 70
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 31.9 bits (69), Expect = 0.94
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Query: 174 KVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEAVQAISMF 233
+++V L + ++ +F G+VR++D+ R +A +E+ P +A A
Sbjct: 12 RLYVGRLSSRTRTRDLERLFSRYGRVRDVDM-------KRDYAFVEFGDPRDADDARHYL 64
Query: 234 DKQMLYERRMTVRMDRG 250
D + R+TV RG
Sbjct: 65 DGRDFDGSRITVEFSRG 81
>At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
G3BP ras-GTPase-activating protein SH3-domain binding
protein, Mus musculus, EMBL:MMU65313
Length = 460
Score = 31.5 bits (68), Expect = 1.2
Identities = 24/82 (29%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARG-C-GIVEFTNTEAMKKALF 97
++V N+P++ T+L+++FK G + + E + S K +G C G VEF T + K++
Sbjct: 295 IYVRNLPFDSTPTQLEEVFK-NFGAIKH-EGIQVRSNKQQGFCFGFVEF-ETSSGKQSAL 351
Query: 98 VMHRYELNGRKLVLKEETGNER 119
+ R+ V++E+ N R
Sbjct: 352 EASPVTIGDRQAVVEEKKTNSR 373
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 31.5 bits (68), Expect = 1.2
Identities = 20/95 (21%), Positives = 41/95 (43%), Gaps = 7/95 (7%)
Query: 172 VKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEAVQAIS 231
++ V+V N DY + ++ +F G+V+ +D+ G+A + ++ +A AI
Sbjct: 1 MRHVYVGNFDYDTRHSDLERLFSKFGRVKRVDM-------KSGYAFVYFEDERDAEDAIR 53
Query: 232 MFDKQMLYERRMTVRMDRGVTDKGELRLPEGLKGI 266
D R + ++ +GE P K +
Sbjct: 54 RTDNTTFGYGRRKLSVEWAKDFQGERGKPRDGKAV 88
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 31.5 bits (68), Expect = 1.2
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 174 KVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDK-DGNSRGFAVIEYDHPVEAVQAISM 232
K+F+ + + D+ ++E F G+V + + +K G RGF + + P AV +
Sbjct: 7 KLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDP--AVIDRVL 64
Query: 233 FDKQMLYERRMTVR 246
DK + R + V+
Sbjct: 65 QDKHHIDNRDVDVK 78
>At5g60980.1 68418.m07649 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
G3BP ras-GTPase-activating protein SH3-domain binding
protein, Mus musculus, EMBL:MMU65313
Length = 459
Score = 31.1 bits (67), Expect = 1.6
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGC-GIVEFTNTEAMKKALFV 98
++V N+P++ T+L+++FK G + + E + S K C G VEF T + K++
Sbjct: 295 IYVRNLPFDSTPTQLEEVFK-NFGAIKH-EGIQVRSNKQGFCFGFVEF-ETSSGKQSALE 351
Query: 99 MHRYELNGRKLVLKEETGNER 119
+ R+ V++E+ N R
Sbjct: 352 ASPVTIGDRQAVVEEKKTNSR 372
Score = 30.7 bits (66), Expect = 2.2
Identities = 20/75 (26%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 175 VFVANLDYKADQAKIKEVFKMAGKVRN--IDLAVDKDGNSRGFAVIEYDHPVE-AVQA-- 229
++V NL + + +++EVFK G +++ I + +K G GF E + A++A
Sbjct: 295 IYVRNLPFDSTPTQLEEVFKNFGAIKHEGIQVRSNKQGFCFGFVEFETSSGKQSALEASP 354
Query: 230 ISMFDKQMLYERRMT 244
+++ D+Q + E + T
Sbjct: 355 VTIGDRQAVVEEKKT 369
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 31.1 bits (67), Expect = 1.6
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 174 KVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKD-GNSRGFAVIEYDHPVEAVQA 229
KVFV L ++ +++ F+ G++ + DK+ G S+G+ + + P A +A
Sbjct: 25 KVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRA 81
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 31.1 bits (67), Expect = 1.6
Identities = 15/58 (25%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDS-GKARGCGIVEFTNTEAMKKAL 96
+FV + +E E++ F ++ G++ ++TD + GK++G G V F ++++ +A+
Sbjct: 19 VFVGGLAWETPTDEMRRYF-DQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAV 75
Score = 28.7 bits (61), Expect = 8.8
Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 174 KVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDK-DGNSRGFAVIEYDHPVEAVQAIS 231
KVFV L ++ +++ F G++ + DK G S+G+ + + A +A++
Sbjct: 18 KVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVA 76
>At1g13730.1 68414.m01612 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 428
Score = 31.1 bits (67), Expect = 1.6
Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 3/91 (3%)
Query: 175 VFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDK---DGNSRGFAVIEYDHPVEAVQAIS 231
+FVANL A ++ E FK G + + V GN GF V+ V
Sbjct: 279 IFVANLLMDATPEQLNETFKGFGAITKDGIQVRSYRLKGNCFGFVTFASAEAVKLVLQAH 338
Query: 232 MFDKQMLYERRMTVRMDRGVTDKGELRLPEG 262
+ RR+++ RG D G + G
Sbjct: 339 KESAIRIGNRRVSIEEKRGNNDNGRPAMRNG 369
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 30.7 bits (66), Expect = 2.2
Identities = 16/79 (20%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 169 PPLVKKVFVANLDYKADQAKIKEVFKMAGKVRNID-LAVDKDGNSRGFAVIEYDHPVEAV 227
P + +FV + ++K+VF G+V N+ +A ++ S G+ + ++ +A
Sbjct: 73 PSSISSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQ 132
Query: 228 QAISMFDKQMLYERRMTVR 246
A+ + + R + V+
Sbjct: 133 SAVEAMNGKFFDGRFILVK 151
>At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 816
Score = 30.7 bits (66), Expect = 2.2
Identities = 20/96 (20%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
Query: 41 FVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVMH 100
F+SN+ + + +++ F + G + L D+GK RG +F + E + A+ +
Sbjct: 654 FISNLSVKAQEEDIRKFFGDDGGVDSIRILHHKDTGKPRGLAYADFVDDEHLAAAI-AKN 712
Query: 101 RYELNGRKLVLKEETGNERRMHTSRPQHREGRNNRD 136
R G+K+ + + + +R + N++D
Sbjct: 713 RKMFFGKKISIARSNPKKGKKEFTRRGNDGSGNSKD 748
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 30.7 bits (66), Expect = 2.2
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTD-DSGKARGCGIVEFTNTEAMKKALFV 98
+FV ++ +LK +F VG+V V +L + + K++G + F E K+A+
Sbjct: 216 IFVGSLDKGASEEDLKKVFGH-VGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKE 274
Query: 99 MHRYELNGRKLVLKEETGNE 118
+ +NG+K + N+
Sbjct: 275 LKSPMINGKKCGVTASQDND 294
Score = 29.5 bits (63), Expect = 5.0
Identities = 17/73 (23%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 174 KVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVD-KDGNSRGFAVIEYDHPVEAVQAISM 232
++FV +LD A + +K+VF G+V + + + + S+G A + + +A +A+
Sbjct: 215 EIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKE 274
Query: 233 FDKQMLYERRMTV 245
M+ ++ V
Sbjct: 275 LKSPMINGKKCGV 287
>At3g26400.1 68416.m03292 eukaryotic translation initiation factor
4B, putative/ eIF-4B, putative similar to eukaryotic
initiation factor 4B [Arabidopsis thaliana] GI:6739518
Length = 532
Score = 30.3 bits (65), Expect = 2.9
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 131 GRNNRDDKDNWGINKPREPENLNTYGLS 158
G + DD DNWG K + P +T+G S
Sbjct: 216 GLSRADDVDNWGAGKRQAPVRSSTFGSS 243
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 29.9 bits (64), Expect = 3.8
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 99
+FV + ELK +F + G++ +V++ GK CG V++ N + + AL V+
Sbjct: 262 IFVGGLDANVTDDELKSIFGQ-FGELLHVKI---PPGKR--CGFVQYANKASAEHALSVL 315
Query: 100 HRYELNGRKLVL 111
+ +L G+ + L
Sbjct: 316 NGTQLGGQSIRL 327
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 29.9 bits (64), Expect = 3.8
Identities = 14/63 (22%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 169 PPLVKKVFVANLDYKADQAKIKEVFKMAGKVRNID-LAVDKDGNSRGFAVIEYDHPVEAV 227
P + +FV + ++K+VF G+V N+ +A ++ S G+ + ++ +A
Sbjct: 54 PSSISSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQ 113
Query: 228 QAI 230
A+
Sbjct: 114 SAV 116
>At5g16840.1 68418.m01973 RNA recognition motif (RRM)-containing
protein predicted proteins - Arabidopsis thaliana
Length = 259
Score = 29.9 bits (64), Expect = 3.8
Identities = 18/69 (26%), Positives = 32/69 (46%)
Query: 172 VKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEAVQAIS 231
V+ V V NL A + IKE F +G+V +ID+ ++ F + + S
Sbjct: 5 VRSVKVGNLSSGATEHDIKEFFSFSGEVESIDIQSNEHSAYVTFKETQGAETAVLLSGAS 64
Query: 232 MFDKQMLYE 240
+ D+ ++ E
Sbjct: 65 IADQSVIIE 73
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 29.9 bits (64), Expect = 3.8
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 169 PPLVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEAVQ 228
P + V+V N+ + + ++E+F G V + L + KD +S GF V +D A+
Sbjct: 55 PSTCRSVYVGNIHTQVTEPLLQEIFTSTGPVESSKL-IRKDKSSYGF-VHYFDRRSAALA 112
Query: 229 AISM 232
+S+
Sbjct: 113 ILSL 116
>At1g24570.1 68414.m03091 expressed protein contains Pfam profile
PF05212: Protein of unknown function (DUF707)
Length = 363
Score = 29.9 bits (64), Expect = 3.8
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 96 LFVMHRYELNGRKLVLKEETGNERRMHTSRPQHREGRNNRDDKDNWGINKPREP 149
+ ++ +++L + L ETG ++ T R +H E D+K +W N PR P
Sbjct: 191 IHIVKKHDLEISQPGLDPETGFNWQI-TKRREHSEVHKETDEKLDWCSNPPRPP 243
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 29.5 bits (63), Expect = 5.0
Identities = 20/93 (21%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Query: 175 VFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDK-DGNSRGFAVIEYDHPVEAVQAISMF 233
+ + NL A +++ F+ G +++I L + G RGF ++Y + +A +A+
Sbjct: 49 LLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRM 108
Query: 234 DKQMLYERRMT-VRMDRGVTDKGELRLPEGLKG 265
+ +++ R + V + E+R G G
Sbjct: 109 NHKVIGGREIAIVFAEENRKTPQEMRTTNGTSG 141
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 29.5 bits (63), Expect = 5.0
Identities = 14/65 (21%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 166 NVQPPLVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKD-GNSRGFAVIEYDHPV 224
N + K+FV L ++ + ++ F+ G++ + DK+ G S+G+ + +
Sbjct: 15 NTTDTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAE 74
Query: 225 EAVQA 229
A++A
Sbjct: 75 AAMRA 79
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 29.5 bits (63), Expect = 5.0
Identities = 23/110 (20%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 99
+FV + LK++F + G++ +V++ +GK CG V+F+ ++AL ++
Sbjct: 263 VFVGGLDASVTDDHLKNVFSQ-YGEIVHVKI---PAGKR--CGFVQFSEKSCAEEALRML 316
Query: 100 HRYELNGRKLVLKEETGNERRMHTSRPQHREGRNNRDDKDNWGINKPREP 149
+ +L G + L + Q G + ++ +G P++P
Sbjct: 317 NGVQLGGTTVRLSWGRSPSNKQSGDPSQFYYGGYGQ-GQEQYGYTMPQDP 365
>At3g50670.2 68416.m05543 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 204
Score = 29.1 bits (62), Expect = 6.6
Identities = 10/30 (33%), Positives = 21/30 (70%)
Query: 173 KKVFVANLDYKADQAKIKEVFKMAGKVRNI 202
K +FV+ L+Y++ ++KIK F+ G ++ +
Sbjct: 138 KTLFVSRLNYESSESKIKREFESYGPIKRV 167
>At3g20890.1 68416.m02641 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative similar to SP|P52597
Heterogeneous nuclear ribonucleoprotein F (hnRNP F)
{Homo sapiens}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 350
Score = 29.1 bits (62), Expect = 6.6
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 99
L + +P+ ++ D FK+ +V + + G+ G VEF N E + A+ V
Sbjct: 264 LRLRGLPFSAGKEDILDFFKDFELSEDFVHVTVNGEGRPTGEAFVEFRNAEDSRAAM-VK 322
Query: 100 HRYELNGRKLVLKEETGNERRMHTSR 125
R L R + L + E SR
Sbjct: 323 DRKTLGSRYIELFPSSVEELEEALSR 348
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 29.1 bits (62), Expect = 6.6
Identities = 15/63 (23%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 172 VKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEAVQAIS 231
+ +V+V NLD + + ++++ F+ G +R++ +A G+A ++++ +A AI
Sbjct: 1 MSRVYVGNLDPRVTERELEDEFRSFGVIRSVWVA----RRPPGYAFLDFEDSRDARDAIR 56
Query: 232 MFD 234
D
Sbjct: 57 EVD 59
>At1g79000.1 68414.m09212 p300/CBP acetyltransferase-related protein
2 (PCAT2) contains Pfam domains PF02135: TAZ zinc finger
and PF00569: Zinc finger, ZZ type; identical to cDNA
p300/CBP acetyltransferase-related protein 2
GI:12597460
Length = 1691
Score = 29.1 bits (62), Expect = 6.6
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 370 VLTAQANVNQAASLGIGNNEMNS-NVLTSGVMGGNQMNSGPLSNISGTSRPLGVSVPNQG 428
++T+ + A S I + MN+ N+L SG M G +++G + S G ++ +
Sbjct: 151 MITSSGDATMAGSNNITTSAMNTGNLLNSGGMLGGNLSNGYQHSSSNFGLGSGGNMSSMS 210
Query: 429 YGRDTGVQQST 439
R+TG T
Sbjct: 211 SQRNTGQMMPT 221
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 28.7 bits (61), Expect = 8.8
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Query: 40 LFVSNIPYEFRWTELKDLFKE--KVGDVAYVELLTDD-SGKARGCGIVEFTNTEAMKKAL 96
LFV ++ + WT +L E K G V V+ + SGK++G VEF + A
Sbjct: 236 LFVGDLHW---WTTDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEFYDPVAASACK 292
Query: 97 FVMHRYELNGRKLVLK 112
++ Y NGR V++
Sbjct: 293 DALNGYPFNGRPCVVE 308
>At5g24440.1 68418.m02880 RNA-binding protein, putative
Length = 320
Score = 28.7 bits (61), Expect = 8.8
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKAL 96
++ +NI E EL++ FK G+V ++ LL D + R VEF E+ AL
Sbjct: 236 VYCTNIDKEVTKMELENFFKTVCGEVHHLRLLGDFYHQTR-IAFVEFKLAESAISAL 291
>At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesin
like protein A, Arabidopsis thaliana, gb:Q07970
Length = 790
Score = 28.7 bits (61), Expect = 8.8
Identities = 15/51 (29%), Positives = 24/51 (47%)
Query: 42 VSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAM 92
+S+IP++ R E + + +V + D G CG VEFT E +
Sbjct: 21 LSSIPFDKRRKETQGTGRRQVLSTVNRQDANSDVGSTEECGKVEFTKDEVL 71
>At3g54000.3 68416.m05969 expressed protein
Length = 301
Score = 28.7 bits (61), Expect = 8.8
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 224 VEAVQAISMFDKQMLYERRMTVRMDRGVTDKGELRLPEGLKGIGMGLGPNGEPLRDVAR 282
++A+Q + +Q++ RR VR +RGV G + G + N P RDV R
Sbjct: 192 LQAIQFQQLKQQQLMKHRRQLVRQNRGVRVNGNKNV--GPVDLSSSAWSNQFPRRDVMR 248
>At3g54000.2 68416.m05968 expressed protein
Length = 301
Score = 28.7 bits (61), Expect = 8.8
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 224 VEAVQAISMFDKQMLYERRMTVRMDRGVTDKGELRLPEGLKGIGMGLGPNGEPLRDVAR 282
++A+Q + +Q++ RR VR +RGV G + G + N P RDV R
Sbjct: 192 LQAIQFQQLKQQQLMKHRRQLVRQNRGVRVNGNKNV--GPVDLSSSAWSNQFPRRDVMR 248
>At3g54000.1 68416.m05970 expressed protein
Length = 352
Score = 28.7 bits (61), Expect = 8.8
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 224 VEAVQAISMFDKQMLYERRMTVRMDRGVTDKGELRLPEGLKGIGMGLGPNGEPLRDVAR 282
++A+Q + +Q++ RR VR +RGV G + G + N P RDV R
Sbjct: 192 LQAIQFQQLKQQQLMKHRRQLVRQNRGVRVNGNKNV--GPVDLSSSAWSNQFPRRDVMR 248
>At3g22640.1 68416.m02858 cupin family protein contains similarity
to vicilin-like protein precursor [Juglans regia]
GI:6580762, vicilin precursor [Theobroma cacao]
PIR|S22477, vicilin precursor [Macadamia integrifolia]
GI:5852872
Length = 486
Score = 28.7 bits (61), Expect = 8.8
Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Query: 43 SNIPYEFRWTELKDLFKEKVGDVAYVELLTDDS-GKARGCGIVEFTNTEAMKKALFVMHR 101
+N PY FR D F+ K G V + T + RG F+ E FV H
Sbjct: 60 TNHPYHFRKRSFSDWFQSKEGFVRVLPKFTKHAPALFRGIENYRFSLVEMEPTTFFVPHH 119
Query: 102 YELNGRKLVLK 112
+ + +VL+
Sbjct: 120 LDADAVFIVLQ 130
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 28.7 bits (61), Expect = 8.8
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 173 KKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVD-KDGNSRGFAVIEYDHPVEAVQAIS 231
+ +FVAN+ + A + + F G+V + D G G A IE+ A A+S
Sbjct: 516 RTIFVANVHFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEFTRKEAAENALS 575
Query: 232 M 232
+
Sbjct: 576 L 576
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 28.7 bits (61), Expect = 8.8
Identities = 15/61 (24%), Positives = 28/61 (45%)
Query: 75 SGKARGCGIVEFTNTEAMKKALFVMHRYELNGRKLVLKEETGNERRMHTSRPQHREGRNN 134
+GK +G G V F N + AL M+ + R + L++ + ER + + + N
Sbjct: 174 TGKTKGYGFVSFLNPADLAAALKEMNGKYVGNRPIKLRKSSWKERTDQEAAERQKHHSNK 233
Query: 135 R 135
+
Sbjct: 234 K 234
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.315 0.135 0.389
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,935,905
Number of Sequences: 28952
Number of extensions: 365704
Number of successful extensions: 1080
Number of sequences better than 10.0: 176
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 91
Number of HSP's that attempted gapping in prelim test: 800
Number of HSP's gapped (non-prelim): 347
length of query: 470
length of database: 12,070,560
effective HSP length: 84
effective length of query: 386
effective length of database: 9,638,592
effective search space: 3720496512
effective search space used: 3720496512
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 61 (28.7 bits)
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