Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001541-TA|BGIBMGA001541-PA|IPR013026|Tetratricopeptide
region, IPR001440|Tetratricopeptide TPR_1
         (154 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory recept...    23   1.5  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     20   8.3  
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    20   8.3  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    20   8.3  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    20   8.3  

>AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory receptor
           candidate 49 protein.
          Length = 418

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%)

Query: 43  NYILHSNRSFAFLKLDQHYLSLQDANETVRLQPQWAKNPFSMVAFSMALSGLGFVVGKTT 102
           NY++ SN++  +L L++ YL ++ +   + L P   K P  +      L  + F +    
Sbjct: 18  NYLILSNKNNTYLVLNK-YLLVKHSKPKMPLLP---KTPLPLTLLYKLLGIIQFPISAHF 73

Query: 103 TMMS 106
           + MS
Sbjct: 74  SFMS 77


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 10/23 (43%), Positives = 11/23 (47%)

Query: 119 DLGYNDSSQEKEDVIPERKNKYS 141
           D  YN     +ED IP   NK S
Sbjct: 75  DCPYNTQDCYREDCIPGDGNKRS 97


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 6/19 (31%), Positives = 11/19 (57%)

Query: 100 KTTTMMSSWSAGRSLQPPV 118
           KT   +  W+AG ++  P+
Sbjct: 97  KTIISIGGWNAGNAILAPI 115


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 7/17 (41%), Positives = 10/17 (58%)

Query: 20  CVKDGKFIEAVLHYTQA 36
           C KDG  I    H+++A
Sbjct: 621 CPKDGHVILETFHFSEA 637


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 7/17 (41%), Positives = 10/17 (58%)

Query: 20  CVKDGKFIEAVLHYTQA 36
           C KDG  I    H+++A
Sbjct: 621 CPKDGHVILETFHFSEA 637


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.314    0.129    0.370 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,128
Number of Sequences: 317
Number of extensions: 1331
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 154
length of database: 114,650
effective HSP length: 52
effective length of query: 102
effective length of database: 98,166
effective search space: 10012932
effective search space used: 10012932
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.1 bits)
S2: 40 (20.2 bits)