GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001540-TA|BGIBMGA001540-PA|IPR006935|Type III
restriction enzyme, res subunit
         (1032 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       25   2.0  
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    25   3.5  
Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    24   4.6  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 74  SNVTNTIPELQFEEEDEALYSNKELPDHACKYCGI 108
           SNV     E + EE D    +NKE   ++C+YC I
Sbjct: 445 SNVEVVQEEAKKEESDSNNNNNKE-EGNSCQYCNI 478


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)

Query: 438 HLPKHFSAPNLPDLNRSQVYAVKHAL 463
           H P HF+A    DLNR  +  V +AL
Sbjct: 483 HFP-HFTAARFFDLNRKTILGVLNAL 507


>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 9/31 (29%), Positives = 14/31 (45%)

Query: 81  PELQFEEEDEALYSNKELPDHACKYCGIHDP 111
           PE +  E +  + + +      CK CG H P
Sbjct: 14  PECENPETELLVSTKRSTISQGCKACGYHSP 44


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.135    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,171
Number of Sequences: 317
Number of extensions: 9379
Number of successful extensions: 24
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20
Number of HSP's gapped (non-prelim): 4
length of query: 1032
length of database: 114,650
effective HSP length: 64
effective length of query: 968
effective length of database: 94,362
effective search space: 91342416
effective search space used: 91342416
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 48 (23.4 bits)