Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001540-TA|BGIBMGA001540-PA|IPR006935|Type III
restriction enzyme, res subunit
(1032 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 1008 0.0
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 212 2e-55
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 181 5e-46
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 178 4e-45
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 130 7e-31
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr... 116 2e-26
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 36 0.038
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni... 31 1.1
SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces p... 28 5.8
SPAC824.08 |gda1|gdp1|guanosine-diphosphatase Gda1|Schizosacchar... 28 7.7
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 28 7.7
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 28 7.7
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 1008 bits (2495), Expect = 0.0
Identities = 479/839 (57%), Positives = 608/839 (72%), Gaps = 9/839 (1%)
Query: 68 ELSSKISNVTNTIPELQFEEEDEALYSNKELPDHACKYCGIHDPATVVMCNICNKWFCNG 127
++SS +S+ N E E + E L K+ + C YC I +P +++ C CNKWFCN
Sbjct: 10 DISSLVSS-KNMTSENGLEHQFEELLVEKQYSEEHCAYCHIKNPNSILKCLHCNKWFCNV 68
Query: 128 RGNTSGSHIINHLVRAKHKEAALHRDGPLGETLLECYSCGARNVFVLGFIPAKADSVVVL 187
RG + SHII+HLVRA+HK+ ALH L +T+LECY+CG RNVF+LGFIPAKA +VVVL
Sbjct: 69 RGKSGASHIISHLVRARHKQVALHSHSSLSDTVLECYNCGTRNVFLLGFIPAKAKTVVVL 128
Query: 188 LCRQPCAAQSSLKDMNWDQEQWKPLISDRAFLSWLVKVPSETEQMRARQVTPQQIGRLEE 247
LCRQPCA S KDMNWD QW+P+ISDR FL WL+ PSE EQ A +T QQ+ RLEE
Sbjct: 129 LCRQPCARASIAKDMNWDLTQWQPIISDRQFLPWLITPPSEEEQKLAIPITSQQMVRLEE 188
Query: 248 LWRDNVDATFQDLEKPGVDEEPHQVLLRYEDGYQYQNIFGPLVKLEADYDKRLKESQTQE 307
LWR + +A +DL+KP D+ V LRY+D + YQ + PL++ EADYDKRLKESQTQ+
Sbjct: 189 LWRKDPNANLEDLDKPIEDDSLPSVELRYKDAHAYQAVLSPLIQAEADYDKRLKESQTQK 248
Query: 308 GIEVRWDVGLNKKTIAYFTLAKTDS-DMKLMHGDELRLRYVGEMHKAWSGVGHVIKVPDN 366
+ VRWD +NK+ A+F L K +S +++L GDE++L Y GE+ WS G+VIK+P+N
Sbjct: 249 DVVVRWDQAINKRYTAWFLLPKLESGEIRLAIGDEMKLTYEGELRAPWSSTGYVIKIPNN 308
Query: 367 YGDDVGLELKSGAGAPLDCTSNFVVDFIWKSTSFDRMQLALRKFALDDSSVSGYIYRRLL 426
D+VGLELK P++CT NF VD++WKSTSFDRMQ ALR FA D S +S ++Y +LL
Sbjct: 309 VSDEVGLELKRSDKVPIECTHNFSVDYVWKSTSFDRMQTALRLFATDGSRLSSFLYHKLL 368
Query: 427 GHEVEEVLFRVHLPKHFSAPNLPDLNRSQVYAVKHALQRPLSLIQGPPGTGKTVTSATIV 486
GH++ + LP S PNLP LN SQ AV+ L +PLSLIQGPPGTGKTVTSA++V
Sbjct: 369 GHDIPPSFLKPKLPSDLSVPNLPKLNASQSEAVRAVLSKPLSLIQGPPGTGKTVTSASVV 428
Query: 487 YQLV------RQNGGPVLVCAPSNTAVDQLTEKIHRTGLKVVRLCAKSREAMESSVSFLA 540
Y L R++ PVLVCAPSN AVDQL EKIHRTGL+VVR+ AKSRE +ESSVSFL+
Sbjct: 429 YHLATMQSRKRKSHSPVLVCAPSNVAVDQLAEKIHRTGLRVVRVAAKSREDIESSVSFLS 488
Query: 541 LHEQARALGSADSELRKLTRLKEEAGELSXXXXXXXXXXXXXXXXXXXXXXXVICTTCVG 600
LHEQ + + EL++L +L+ E ELS VIC TCVG
Sbjct: 489 LHEQIKNY-KFNPELQRLLKLRSENNELSIQDEKKLRILVAAAEKELLRAAHVICCTCVG 547
Query: 601 AGDPRVARMRFQSILIDEGMQSTEPECMVPVVLGARQLILVGDHCQLGPVVMCKKAAKAG 660
AGD R+++ +F+S+LIDE Q++EPECM+P+VLGA+Q++LVGDH QLGPVVM KK A A
Sbjct: 548 AGDRRISKYKFRSVLIDEATQASEPECMIPLVLGAKQVVLVGDHQQLGPVVMNKKVALAS 607
Query: 661 LSQSLFERLVVLGIRPFRLEVQYRMHPELSRFPSDFFYEGSLQNGVSAEERRLHKIDFPW 720
LSQSLFERL++LG PFRL VQYRMHP LS FPS+ FYEG+LQNGV+ ER +DFPW
Sbjct: 608 LSQSLFERLIILGNSPFRLVVQYRMHPCLSEFPSNTFYEGTLQNGVTTSERIARHVDFPW 667
Query: 721 PRPDRPMFFYVTQGQEEIAGSGTSYLNRTEAANVEKLTTRFLKAGVRPEQIGIITPYEGQ 780
+PD P+ FY GQEE++ SGTS+LNRTEA+ EK+ T FL++ V PEQIGI+TPY+GQ
Sbjct: 668 IQPDSPLMFYANFGQEELSASGTSFLNRTEASTCEKIVTTFLRSNVLPEQIGIVTPYDGQ 727
Query: 781 RSYLVQHMQYQGSLHAKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLSDPRRL 840
RSY+VQ+MQ GS+ LY+ +EVASVDAFQGREKD II+SCVRS+EHQGIGF++DPRRL
Sbjct: 728 RSYIVQYMQNNGSMQKDLYKAVEVASVDAFQGREKDFIILSCVRSSEHQGIGFVNDPRRL 787
Query: 841 NVALTRAKYGLIVVGNPKVLSKQPLWNHLLAFYKERRVLTEGPLSNLKESAIQFAKPKK 899
NVALTRAKYG+IV+GNPKVL+K LW H + KE+ L EG L++L++ ++ P+K
Sbjct: 788 NVALTRAKYGVIVLGNPKVLAKHALWYHFVLHCKEKGYLVEGTLNSLQKFSLTLTPPQK 846
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 212 bits (517), Expect = 2e-55
Identities = 171/539 (31%), Positives = 266/539 (49%), Gaps = 45/539 (8%)
Query: 371 VGLELKSGAGAPLDCTSNFVVDFIWKSTSFDRMQLALRKFALDDSSVSGYIYRRLLGHEV 430
+ + LKS P T VV + + T ++RM+ + +F ++ L+G +
Sbjct: 132 ISVALKSEEDIPSSVTRLSVVKLVNRVT-YERMRHTMLEFKRSIPEYRNSLFYTLIGRKK 190
Query: 431 EEVLFRVHLPKHFSAPNLPDLNRSQVYAVKHALQ-RPLSLIQGPPGTGKTVTSATIVYQL 489
+V L N +LN SQ AVK ++ + LSLI GPPGTGKT T I+ QL
Sbjct: 191 ADVSIDQKLIGDIKYFN-KELNASQKKAVKFSIAVKELSLIHGPPGTGKTHTLVEIIQQL 249
Query: 490 VRQNGGPVLVCAPSNTAVDQLTEKIHRTGLKVVRLCAKSR---EAMESSVSFLALH---- 542
V +N +LVC SN AVD + +++ +G+ +VRL +R ++ S+ L+
Sbjct: 250 VLRNKR-ILVCGASNLAVDNIVDRLSSSGIPMVRLGHPARLLPSILDHSLDVLSRTGDNG 308
Query: 543 EQARALGS-ADSELRKLTRLKE--EAGELSXXXXXXXXXXXXXXXXXXX---XXXXVICT 596
+ R + D L K+T+ K E E+ V+
Sbjct: 309 DVIRGISEDIDVCLSKITKTKNGRERREIYKNIRELRKDYRKYEAKTVANIVSASKVVFC 368
Query: 597 TCVGAGDPRVARMRFQSILIDEGMQSTEPECMVPVVLGARQLILVGDHCQLGPVVMCKKA 656
T GAG ++ RF +++IDE Q+ EP+C +P+ LG ++IL GDH QL P V K+
Sbjct: 369 TLHGAGSRQLKGQRFDAVIIDEASQALEPQCWIPL-LGMNKVILAGDHMQLSPNVQSKRP 427
Query: 657 AKAGLSQSLFERLVVLG---IRPFRLEVQYRMHPELSRFPSDFFYEGSLQNGVSAEERRL 713
S+FERLV ++ F L +QYRMH +S+FPSD FY+ L ++R L
Sbjct: 428 YI-----SMFERLVKSQGDLVKCF-LNIQYRMHELISKFPSDTFYDSKLVPAEEVKKRLL 481
Query: 714 HKIDF--PWPRPDRPMFFYVTQG--QEEIAGSGT------SYLNRTEAANVEKLTTRFLK 763
++ D P++FY T G QE+ S N EA V + L+
Sbjct: 482 MDLENVEETELTDSPIYFYDTLGNYQEDDRSEDMQNFYQDSKSNHWEAQIVSYHISGLLE 541
Query: 764 AGVRPEQIGIITPYEGQRSYLVQHMQYQGSLHAKLYQEIEVASVDAFQGREKDIIIMSCV 823
AG+ + I ++TPY Q + + Q ++ +G E+E+ SVD QGREK+ II S V
Sbjct: 542 AGLEAKDIAVVTPYNAQVALIRQLLKEKGI-------EVEMGSVDKVQGREKEAIIFSLV 594
Query: 824 RSNEHQGIGFLSDPRRLNVALTRAKYGLIVVGNPKVLS-KQPLWNHLLAFYKERRVLTE 881
RSN+ + +GFL++ RRLNVA+TR K L V+G+ + ++ + F +E ++ +
Sbjct: 595 RSNDVREVGFLAEKRRLNVAITRPKRHLCVIGDSNTVKWASEFFHQWVDFLEENAIVMD 653
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 181 bits (440), Expect = 5e-46
Identities = 115/308 (37%), Positives = 172/308 (55%), Gaps = 19/308 (6%)
Query: 593 VICTTCVGAGDPRV--ARMRFQSILIDEGMQSTEPECMVPVVLGARQLILVGDHCQLGPV 650
++C T +G + A + F++++IDE Q+ E ++P+ G ++VGD QL P
Sbjct: 1490 IVCATLSASGHELLLNAGLTFRTVIIDEAAQAVELSSIIPLKYGCESCVMVGDPNQLPPT 1549
Query: 651 VMCKKAAKAGLSQSLFERLVVL-GIRPFRLEVQYRMHPELSRFPSDFFYEGSLQNG--VS 707
V+ K +AK G SQSL+ R+ L +QYRM+PE+SRFPS FFY L +G +S
Sbjct: 1550 VLSKTSAKFGYSQSLYVRMFKQHNESACLLSIQYRMNPEISRFPSKFFYNSKLLDGPNMS 1609
Query: 708 AEERRLHKIDFPWPR-PDRPMF-FYVTQGQEEIAGSGTSYLNRTEAANVEKLTTRFLKAG 765
A R PW P ++ F+ G E + S + Y N EA+ + L R ++
Sbjct: 1610 AVTSR------PWHEDPQLGIYRFFNVHGTEAFSNSKSLY-NVEEASFILLLYERLIQCY 1662
Query: 766 VRPE---QIGIITPYEGQRSYLVQHMQYQGSLHAKLYQEIEVASVDAFQGREKDIIIMSC 822
+ + +IG++TPY Q L Q+Q + +++ +++ +VD FQG+EKDIII SC
Sbjct: 1663 LNIDFEGKIGVVTPYRSQVQQL--RSQFQRKYGSIIFKHLDIHTVDGFQGQEKDIIIFSC 1720
Query: 823 VRSNEHQGIGFLSDPRRLNVALTRAKYGLIVVGNPKVLSKQPLWNHLLAFYKERRVLTEG 882
VRS+ GIGFL D RRLNVALTRAK L +VGN K L ++ ++ L+ K R V +
Sbjct: 1721 VRSSMSGGIGFLQDLRRLNVALTRAKSSLYIVGNSKPLMQEDIFYSLIEDAKTRGVWRDL 1780
Query: 883 PLSNLKES 890
+ K S
Sbjct: 1781 SANQFKNS 1788
Score = 40.3 bits (90), Expect = 0.001
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 17/81 (20%)
Query: 451 LNRSQVYAV-KHALQRPLSLIQGPPGTGKT----------VTSAT------IVYQLVRQN 493
+N Q YA+ ++ +LIQGPPGTGKT +TS++ + Q + +
Sbjct: 1271 VNEPQAYAIYASSVNDGFTLIQGPPGTGKTKTILGMIGAVLTSSSQGLQFNVPGQTRKTS 1330
Query: 494 GGPVLVCAPSNTAVDQLTEKI 514
+L+CAPSN A+D++ +I
Sbjct: 1331 KNKILICAPSNAAIDEILLRI 1351
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 178 bits (433), Expect = 4e-45
Identities = 112/297 (37%), Positives = 165/297 (55%), Gaps = 12/297 (4%)
Query: 593 VICTTCVGAGDPRVAR--MRFQSILIDEGMQSTEPECMVPVVLGARQLILVGDHCQLGPV 650
V+C T G+G VA + F +++IDE Q+ E + ++P+ GA++ ILVGD QL P
Sbjct: 1352 VVCATLSGSGHDLVAHSSLNFSTVIIDEAAQAVELDTIIPLRYGAKKCILVGDPNQLPPT 1411
Query: 651 VMCKKAAKAGLSQSLFERLVV-LGIRPFRLEVQYRMHPELSRFPSDFFYEGSLQNGVSAE 709
V+ KKAA SQSLF R+ + L +QYRMHP++S FPS FY+ L++G +
Sbjct: 1412 VLSKKAASLNYSQSLFVRIQKNFSNQMCLLSIQYRMHPDISHFPSKKFYDSRLEDGDNMA 1471
Query: 710 ERRLHKIDFPWPRPDRPMFFYVTQGQEEIAGSGTSY-LNRTE--AANVEKLTTRFLKAGV 766
E+ ++ P+ + F V +G+E + + ++Y L E V++L +F
Sbjct: 1472 EKT-QQVWHVNPKFTQYRLFDV-RGKERTSNTMSTYNLEEVEYLVNMVDELLNKFPDVNF 1529
Query: 767 RPEQIGIITPYEGQRSYLVQHMQYQGSLHAKLYQEIEVASVDAFQGREKDIIIMSCVRSN 826
+IG+ITPY Q L ++ I++ +VD FQG+EKDII SCV+S
Sbjct: 1530 TG-RIGVITPYRSQLHEL--RRAFKVKYGKSFMSTIDIQTVDGFQGQEKDIIFFSCVKSY 1586
Query: 827 EHQGIGFLSDPRRLNVALTRAKYGLIVVGNPKVLSKQPLWNHLLAFYKERRVLTEGP 883
GIGFL D RRLNVALTRA+ L+++GN + L LW L+ R+ L E P
Sbjct: 1587 SKHGIGFLRDFRRLNVALTRARSSLLIIGNMETLKTDDLWGSLVDDALSRK-LVESP 1642
Score = 42.7 bits (96), Expect = 3e-04
Identities = 33/84 (39%), Positives = 44/84 (52%), Gaps = 18/84 (21%)
Query: 451 LNRSQVYAVKHALQRP-LSLIQGPPGTGKTVT-----SATIV----YQLVRQNGGP---- 496
+N Q A+ AL +LIQGPPGTGKT T SA +V Y + R N
Sbjct: 1130 VNEPQAKAIMCALDNNGFTLIQGPPGTGKTKTIIGIISALLVDLSRYHITRPNQQSKSTE 1189
Query: 497 ----VLVCAPSNTAVDQLTEKIHR 516
+L+CAPSN AVD++ ++ R
Sbjct: 1190 SKQQILLCAPSNAAVDEVLLRLKR 1213
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 130 bits (315), Expect = 7e-31
Identities = 101/306 (33%), Positives = 157/306 (51%), Gaps = 30/306 (9%)
Query: 593 VICTTCVGAGDPRVARMRFQSILIDEGMQSTEPECMVPVVLGARQLILVGDHCQLGPVVM 652
++ + +G + +F +IDE Q P C+ P+ L A + +LVGDH QL P+V
Sbjct: 1042 IVACSSLGVYHSIFNKRKFDYCIIDEASQIPLPICLGPLQL-AEKFVLVGDHYQLPPLVK 1100
Query: 653 CKKAAKAGLSQSLFERLVVLGIRPFR-LEVQYRMHPELSRFPSDFFYEGSLQNG---VSA 708
+ +K GLS SLF+ L L +QYRM+ +++ S+ Y G+L G +S
Sbjct: 1101 NSRTSKDGLSLSLFKLLSEKHPEAVTTLRLQYRMNEDINSLSSELIYGGNLVCGSKTISQ 1160
Query: 709 EERRLHKIDFPWPRPD------------RPMFFYVTQGQEEIAG--SGTSYL--NRTEAA 752
++ L K PD P + ++I G S T+ + N TEA
Sbjct: 1161 KKLILPKAHLSDGLPDSSSSLHWVNKLINPSHSVIFFNTDDILGVESKTNNILENHTEAF 1220
Query: 753 NVEKLTTRFLKAGVRPEQIGIITPYEGQRSYLVQHMQYQGSLHAKLYQEIEVASVDAFQG 812
+E+ + FL+ GV+ IGII+ Y+ Q L +++ K + EIE+ +VD +QG
Sbjct: 1221 LIEQAVSSFLERGVKQSSIGIISIYKSQVELLSKNL--------KSFTEIEINTVDRYQG 1272
Query: 813 REKDIIIMSCVRSNEHQGIG-FLSDPRRLNVALTRAKYGLIVVGNPKVLSKQPLWNHLLA 871
R+KDII++S VRSN +G L D RLNVAL+RAK I+ G+ LS + +HLL
Sbjct: 1273 RDKDIILISFVRSNSKNLVGELLRDWHRLNVALSRAKVKCIMFGSLSTLSSSNIVSHLLK 1332
Query: 872 FYKERR 877
++ +
Sbjct: 1333 LLEKNK 1338
Score = 41.5 bits (93), Expect = 6e-04
Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Query: 451 LNRSQVYAVK--HALQRPLSLIQGPPGTGKTVTSATIVYQLVRQNGGPVLVCAPSNTAVD 508
LN Q+ A+K HA + SLI G PGTGKT T ++++ L+ + +L+ + ++ AVD
Sbjct: 933 LNEDQITALKKCHAAEH-YSLILGMPGTGKTTTISSLIRSLLAKK-KKILLTSFTHLAVD 990
Query: 509 QLTEKIHRTGLKVVRL 524
+ K+ +VRL
Sbjct: 991 NILIKLKGCDSTIVRL 1006
>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
heterochromatin assembly Hrr1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1015
Score = 116 bits (279), Expect = 2e-26
Identities = 87/282 (30%), Positives = 140/282 (49%), Gaps = 22/282 (7%)
Query: 593 VICTTCVGAGDPR--VARMRFQSILIDEGMQSTEPECMVPVVLGARQLILVGDHCQLGP- 649
VI T G R + R+ + I+E E + V QL+L+GDH QL P
Sbjct: 685 VIGMTTTGLNKYRDILERINPKICFIEEAADVLEGPIIPAVFPSLEQLVLIGDHKQLRPG 744
Query: 650 -VVMCKKAAKAGLSQSLFERLVVLGIRPFRLEVQYRMHPELSRFPSDFFYEGSLQNGVSA 708
+ LS S+FERLV + RL +Q RMHP++ R S +
Sbjct: 745 CSTYALRQDPFNLSISMFERLVENDMEYTRLTMQRRMHPQIRRLVSSVY----------- 793
Query: 709 EERRLHKIDFPWPR-PDRPMF--FYVTQGQEEIAGSGTSYLNRTEAANVEKLTTRFLKAG 765
E+ ++I WP P F++T + E S +N EA + + + G
Sbjct: 794 EDLSDYEITKYWPSIPGMGEIRRFFLTHSRIEDNDGFASKINLFEAQMLVQFAVYLINNG 853
Query: 766 VRPEQIGIITPYEGQRSYLVQHMQYQGSLHAKLYQEIEVASVDAFQGREKDIIIMSCVRS 825
V P++I +T Y Q+ L++ + + K + I+VA+VD +QG E D++++S VR+
Sbjct: 854 VEPQKITCLTFYAAQKD-LIERLLSESLNREKHF--IKVATVDGYQGEENDVVLLSLVRN 910
Query: 826 NEHQGIGFLSDPRRLNVALTRAKYGLIVVGNPKVLSK-QPLW 866
N+ +GFLS P R+ V+L+RA+ GL + GN +++++ PLW
Sbjct: 911 NDRTEVGFLSSPHRVCVSLSRARRGLFIFGNAQLVAESNPLW 952
Score = 56.4 bits (130), Expect = 2e-08
Identities = 34/110 (30%), Positives = 61/110 (55%), Gaps = 4/110 (3%)
Query: 451 LNRSQVYAVKHALQRPLSLIQGPPGTGKTVTSATIVYQLVRQNGG---PVLVCAPSNTAV 507
L+ SQ+ A + L + LS+IQGPPGTGK+ + + L+ P+LV +N AV
Sbjct: 372 LDSSQLKAYQSMLTKRLSIIQGPPGTGKSFVTLKAIETLLENTHSHVLPILVACQTNHAV 431
Query: 508 DQLTEKIHRTGLKVVRLCAKSREAMESSVS-FLALHEQARALGSADSELR 556
DQ+ ++ G V+RL +++++ ++V+ F + +A +E+R
Sbjct: 432 DQILIRLLHQGASVMRLGSRTKDPEIAAVTIFQKAKHTKHSFKAAYNEIR 481
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 35.5 bits (78), Expect = 0.038
Identities = 57/250 (22%), Positives = 101/250 (40%), Gaps = 13/250 (5%)
Query: 664 SLFERLVVLGIRPFRLEVQYRMHPELSRFPSDFFYEGSLQNGVSAEERRLHKIDFPWPRP 723
SLF+RL L R L QY + +S S Y ++ S+ +RL + +
Sbjct: 1027 SLFKRLRYLKSRIIDLNTQYNVRESISSLCSS-IYPLDIKTVDSSPNKRLDYGNSGFAHE 1085
Query: 724 DRPMFFYVTQGQEEIAGSGTSYLNRTEAANVEKLTTRFLKAGVRPEQIGIITPYEGQRSY 783
+ + +G +E N EA L G +I I T YE Q S
Sbjct: 1086 VQFINVGAFKGSQETEPVSGYKQNLGEAEYAVALFQYMRMLGYPTNEIVICTLYESQVSL 1145
Query: 784 LVQHMQYQGSLHAKLYQEIEVASVDAFQGREK-DIIIMSCVRSNEHQGIGFLSDPRRLNV 842
L + + + S ++ Q V +V+ ++ + +I + V S E +P+
Sbjct: 1146 LNEIISVRCSHNSFFGQPAFVGTVEKLPSDKRVNFVIFTTVESKEASDHW---NPKTFYK 1202
Query: 843 ALTRAKYGLIVVGNPKVLSK----QPLWNHLLAFYKERRVLTEG---PLSNLKESAIQFA 895
A + YGL V+ N + + LWN + ++ +LT G P S+ S+++
Sbjct: 1203 AFSACSYGLYVLCNRDLFRSTRGLEKLWNE-IEKTPDKLLLTTGEIYPSSHKIGSSVETF 1261
Query: 896 KPKKLVNSQN 905
+ + L++ N
Sbjct: 1262 EIENLLHLSN 1271
>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
Rad15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 772
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 439 LPKHFSAPNLPDLNRSQVYAVKHALQRP-LSLIQGPPGTGKTVT--SATIVYQLVRQNGG 495
LP F P + + +KH+L ++L++ P GTGKT++ S + YQ
Sbjct: 8 LPILFPYPRIYPEQYQYMCDLKHSLDAGGIALLEMPSGTGKTISLLSLIVSYQQHYPEHR 67
Query: 496 PVLVCAPSNTAVDQLTEKIHR 516
++ C+ + + +D+ ++ R
Sbjct: 68 KLIYCSRTMSEIDKALAELKR 88
>SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 394
Score = 28.3 bits (60), Expect = 5.8
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 402 RMQLALRKFA--LDDSSVSGYIYRRLLGHEVEEVLFRVHLPKHFSAPNLPDLNRSQVYAV 459
RM +L ++A S G+I+ + L VE +L R LP FS+ + +S+V
Sbjct: 279 RMLSSLLRYASIAFSESFQGWIHLKCLCVYVESIL-RYGLPPDFSSVIFQPMAKSEVKIK 337
Query: 460 KHALQRPLSLIQGPPGTGK 478
L + L Q P G K
Sbjct: 338 NILLSKYAYLAQNPVGNNK 356
>SPAC824.08 |gda1|gdp1|guanosine-diphosphatase
Gda1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 556
Score = 27.9 bits (59), Expect = 7.7
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 89 DEALYSNKELPDHACKYCGIHDP 111
++ALY +K P C + G+H P
Sbjct: 406 EKALYKDKNCPVRPCSFNGVHQP 428
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 27.9 bits (59), Expect = 7.7
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 17 ETEEGDFIGADTQGSEFEFTDFTLPSQSQTQASQHDHGLSSSNQVNGIGRIELSSKISNV 76
ETE+ DT+ F T+ P+ SQ+Q + L+S+++V+ + LS++ S+
Sbjct: 87 ETEDLPSFNGDTEEKPFIKTEEGAPASSQSQVVVSSN-LTSNSEVSKLEEERLSTR-SHS 144
Query: 77 TNTIPELQF-EEEDEALYSNKEL 98
P + F +E+ A N EL
Sbjct: 145 QEIKPIVDFGPDEETAKELNTEL 167
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 27.9 bits (59), Expect = 7.7
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 469 LIQGPPGTGKTVTSATIVYQL 489
L+ GPPGTGKT+ + + +L
Sbjct: 692 LLYGPPGTGKTLLAKAVATEL 712
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.319 0.135 0.402
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,431,762
Number of Sequences: 5004
Number of extensions: 183621
Number of successful extensions: 526
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 484
Number of HSP's gapped (non-prelim): 25
length of query: 1032
length of database: 2,362,478
effective HSP length: 80
effective length of query: 952
effective length of database: 1,962,158
effective search space: 1867974416
effective search space used: 1867974416
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)
- SilkBase 1999-2023 -