Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001540-TA|BGIBMGA001540-PA|IPR006935|Type III
restriction enzyme, res subunit
(1032 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC025721-8|AAK29903.2| 1069|Caenorhabditis elegans Suppressor wi... 978 0.0
AF074017-1|AAC26789.1| 1069|Caenorhabditis elegans nonsense-medi... 977 0.0
AF003740-7|AAC48142.2| 625|Caenorhabditis elegans Hypothetical ... 143 5e-34
Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical pr... 102 1e-21
AL132853-9|CAB60444.4| 1467|Caenorhabditis elegans Hypothetical ... 100 6e-21
Z48178-3|CAC42246.1| 1553|Caenorhabditis elegans Hypothetical pr... 99 2e-20
Z48178-2|CAA88201.1| 1551|Caenorhabditis elegans Hypothetical pr... 99 2e-20
Z75529-3|CAA99786.2| 1099|Caenorhabditis elegans Hypothetical pr... 87 6e-17
Z50070-2|CAB54253.1| 1069|Caenorhabditis elegans Hypothetical pr... 76 1e-13
Z50070-1|CAA90399.1| 1105|Caenorhabditis elegans Hypothetical pr... 76 1e-13
Z46828-1|CAA86856.1| 542|Caenorhabditis elegans Hypothetical pr... 60 1e-08
U55857-5|AAA98031.1| 602|Caenorhabditis elegans Hypothetical pr... 57 7e-08
AC006642-8|AAF39827.2| 365|Caenorhabditis elegans Laterally sym... 33 1.0
U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein ... 33 1.4
AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein. 33 1.4
Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical pr... 32 1.8
Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical pr... 32 1.8
AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein. 32 1.8
Z68751-8|CAA92978.1| 1474|Caenorhabditis elegans Hypothetical pr... 31 3.2
Z68341-5|CAA92768.1| 1474|Caenorhabditis elegans Hypothetical pr... 31 3.2
U80437-18|AAB37629.1| 518|Caenorhabditis elegans Cell division ... 31 3.2
AF230280-1|AAG16655.1| 1474|Caenorhabditis elegans SWI2/SNF2-lik... 31 3.2
AF038618-3|AAB92073.1| 572|Caenorhabditis elegans Hypothetical ... 31 5.6
AC006642-9|AAX88828.1| 339|Caenorhabditis elegans Laterally sym... 31 5.6
AC006816-2|AAK85508.1| 352|Caenorhabditis elegans Hypothetical ... 30 7.4
AC006816-1|AAN39661.1| 401|Caenorhabditis elegans Hypothetical ... 30 7.4
AB071420-1|BAB86940.1| 401|Caenorhabditis elegans 2-amino-3-car... 30 7.4
Z70750-2|CAA94737.1| 756|Caenorhabditis elegans Hypothetical pr... 30 9.7
>AC025721-8|AAK29903.2| 1069|Caenorhabditis elegans Suppressor with
morphological effecton genitalia protein 2 protein.
Length = 1069
Score = 978 bits (2421), Expect = 0.0
Identities = 463/898 (51%), Positives = 630/898 (70%), Gaps = 18/898 (2%)
Query: 11 QSLTFLETEEGDFIGADTQGSEFEFTDFTLPSQSQTQASQHDHGLSSSNQVNGIGRIELS 70
++LTF++ E+ +TQ S+F + F++P+QS +QA+ G + N + ++
Sbjct: 14 ETLTFVDPEDDGVSIGNTQDSQFAYEQFSVPTQS-SQATDLLPG-GTDGTTNDLPFHDVE 71
Query: 71 SKISNVTNTIPELQFEEEDEALYSNKELPDHACKYCGIHDPATVVMCNICNKWFCNGRGN 130
S+ ++ E Q +++ LP+HAC+YCGI DP V C +C KWFCN
Sbjct: 72 DDESDSEKSLTEEQQQQK---------LPEHACRYCGISDPLCVAKCTVCRKWFCNSNDG 122
Query: 131 TSGSHIINHLVRAKHKEAALHRDGPLGETLLECYSCGARNVFVLGFIPAKADSVVVLLCR 190
TSG HI++H+VR++HKEA H+D P G+T LECY CG++NVF LGFIP K D VVV++CR
Sbjct: 123 TSGGHIVHHMVRSQHKEAYTHKDSPCGDTQLECYRCGSKNVFNLGFIPGKKDQVVVIICR 182
Query: 191 QPCAAQSSLKDMNWDQEQWKPLISDRAFLSWLVKVPSETEQMRARQVTPQQIGRLEELWR 250
PCA+ + D NW E WK +I+++ LSW+V VPSE + RAR++T Q R+EELWR
Sbjct: 183 TPCASIAFQNDDNWSPEDWKSVIAEKQLLSWIVNVPSEEQVARARKITATQAVRMEELWR 242
Query: 251 DNVDATFQDLEKPGVDEEPHQVLLRYEDGYQYQNIFGPLVKLEADYDKRLKESQTQEGIE 310
D+ +AT DL KPG+D EP V LRY D + Y +F PLV +EA+YD+R+KES +Q
Sbjct: 243 DHPEATVDDLNKPGLDREPDHVQLRYVDAHHYSKVFRPLVAIEAEYDRRVKESASQAVGT 302
Query: 311 VRWDVGLNKKTIAYFTLAK-TDSDMKLMHGDELRLRYVGEMHKA-WSGVGHVIKVPDNYG 368
VRW+ GL + +A+F L + D MKL GDELRL++ + + W+ +G V K+PDN+G
Sbjct: 303 VRWEQGLRQSVLAFFHLPQFADGVMKLAKGDELRLKHSQTVDGSEWTKIGSVFKIPDNHG 362
Query: 369 DDVGLELKSGAG-APLDCTSNFVVDFIWKSTSFDRMQLALRKFALDDSSVSGYIYRRLLG 427
D+VG+E++ + ++ F VD +W +T+F+R AL D ++S Y+Y++LLG
Sbjct: 363 DEVGIEIRGAVDKSVMESRIMFTVDVVWNATTFERQYKALAALLNDSKAISPYLYQKLLG 422
Query: 428 HEVEEVLFRVHLPKHFSAPNLPDLNRSQVYAVKHALQRPLSLIQGPPGTGKTVTSATIVY 487
H EE++ + LP+ S LP+LN SQ+ AVK L RPLSLIQGPPGTGKTV SATIVY
Sbjct: 423 HPAEEMMLKFDLPRRLSVAGLPELNSSQMQAVKQVLTRPLSLIQGPPGTGKTVVSATIVY 482
Query: 488 QLVRQNGGPVLVCAPSNTAVDQLTEKIHRTGLKVVRLCAKSREAMESSVSFLALHEQARA 547
LV++ G VLVC+PSN AVD L EKIH+TGLKVVRLCA+SRE E++V +L L Q +
Sbjct: 483 HLVQKTEGNVLVCSPSNIAVDHLAEKIHKTGLKVVRLCARSREHSETTVPYLTLQHQLKV 542
Query: 548 LGSADSELRKLTRLKEEAGELSXXXXXXXXXXXXXXXXXXXXXXXVICTTCVGAGDPRVA 607
+G A EL+KL +LK+EAGEL VIC TC A D R++
Sbjct: 543 MGGA--ELQKLIQLKDEAGELEFKDDLRYMQLKRVKEHELLAAADVICCTCSSAADARLS 600
Query: 608 RMRFQSILIDEGMQSTEPECMVPVVLGARQLILVGDHCQLGPVVMCKKAAKAGLSQSLFE 667
++R +++LIDE Q+TEPE +V ++ G RQL+LVGDHCQLGPVV+CKKAA AGLSQSLFE
Sbjct: 601 KIRTRTVLIDESTQATEPEILVSIMRGVRQLVLVGDHCQLGPVVICKKAAIAGLSQSLFE 660
Query: 668 RLVVLGIRPFRLEVQYRMHPELSRFPSDFFYEGSLQNGVSAEERRLHKIDFPWPRPDRPM 727
RLV+LGIRPFRL+VQYRMHP LS FPS+ FY+GSLQNGV+ +R + +D+ WP+P++P
Sbjct: 661 RLVLLGIRPFRLQVQYRMHPVLSEFPSNVFYDGSLQNGVTENDRHMTGVDWHWPKPNKPA 720
Query: 728 FFYVTQGQEEIAGSGTSYLNRTEAANVEKLTTRFLKAGVRPEQIGIITPYEGQRSYLVQH 787
FF+ G EE++ SGTS+LNRTEAANVEKL ++ +KAGV+P QIG+ITPYEGQRS++V +
Sbjct: 721 FFWHCSGSEELSASGTSFLNRTEAANVEKLVSKLIKAGVQPHQIGVITPYEGQRSFIVNY 780
Query: 788 MQYQGSLHAKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLSDPRRLNVALTRA 847
M QG+L++KLY+ +E+ASVDAFQGREKD II++CVRSN+ GIGFLSDPRRLNVA+TRA
Sbjct: 781 MHTQGTLNSKLYENVEIASVDAFQGREKDYIIVTCVRSNDILGIGFLSDPRRLNVAITRA 840
Query: 848 KYGLIVVGNPKVLSKQPLWNHLLAFYKERRVLTEGPLSNLKESAIQFAKPKKLVNSQN 905
KYGL++VGN KVL++ LW+ L+ YK + +L EGP++ LK + A PK + ++N
Sbjct: 841 KYGLVLVGNAKVLARHDLWHELINHYKSKEMLYEGPINALK--PLNLALPKATIRTKN 896
>AF074017-1|AAC26789.1| 1069|Caenorhabditis elegans
nonsense-mediated mRNA decay trans-acting factor
protein.
Length = 1069
Score = 977 bits (2418), Expect = 0.0
Identities = 463/898 (51%), Positives = 629/898 (70%), Gaps = 18/898 (2%)
Query: 11 QSLTFLETEEGDFIGADTQGSEFEFTDFTLPSQSQTQASQHDHGLSSSNQVNGIGRIELS 70
++LTF++ E+ +TQ S+F + F++P+QS +QA+ G + N + ++
Sbjct: 14 ETLTFVDPEDDGVSIGNTQDSQFAYEQFSVPTQS-SQATDLLPG-GTDGTTNDLPFHDVE 71
Query: 71 SKISNVTNTIPELQFEEEDEALYSNKELPDHACKYCGIHDPATVVMCNICNKWFCNGRGN 130
S+ ++ E Q E++ LP+HAC+YCGI DP V C +C KWFCN
Sbjct: 72 DDESDSEKSLTEEQHEQK---------LPEHACRYCGISDPLCVAKCTVCRKWFCNSNDG 122
Query: 131 TSGSHIINHLVRAKHKEAALHRDGPLGETLLECYSCGARNVFVLGFIPAKADSVVVLLCR 190
TSG HI++H+VR++HKEA H+D P G+T LECY CG++NVF LGFIP K D VVV++CR
Sbjct: 123 TSGGHIVHHMVRSQHKEAYTHKDSPCGDTQLECYRCGSKNVFNLGFIPGKKDQVVVIICR 182
Query: 191 QPCAAQSSLKDMNWDQEQWKPLISDRAFLSWLVKVPSETEQMRARQVTPQQIGRLEELWR 250
PCA+ + D NW E WK +I+++ LSW+V VPSE + RAR++T Q R+EELWR
Sbjct: 183 TPCASIAFQNDDNWSPEDWKSVIAEKQLLSWIVNVPSEEQVARARKITATQAVRMEELWR 242
Query: 251 DNVDATFQDLEKPGVDEEPHQVLLRYEDGYQYQNIFGPLVKLEADYDKRLKESQTQEGIE 310
D+ +AT DL KPG+D EP V LRY D + Y +F PLV +EA+YD+R+KES +Q
Sbjct: 243 DHPEATVDDLNKPGLDREPDHVQLRYVDAHHYSKVFRPLVAIEAEYDRRVKESASQAVGT 302
Query: 311 VRWDVGLNKKTIAYFTLAK-TDSDMKLMHGDELRLRYVGEMHKA-WSGVGHVIKVPDNYG 368
VRW+ GL + +A+F L + D MKL GDELRL++ + + W+ +G V K+PDN+G
Sbjct: 303 VRWEQGLRQSVLAFFHLPQFADGVMKLAKGDELRLKHSQTVDGSEWTKIGSVFKIPDNHG 362
Query: 369 DDVGLELKSGAG-APLDCTSNFVVDFIWKSTSFDRMQLALRKFALDDSSVSGYIYRRLLG 427
D+VG+E++ + ++ F VD +W +T+F+R AL D ++S Y+Y++LLG
Sbjct: 363 DEVGIEIRGAVDKSVMESRIMFTVDVVWNATTFERQYKALAALLNDSKAISPYLYQKLLG 422
Query: 428 HEVEEVLFRVHLPKHFSAPNLPDLNRSQVYAVKHALQRPLSLIQGPPGTGKTVTSATIVY 487
H EE++ + LP+ S LP+LN SQ+ AVK L RPLSLIQGPPGTGKTV SATIVY
Sbjct: 423 HPAEEMMLKFDLPRRLSVAGLPELNSSQMQAVKQVLTRPLSLIQGPPGTGKTVVSATIVY 482
Query: 488 QLVRQNGGPVLVCAPSNTAVDQLTEKIHRTGLKVVRLCAKSREAMESSVSFLALHEQARA 547
LV++ G VLVC+PSN AVD L EKIH+TGLKVVRLCA+SRE E++V +L L Q +
Sbjct: 483 HLVQKTEGNVLVCSPSNIAVDHLAEKIHKTGLKVVRLCARSREHSETTVPYLTLQHQLKV 542
Query: 548 LGSADSELRKLTRLKEEAGELSXXXXXXXXXXXXXXXXXXXXXXXVICTTCVGAGDPRVA 607
+G A EL+KL +LK+EAGEL VIC TC A D R++
Sbjct: 543 MGGA--ELQKLIQLKDEAGELEFKDDLRYMQLKRVKEHELLAAADVICCTCSSAADARLS 600
Query: 608 RMRFQSILIDEGMQSTEPECMVPVVLGARQLILVGDHCQLGPVVMCKKAAKAGLSQSLFE 667
++R +++LIDE Q+TEPE +V ++ G RQL+LVGDHCQLGPVV+CKKAA AGLSQSLFE
Sbjct: 601 KIRTRTVLIDESTQATEPEILVSIMRGVRQLVLVGDHCQLGPVVICKKAAIAGLSQSLFE 660
Query: 668 RLVVLGIRPFRLEVQYRMHPELSRFPSDFFYEGSLQNGVSAEERRLHKIDFPWPRPDRPM 727
RLV+LGIRPFRL+VQYRMHP LS FPS+ FY+GSLQNGV+ +R + +D+ WP+P++P
Sbjct: 661 RLVLLGIRPFRLQVQYRMHPVLSEFPSNVFYDGSLQNGVTENDRHMTGVDWHWPKPNKPA 720
Query: 728 FFYVTQGQEEIAGSGTSYLNRTEAANVEKLTTRFLKAGVRPEQIGIITPYEGQRSYLVQH 787
FF+ G EE++ SGTS+LNRTEAANVEKL ++ +KAGV+P QIG+IT YEGQRS++V +
Sbjct: 721 FFWHCSGSEELSASGTSFLNRTEAANVEKLVSKLIKAGVQPHQIGVITSYEGQRSFIVNY 780
Query: 788 MQYQGSLHAKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLSDPRRLNVALTRA 847
M QG+L++KLY+ +E+ASVDAFQGREKD II++CVRSN+ GIGFLSDPRRLNVA+TRA
Sbjct: 781 MHTQGTLNSKLYENVEIASVDAFQGREKDYIIVTCVRSNDILGIGFLSDPRRLNVAITRA 840
Query: 848 KYGLIVVGNPKVLSKQPLWNHLLAFYKERRVLTEGPLSNLKESAIQFAKPKKLVNSQN 905
KYGL++VGN KVL++ LW+ L+ YK + +L EGP++ LK + A PK + ++N
Sbjct: 841 KYGLVLVGNAKVLARHDLWHELINHYKSKEMLYEGPINALK--PLNLALPKATIRTKN 896
>AF003740-7|AAC48142.2| 625|Caenorhabditis elegans Hypothetical
protein C41D11.7 protein.
Length = 625
Score = 143 bits (347), Expect = 5e-34
Identities = 128/451 (28%), Positives = 210/451 (46%), Gaps = 41/451 (9%)
Query: 448 LPDLNRSQVYAVKHALQ--RPLSLIQGPPGTGKTVTSATIVYQLVRQNGGPVLVCAPSNT 505
+P N Q A+K AL R L IQGPPGTGKT T ++ +L++Q V+V AP+
Sbjct: 63 IPFSNEKQRTAIKMALNENRKLVCIQGPPGTGKTFTLTLLLCRLIQQKK-QVVVLAPTRE 121
Query: 506 AVDQLTEKIHRTGLKVVRLCAKSREAMESSVSFLALHEQARALGSADSELRKLTRLKEEA 565
A+ + +T LK + + M+++ +++ RAL +A+ E+R L + +
Sbjct: 122 ALANIRMMTKKT-LKRMGIKVHEHALMDTNEYRDVINKSDRALMAAE-EVRDLRKAFDN- 178
Query: 566 GELSXXXXXXXXXXXXXXXXXXXXXXXV----ICTTCVGAG--DPRVARMRFQSIL--ID 617
GE++ + + +GA D + +F L ID
Sbjct: 179 GEITENVLDEMRQSIINRVRNEVGAEVIGNVRVAFATIGASFVDFVMKHKKFDPCLCIID 238
Query: 618 EGMQSTEPECMVPVVLGARQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--GIR 675
E Q E + P V +++++ GD QL +V +A GL S+ +R++
Sbjct: 239 EAAQVMEAQTW-PAVYKMKRIVMAGDPKQLPALVFTDEAKAFGLQNSVMDRILEKKNNFS 297
Query: 676 PFRLEVQYRMHPELSRFPSDFFYEGSLQNGVSAEERRLHKIDFPWPRPDR----PMFFYV 731
LE QYR + +++ + + FY L+ V E LH I P P+ R P+
Sbjct: 298 WIMLENQYRSNAKIATWSNTCFYHNQLKTDVKCHEYSLHTILNPQPKKFRNLFDPLVLID 357
Query: 732 TQGQEEI-------------------AGSGTSYLNRTEAANVEKLTTRFLKAGVRPEQIG 772
T + ++ G SY N EA R LK GV+P I
Sbjct: 358 TSLERDVEKRLETYEHAVFDTNSINKTKQGFSYANLAEAKIAIGHYQRLLKYGVQPSDIA 417
Query: 773 IITPYEGQRSYLVQHMQYQGSLHAKL-YQEIEVASVDAFQGREKDIIIMSCVRSNEHQGI 831
IITPY+GQ S + + M+ G+ + + + +VD+ QG+E +++I + VRSN + +
Sbjct: 418 IITPYKGQTSLVTKLMEEFGAETGYTDFVQTTIGTVDSVQGKEYEVVIFTMVRSNPRKTM 477
Query: 832 GFLSDPRRLNVALTRAKYGLIVVGNPKVLSK 862
GF+S+ RRLNV +TRAK + +GN +L++
Sbjct: 478 GFVSELRRLNVVITRAKRHFMFIGNGYLLAE 508
>Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical protein
ZK1067.2 protein.
Length = 2219
Score = 102 bits (245), Expect = 1e-21
Identities = 80/275 (29%), Positives = 140/275 (50%), Gaps = 18/275 (6%)
Query: 604 PRVARMRFQSILIDEGMQSTEPECMVPVVLGARQLILVGDHCQLGPVVMCKKAAKA-GLS 662
P + ++ + ++++E + E + ++ ++++GDH QL P + A GL
Sbjct: 1223 PTLEKVGPRILIVEEAAEVLEAHIISAMISTVEHVVMIGDHKQLRPNPAVHELGVAYGLR 1282
Query: 663 QSLFERLVVLGIRPFRLEVQYRMHPELS-RFPSDFFYEGSLQNGVSAEERRLHKIDFPWP 721
S+FERLV G+ +L Q+RM+ +S + FY+ N AE L+ D
Sbjct: 1283 ISMFERLVERGLPFSQLRQQHRMNLTISDKIVKLSFYD----NVTDAENVGLYP-DVQGM 1337
Query: 722 RPDRPMFFYVTQGQEEIAGSGTSYLNRTEAANVEKLTTRFLKAGVRPEQIGIITPYEGQR 781
+ +FF+ EE + S+LN+ E + L LK I ++ Y Q+
Sbjct: 1338 ATN--LFFWSHTSMEE-SPDEVSWLNKHEISMTVALVKHLLKQNYTTNDIVVLATYSAQK 1394
Query: 782 SYLV-QHMQYQGSLHAKLYQEIEVASVDAFQGREKDIIIMSCVRSN----EHQGIGFLSD 836
+ + ++ GS I V +VD+FQG+E+ I+I+S VRS+ E+ GIGFL+
Sbjct: 1395 NLMYREYANVFGSTPDS--NVIPVETVDSFQGKERKIVIVSLVRSHRGGRENTGIGFLAV 1452
Query: 837 PRRLNVALTRAKYGLIVVGN-PKVLSKQPLWNHLL 870
R+ VALTRA++G+ ++GN +++ LWN ++
Sbjct: 1453 ANRICVALTRAQHGMYIIGNGAYIMNNSELWNKIV 1487
Score = 46.8 bits (106), Expect = 8e-05
Identities = 35/108 (32%), Positives = 60/108 (55%), Gaps = 13/108 (12%)
Query: 421 IYRRLLGHEVEEV-LFRVHLPKHFSAPNL-----PD-LNRSQVYAVKHALQRPLSLIQGP 473
I+R L+G ++++ L +++ K ++ L PD ++ SQ A + + LSLIQGP
Sbjct: 773 IFRPLVGVDIKDSNLIQIN-KKWYNVSRLLDEFHPDYMDESQRLAFCNTFKYELSLIQGP 831
Query: 474 PGTGKTVTSATIVYQLVRQNG-----GPVLVCAPSNTAVDQLTEKIHR 516
PGTGKT IV +++ P+LV +N+ +D L E+I++
Sbjct: 832 PGTGKTHIGVQIVKTILQNRSYWKITEPILVVCFTNSGLDNLLERIYQ 879
>AL132853-9|CAB60444.4| 1467|Caenorhabditis elegans Hypothetical
protein Y80D3A.2 protein.
Length = 1467
Score = 100 bits (239), Expect = 6e-21
Identities = 84/262 (32%), Positives = 131/262 (50%), Gaps = 19/262 (7%)
Query: 610 RFQSILIDEGMQSTEPECMVPVVL-----GARQL---ILVGDHCQLGPVVMCKKAAK-AG 660
R+ +I+++E Q E E +P++L G +L I++GDH QL PVV + K +
Sbjct: 1057 RYDNIVMEEAAQILEVETFIPLLLQNPQDGHNRLKRWIMIGDHHQLPPVVQNQAFQKYSN 1116
Query: 661 LSQSLFERLVVLGIRPFRLEVQYRMHPELSR-FPSDFFYEGSLQN--GVSAEERRLHKID 717
+ QSLF RLV L + +L+ Q R +++ + + G+L + G+ +
Sbjct: 1117 MEQSLFARLVRLSVPNVQLDRQGRARAQIAELYQWRYNGLGNLPHVDGLPQFQNANAGFA 1176
Query: 718 FPWPRPDRPMFFYVTQGQEEIAGSGTSYLNRTEAANVEKLTTRFLKAGVRPEQIGIITPY 777
FP+ D P F G E S Y N EA L T G E+I I+T Y
Sbjct: 1177 FPFQFIDIPDF----NGHGETQPSPHFYQNLGEAEYACALYTYMRILGYPAEKISILTTY 1232
Query: 778 EGQRSYLVQHMQYQGSLHAKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLSDP 837
GQ + Q + + + +V++VD +QG++ D II+S V++ + IG + D
Sbjct: 1233 NGQAQLIRDVFQRRCDTNPLIGMPAKVSTVDKYQGQQNDFIILSLVKT---RNIGHIRDV 1289
Query: 838 RRLNVALTRAKYGLIVVGNPKV 859
RRL VAL+RA+ GL V+G KV
Sbjct: 1290 RRLVVALSRARLGLYVLGRSKV 1311
Score = 46.8 bits (106), Expect = 8e-05
Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 454 SQVYAVKHALQRPLSLIQGPPGTGKTVTSATIVYQLVRQ-NGGPVLVCAPSNTAVDQLTE 512
SQV A+K +Q L+++ GPPGTGKT + I+ + L+ SN A++QL E
Sbjct: 809 SQVEAIKSGMQPGLTMVVGPPGTGKTDVAVQIISNIYHNWPNQRTLIVTHSNQALNQLFE 868
Query: 513 KI 514
KI
Sbjct: 869 KI 870
>Z48178-3|CAC42246.1| 1553|Caenorhabditis elegans Hypothetical protein
C05C10.2b protein.
Length = 1553
Score = 98.7 bits (235), Expect = 2e-20
Identities = 78/241 (32%), Positives = 119/241 (49%), Gaps = 26/241 (10%)
Query: 640 LVGDHCQLGPVVMCKKAAKAGLSQ----SLFERLVVLGIRPF-RLEVQYRMHPELSRFPS 694
L+GD QL P C++ + L + ER + + P L YR HP+ + S
Sbjct: 1233 LIGDIHQLPPY--CEEGLEGKLKDFGIGNTMERAIKEKMFPVCTLRNVYRCHPKTTELLS 1290
Query: 695 DFFYEGSLQNGVS--AEERRLHKIDFPWPRPDRPMFFYVTQGQEEIAGSGTSYLNRTEAA 752
+ FY+G+L +GVS A + K D WP P PM F G G+ TS N +E +
Sbjct: 1291 ELFYDGALVSGVSELARSDFMTKRDDFWPNPKFPMMFVNNTGASTKMGTSTS--NSSEKS 1348
Query: 753 NVEKLTTRFL---KAGVRPEQIGIITPYEGQRSYLVQHMQYQGSLHAKLYQEIEVASVDA 809
V ++ + + V P IG+I+ Y Q S L +H++ G ++ +VDA
Sbjct: 1349 IVGEIVQNLINDPRNPVNPSDIGVISFYSAQTSILTEHLRGSG---------VKCGTVDA 1399
Query: 810 FQGREKDIIIMSCVRSNEHQGIGFLSDPRRLNVALTRAKYGLIVVGNPKVLSKQPLWNHL 869
FQG EK+IIIM C S + F+ RLNVA++RAK I++G+ L + W+ +
Sbjct: 1400 FQGSEKEIIIM-C--STNERISDFMQLSNRLNVAMSRAKQVTIIIGHLDGLRRANYWSTI 1456
Query: 870 L 870
+
Sbjct: 1457 V 1457
>Z48178-2|CAA88201.1| 1551|Caenorhabditis elegans Hypothetical protein
C05C10.2a protein.
Length = 1551
Score = 98.7 bits (235), Expect = 2e-20
Identities = 78/241 (32%), Positives = 119/241 (49%), Gaps = 26/241 (10%)
Query: 640 LVGDHCQLGPVVMCKKAAKAGLSQ----SLFERLVVLGIRPF-RLEVQYRMHPELSRFPS 694
L+GD QL P C++ + L + ER + + P L YR HP+ + S
Sbjct: 1233 LIGDIHQLPPY--CEEGLEGKLKDFGIGNTMERAIKEKMFPVCTLRNVYRCHPKTTELLS 1290
Query: 695 DFFYEGSLQNGVS--AEERRLHKIDFPWPRPDRPMFFYVTQGQEEIAGSGTSYLNRTEAA 752
+ FY+G+L +GVS A + K D WP P PM F G G+ TS N +E +
Sbjct: 1291 ELFYDGALVSGVSELARSDFMTKRDDFWPNPKFPMMFVNNTGASTKMGTSTS--NSSEKS 1348
Query: 753 NVEKLTTRFL---KAGVRPEQIGIITPYEGQRSYLVQHMQYQGSLHAKLYQEIEVASVDA 809
V ++ + + V P IG+I+ Y Q S L +H++ G ++ +VDA
Sbjct: 1349 IVGEIVQNLINDPRNPVNPSDIGVISFYSAQTSILTEHLRGSG---------VKCGTVDA 1399
Query: 810 FQGREKDIIIMSCVRSNEHQGIGFLSDPRRLNVALTRAKYGLIVVGNPKVLSKQPLWNHL 869
FQG EK+IIIM C S + F+ RLNVA++RAK I++G+ L + W+ +
Sbjct: 1400 FQGSEKEIIIM-C--STNERISDFMQLSNRLNVAMSRAKQVTIIIGHLDGLRRANYWSTI 1456
Query: 870 L 870
+
Sbjct: 1457 V 1457
>Z75529-3|CAA99786.2| 1099|Caenorhabditis elegans Hypothetical protein
C44H9.4 protein.
Length = 1099
Score = 87.0 bits (206), Expect = 6e-17
Identities = 68/256 (26%), Positives = 113/256 (44%), Gaps = 28/256 (10%)
Query: 679 LEVQYRMHPELSRFPSDFFYEGSLQNGVSAEERRLHKIDFP--WPRPDRPMFFYVTQGQE 736
L + YR HP ++ SD FY G L +GV +R P WP P+ V ++
Sbjct: 819 LRLVYRCHPTTTKILSDLFYNGQLISGVEKNQRDEFMRMRPDIWPNSSFPIL--VLNHEK 876
Query: 737 EIAGSGTSYLNRTEAANVEKLTTRFLKA----GVRPEQIGIITPYEGQRSYLVQHMQYQG 792
+ GTS N +E V ++ + K G+ IGII+ Y+ Q S L ++
Sbjct: 877 DGYRMGTSVANNSEKDQVVRIVSLLTKKVKGYGLSESDIGIISFYKAQTSLLADALK--- 933
Query: 793 SLHAKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLSDPRRLNVALTRAKYGLI 852
+++ ++DAFQG E++++I+ C N F+ + R+NVA++RA+ I
Sbjct: 934 ------KTDVKCGTIDAFQGTEREVMIVCCTNKNPSL---FMQEGTRVNVAMSRARQATI 984
Query: 853 VVGNPKVLSKQPLWNHLLAFYK----ERRVLTEGPLSNLKESAIQF----AKPKKLVNSQ 904
++GN L K W+ + + V T G + +Q K K+ +Q
Sbjct: 985 IIGNIAKLKKAKHWDTIAQSAQINKCSMEVSTFGGSEQKQPQMVQIKCTAKKSNKIQKNQ 1044
Query: 905 NPGSHFMSTSMFDARE 920
N G H + +E
Sbjct: 1045 NEGKHISISQTVKTKE 1060
>Z50070-2|CAB54253.1| 1069|Caenorhabditis elegans Hypothetical protein
F43G6.1b protein.
Length = 1069
Score = 75.8 bits (178), Expect = 1e-13
Identities = 46/117 (39%), Positives = 71/117 (60%), Gaps = 10/117 (8%)
Query: 740 GSGTSYLNRTEAANVEKLTTRFLKAGVRPEQIGIITPYEGQRSYLVQHMQYQGSLHAKLY 799
G G N EA + +L +F+ +GV+P +IG+++ Y Q V H+ +G L++
Sbjct: 934 GEGGGMCNDGEAKLISELCQQFVMSGVKPHEIGVMSAYRRQ----VDHI--RGILNS--- 984
Query: 800 QEIEVASVDAFQGREKDIIIMSCV-RSNEHQGIGFLSDPRRLNVALTRAKYGLIVVG 855
E+EV ++D++QGREK +II S +N + L D RR+NVALTRA+ L+VVG
Sbjct: 985 DELEVNTIDSYQGREKRVIIWSLTWTNNSTKKSELLKDERRVNVALTRARQKLVVVG 1041
Score = 54.0 bits (124), Expect = 5e-07
Identities = 36/103 (34%), Positives = 54/103 (52%), Gaps = 4/103 (3%)
Query: 611 FQSILIDEGMQSTEPECMVPVVLGARQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLV 670
F +++DE EP ++PV+ + + +LVGD QL P+V+ +KA + G S E+L
Sbjct: 784 FDVVIVDEASMVLEP-LLLPVLATSNKFVLVGDCKQLTPLVVSRKAKQEGAGISTMEKLQ 842
Query: 671 VL--GIRPFRLEVQYRMHPELSRFPSDFFYEGSLQNGVSAEER 711
G+ L QYRM+ E+S S FYE L G + R
Sbjct: 843 QSHPGV-VVSLTSQYRMNREISVLSSKLFYENRLICGNESVSR 884
Score = 41.1 bits (92), Expect = 0.004
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 451 LNRSQVYAVKHALQ-RPLSLIQGPPGTGKTVTSATIVYQLVRQNGGPVLVCAPSNTAVDQ 509
LN Q AV HAL +++G PG+GKT + ++ LV N VL+ A +++AVD
Sbjct: 650 LNNEQRKAVVHALATEDFMMVEGLPGSGKTTLISVLIQCLVATN-KKVLLAAFTHSAVDN 708
Query: 510 LTEKIHR--TGLKVVRLCAKS 528
+ K+ + K++RL + S
Sbjct: 709 ILTKLTKEVAAEKILRLGSSS 729
>Z50070-1|CAA90399.1| 1105|Caenorhabditis elegans Hypothetical protein
F43G6.1a protein.
Length = 1105
Score = 75.8 bits (178), Expect = 1e-13
Identities = 46/117 (39%), Positives = 71/117 (60%), Gaps = 10/117 (8%)
Query: 740 GSGTSYLNRTEAANVEKLTTRFLKAGVRPEQIGIITPYEGQRSYLVQHMQYQGSLHAKLY 799
G G N EA + +L +F+ +GV+P +IG+++ Y Q V H+ +G L++
Sbjct: 970 GEGGGMCNDGEAKLISELCQQFVMSGVKPHEIGVMSAYRRQ----VDHI--RGILNS--- 1020
Query: 800 QEIEVASVDAFQGREKDIIIMSCV-RSNEHQGIGFLSDPRRLNVALTRAKYGLIVVG 855
E+EV ++D++QGREK +II S +N + L D RR+NVALTRA+ L+VVG
Sbjct: 1021 DELEVNTIDSYQGREKRVIIWSLTWTNNSTKKSELLKDERRVNVALTRARQKLVVVG 1077
Score = 54.0 bits (124), Expect = 5e-07
Identities = 36/103 (34%), Positives = 54/103 (52%), Gaps = 4/103 (3%)
Query: 611 FQSILIDEGMQSTEPECMVPVVLGARQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLV 670
F +++DE EP ++PV+ + + +LVGD QL P+V+ +KA + G S E+L
Sbjct: 820 FDVVIVDEASMVLEP-LLLPVLATSNKFVLVGDCKQLTPLVVSRKAKQEGAGISTMEKLQ 878
Query: 671 VL--GIRPFRLEVQYRMHPELSRFPSDFFYEGSLQNGVSAEER 711
G+ L QYRM+ E+S S FYE L G + R
Sbjct: 879 QSHPGV-VVSLTSQYRMNREISVLSSKLFYENRLICGNESVSR 920
Score = 41.1 bits (92), Expect = 0.004
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 451 LNRSQVYAVKHALQ-RPLSLIQGPPGTGKTVTSATIVYQLVRQNGGPVLVCAPSNTAVDQ 509
LN Q AV HAL +++G PG+GKT + ++ LV N VL+ A +++AVD
Sbjct: 686 LNNEQRKAVVHALATEDFMMVEGLPGSGKTTLISVLIQCLVATN-KKVLLAAFTHSAVDN 744
Query: 510 LTEKIHR--TGLKVVRLCAKS 528
+ K+ + K++RL + S
Sbjct: 745 ILTKLTKEVAAEKILRLGSSS 765
>Z46828-1|CAA86856.1| 542|Caenorhabditis elegans Hypothetical
protein R03D7.2 protein.
Length = 542
Score = 59.7 bits (138), Expect = 1e-08
Identities = 66/264 (25%), Positives = 117/264 (44%), Gaps = 24/264 (9%)
Query: 610 RFQSILIDEGMQ-STEPECMVPVVLGARQLILVGDHCQLGPVVMCKKAAKAGLSQSLFER 668
RF IDE Q + + +L ++ILVGD QL P + ++A A L ++
Sbjct: 215 RFDITFIDEASQLALYVLGSLATMLPKSRMILVGDMHQLPPYM--EEALPAELKRAAIGE 272
Query: 669 LVVLGIRPFRLEVQY--RMH--PEL-SRFPSDFFYEGSLQN---GVSAEERRLHKIDFPW 720
+ L ++ R + R+H P++ + D FY +L + GV+ + L + P
Sbjct: 273 PLTLAVKGRRWPSMHLTRVHRCPKMITEVLGDLFYGNTLTSSKPGVT-DIPVLKAMGLPS 331
Query: 721 PRPDRPMFFYVTQGQEEIAGSGTSYLNRTEAANVEKLTTRFLKAGVRPEQIGIITPYEGQ 780
P +F T Q + S ++ A + + TR+ + I+ Y Q
Sbjct: 332 RHP--MVFVNYTSPQTAVGKSFSNEGEARYALQLVEALTRYASTANKKITAAILNFYGAQ 389
Query: 781 RSYLVQHMQYQGSLHAKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLSDPRRL 840
SY+ ++ E+ V ++D QG+E D+ I+ RS+ ++ FL + R+
Sbjct: 390 YSYV----------YSMAEDEVTVNTIDGCQGQEYDVTIVLLTRSDPYERSKFLVNANRI 439
Query: 841 NVALTRAKYGLIVVGNPKVLSKQP 864
NVAL+R K +++G + QP
Sbjct: 440 NVALSRPKIATVIIGQRHLTGNQP 463
>U55857-5|AAA98031.1| 602|Caenorhabditis elegans Hypothetical
protein K08D10.5 protein.
Length = 602
Score = 56.8 bits (131), Expect = 7e-08
Identities = 59/241 (24%), Positives = 107/241 (44%), Gaps = 23/241 (9%)
Query: 632 VLGARQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPFRLEVQY--RMHPEL 689
+L ++ILVGD QL P + A A L ++ + L ++ R + R+H
Sbjct: 337 LLPKTRIILVGDMHQLPPYT--EDALPAELKRAAVGEPLTLAVKGRRWSSMHLTRVH-RC 393
Query: 690 SRFPSDFFYEGSLQNGVSAEERRLHKIDF--PWPRPDRPMFFYVTQGQEEIAGSGTSYLN 747
+ +D N +++ + ++++ P F +V ++ G S+ N
Sbjct: 394 PKMITDLLGAVFYGNTLTSTRKAVNRVPILEAMELPSHHPFVFVNYISQQTQ-VGKSFSN 452
Query: 748 RTEAANVEKLTTRFLKAGVRPEQ----IGIITPYEGQRSYLVQHMQYQGSLHAKLYQEIE 803
EA +L T LK R + + ++ Y Q SY V + G +
Sbjct: 453 ENEARYALQLVTA-LKRHAREQNTTVSVAVLNFYGAQYSY-VYSIAEDG---------VR 501
Query: 804 VASVDAFQGREKDIIIMSCVRSNEHQGIGFLSDPRRLNVALTRAKYGLIVVGNPKVLSKQ 863
V ++D QG+E D+ I+ RS+ ++ FL +P R+NVAL+R+K +V+G ++
Sbjct: 502 VNTIDGCQGQEYDVSIVLLTRSDPYEKSKFLVNPNRINVALSRSKMATVVIGQRHLIGNH 561
Query: 864 P 864
P
Sbjct: 562 P 562
>AC006642-8|AAF39827.2| 365|Caenorhabditis elegans Laterally
symmetric (defectivein lateral asymmetry) protein 2,
isoform a protein.
Length = 365
Score = 33.1 bits (72), Expect = 1.0
Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 1/91 (1%)
Query: 39 TLPSQSQTQASQHDHGLSSSNQVNGIGRIELSSKISNVTNTIPELQFEEEDEALYSNKEL 98
T + Q+Q + D LS N + S N E+ +E+D + Y
Sbjct: 3 TRRNAKQSQRNSADQSLSEFNSSSMTHGSNQSVYHHNQHMDDSEMMMDEQDYSQYQ-MGF 61
Query: 99 PDHACKYCGIHDPATVVMCNICNKWFCNGRG 129
P+ G+ P V CN+CNK F + +G
Sbjct: 62 PEEDEMVEGMMTPRAVHQCNVCNKIFVSYKG 92
>U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein 418
protein.
Length = 1829
Score = 32.7 bits (71), Expect = 1.4
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 475 GTGKTVTSATIVYQLVRQN--GGPVLVCAPSNTAVD 508
G GKTV S T +Y L+++ GP L+ AP +T ++
Sbjct: 630 GLGKTVQSLTFLYSLMKEGHCKGPFLIAAPLSTIIN 665
>AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.
Length = 1829
Score = 32.7 bits (71), Expect = 1.4
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 475 GTGKTVTSATIVYQLVRQN--GGPVLVCAPSNTAVD 508
G GKTV S T +Y L+++ GP L+ AP +T ++
Sbjct: 630 GLGKTVQSLTFLYSLMKEGHCKGPFLIAAPLSTIIN 665
>Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical
protein T14G8.1 protein.
Length = 1787
Score = 32.3 bits (70), Expect = 1.8
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 475 GTGKTVTSATIVYQLVRQ--NGGPVLVCAPSNTAVD 508
G GKTV S T +Y L+++ GP L+ AP +T ++
Sbjct: 644 GLGKTVQSLTFLYTLMKEGHTKGPFLIAAPLSTIIN 679
>Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical
protein T14G8.1 protein.
Length = 1787
Score = 32.3 bits (70), Expect = 1.8
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 475 GTGKTVTSATIVYQLVRQ--NGGPVLVCAPSNTAVD 508
G GKTV S T +Y L+++ GP L+ AP +T ++
Sbjct: 644 GLGKTVQSLTFLYTLMKEGHTKGPFLIAAPLSTIIN 679
>AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein.
Length = 1787
Score = 32.3 bits (70), Expect = 1.8
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 475 GTGKTVTSATIVYQLVRQ--NGGPVLVCAPSNTAVD 508
G GKTV S T +Y L+++ GP L+ AP +T ++
Sbjct: 644 GLGKTVQSLTFLYTLMKEGHTKGPFLIAAPLSTIIN 679
>Z68751-8|CAA92978.1| 1474|Caenorhabditis elegans Hypothetical
protein F01G4.1 protein.
Length = 1474
Score = 31.5 bits (68), Expect = 3.2
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 428 HEVEEVLFRVHLPKHFSAPNL---PDLNRSQVYAVKHALQRPLSLIQGPPGTGKTVTSAT 484
H+++E + + H PNL P + + V ++ G GKT+ + +
Sbjct: 511 HKIKEKVVKQHTTMGGGDPNLLLKPYQIKGLEWMVSLYNNNLNGILADEMGLGKTIQTIS 570
Query: 485 IVYQL--VRQNGGPVLVCAPSNT 505
+V L V+QN GP LV P +T
Sbjct: 571 LVTYLMEVKQNNGPYLVIVPLST 593
>Z68341-5|CAA92768.1| 1474|Caenorhabditis elegans Hypothetical
protein F01G4.1 protein.
Length = 1474
Score = 31.5 bits (68), Expect = 3.2
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 428 HEVEEVLFRVHLPKHFSAPNL---PDLNRSQVYAVKHALQRPLSLIQGPPGTGKTVTSAT 484
H+++E + + H PNL P + + V ++ G GKT+ + +
Sbjct: 511 HKIKEKVVKQHTTMGGGDPNLLLKPYQIKGLEWMVSLYNNNLNGILADEMGLGKTIQTIS 570
Query: 485 IVYQL--VRQNGGPVLVCAPSNT 505
+V L V+QN GP LV P +T
Sbjct: 571 LVTYLMEVKQNNGPYLVIVPLST 593
>U80437-18|AAB37629.1| 518|Caenorhabditis elegans Cell division
cycle related protein6 protein.
Length = 518
Score = 31.5 bits (68), Expect = 3.2
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 470 IQGPPGTGKTVTSATIVYQLVRQNGGPVLVCAPSNT 505
+ G PGTGKT T+ ++ L + ++ CA +NT
Sbjct: 200 VSGQPGTGKTATTMRVLKSLGKSVRSCIVNCASTNT 235
>AF230280-1|AAG16655.1| 1474|Caenorhabditis elegans SWI2/SNF2-like
protein protein.
Length = 1474
Score = 31.5 bits (68), Expect = 3.2
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 428 HEVEEVLFRVHLPKHFSAPNL---PDLNRSQVYAVKHALQRPLSLIQGPPGTGKTVTSAT 484
H+++E + + H PNL P + + V ++ G GKT+ + +
Sbjct: 511 HKIKEKVVKQHTTMGGGDPNLLLKPYQIKGLEWMVSLYNNNLNGILADEMGLGKTIQTIS 570
Query: 485 IVYQL--VRQNGGPVLVCAPSNT 505
+V L V+QN GP LV P +T
Sbjct: 571 LVTYLMEVKQNNGPYLVIVPLST 593
>AF038618-3|AAB92073.1| 572|Caenorhabditis elegans Hypothetical
protein F42G8.7 protein.
Length = 572
Score = 30.7 bits (66), Expect = 5.6
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 254 DATFQDLEKPGVDEEPHQVLLRYEDGYQYQNIFGPLVKLEADYDKRLK 301
+ TF+++E+ D +P +LLR +D + + F ++ E D D LK
Sbjct: 213 ELTFENMEEMVEDGKPLLILLRKKDDIETEKQFVTTIRRELDQDTLLK 260
>AC006642-9|AAX88828.1| 339|Caenorhabditis elegans Laterally
symmetric (defectivein lateral asymmetry) protein 2,
isoform b protein.
Length = 339
Score = 30.7 bits (66), Expect = 5.6
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 82 ELQFEEEDEALYSNKELPDHACKYCGIHDPATVVMCNICNKWFCNGRG 129
E+ +E+D + Y P+ G+ P V CN+CNK F + +G
Sbjct: 20 EMMMDEQDYSQYQ-MGFPEEDEMVEGMMTPRAVHQCNVCNKIFVSYKG 66
>AC006816-2|AAK85508.1| 352|Caenorhabditis elegans Hypothetical
protein Y71D11A.3a protein.
Length = 352
Score = 30.3 bits (65), Expect = 7.4
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 204 WDQEQWKPLISDRAFLSWLVKVPSETEQ 231
WD W + D+ ++ WLV +PSET Q
Sbjct: 187 WDMHMWDGRL-DKYWMPWLVGMPSETAQ 213
>AC006816-1|AAN39661.1| 401|Caenorhabditis elegans Hypothetical
protein Y71D11A.3b protein.
Length = 401
Score = 30.3 bits (65), Expect = 7.4
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 204 WDQEQWKPLISDRAFLSWLVKVPSETEQ 231
WD W + D+ ++ WLV +PSET Q
Sbjct: 236 WDMHMWDGRL-DKYWMPWLVGMPSETAQ 262
>AB071420-1|BAB86940.1| 401|Caenorhabditis elegans
2-amino-3-carboxylmuconate-6-semialdehydedecarboxylase
protein.
Length = 401
Score = 30.3 bits (65), Expect = 7.4
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 204 WDQEQWKPLISDRAFLSWLVKVPSETEQ 231
WD W + D+ ++ WLV +PSET Q
Sbjct: 236 WDMHMWDGRL-DKYWMPWLVGMPSETAQ 262
>Z70750-2|CAA94737.1| 756|Caenorhabditis elegans Hypothetical
protein C50F4.2 protein.
Length = 756
Score = 29.9 bits (64), Expect = 9.7
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 654 KKAAKAGLSQSLFERLVVLGIRPFRLEVQYRMHPELSRFPSDFFYEGSLQNGVSAEERRL 713
KKAA + +F L+V+G + Q ++ E RF + F EG + V+ E R L
Sbjct: 92 KKAAAIMFDKRIFH-LIVIGGDGSLMGAQ-KLKEEWGRFGEELFAEGKITEEVANEGREL 149
Query: 714 H 714
H
Sbjct: 150 H 150
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.319 0.135 0.402
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,221,094
Number of Sequences: 27539
Number of extensions: 1022261
Number of successful extensions: 2498
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 2429
Number of HSP's gapped (non-prelim): 44
length of query: 1032
length of database: 12,573,161
effective HSP length: 89
effective length of query: 943
effective length of database: 10,122,190
effective search space: 9545225170
effective search space used: 9545225170
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 64 (29.9 bits)
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