Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001540-TA|BGIBMGA001540-PA|IPR006935|Type III
restriction enzyme, res subunit
(1032 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g47010.1 68418.m05794 RNA helicase, putative similar to type ... 1175 0.0
At5g35970.1 68418.m04332 DNA-binding protein, putative similar t... 188 2e-47
At2g03270.1 68415.m00280 DNA-binding protein, putative similar t... 184 4e-46
At2g19120.1 68415.m02232 tRNA-splicing endonuclease positive eff... 183 5e-46
At4g30100.1 68417.m04280 tRNA-splicing endonuclease positive eff... 181 3e-45
At4g15570.1 68417.m02379 tRNA-splicing endonuclease positive eff... 174 2e-43
At5g37030.1 68418.m04441 tRNA-splicing endonuclease positive eff... 168 2e-41
At5g52090.1 68418.m06466 tRNA-splicing endonuclease positive eff... 162 1e-39
At1g16800.1 68414.m02018 tRNA-splicing endonuclease positive eff... 161 2e-39
At5g37150.1 68418.m04460 tRNA-splicing endonuclease positive eff... 161 3e-39
At1g05460.1 68414.m00555 RNA helicase SDE3 (SDE3) identical to R... 158 2e-38
At1g65780.1 68414.m07465 tRNA-splicing endonuclease positive eff... 156 8e-38
At1g65810.1 68414.m07468 tRNA-splicing endonuclease positive eff... 153 6e-37
At5g37160.1 68418.m04461 tRNA-splicing endonuclease positive eff... 151 2e-36
At5g37140.1 68418.m04458 tRNA-splicing endonuclease positive eff... 151 3e-36
At4g05540.1 68417.m00843 tRNA-splicing endonuclease positive eff... 151 3e-36
At1g08840.1 68414.m00984 DNA replication helicase, putative simi... 125 2e-28
At2g38770.1 68415.m04760 expressed protein 87 8e-17
At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly id... 35 0.32
At1g21690.2 68414.m02715 replication factor C 37 kDa, putative S... 34 0.43
At1g21690.1 68414.m02714 replication factor C 37 kDa, putative S... 33 0.74
At1g32585.1 68414.m04021 VQ motif-containing protein-related con... 33 0.98
At4g16610.1 68417.m02512 zinc finger (C2H2 type) family protein ... 32 1.7
At3g62850.1 68416.m07061 zinc finger protein-related contains Pf... 31 3.0
At1g63160.1 68414.m07138 replication factor C 40 kDa, putative s... 31 3.0
At3g42790.1 68416.m04474 PHD finger family protein contains PHD-... 31 4.0
At2g02480.1 68415.m00187 DNA polymerase-related weak similarity ... 31 4.0
At2g02470.1 68415.m00186 PHD finger family protein contains Pfam... 31 4.0
At1g35530.1 68414.m04411 DEAD/DEAH box helicase, putative low si... 31 4.0
At1g19870.1 68414.m02492 calmodulin-binding family protein conta... 31 5.2
At1g06720.1 68414.m00714 expressed protein contains Pfam domain,... 30 6.9
At4g08113.1 68417.m01331 myosin heavy chain-related similar to M... 30 9.2
At3g56510.1 68416.m06284 TBP-binding protein, putative similar t... 30 9.2
At2g21720.1 68415.m02584 hypothetical protein contains Pfam prof... 30 9.2
At1g43870.1 68414.m05054 hypothetical protein similar to fructos... 30 9.2
>At5g47010.1 68418.m05794 RNA helicase, putative similar to type 1
RNA helicase pNORF1 [Homo sapiens] GI:1885356
Length = 1254
Score = 1175 bits (2910), Expect = 0.0
Identities = 546/851 (64%), Positives = 659/851 (77%), Gaps = 9/851 (1%)
Query: 61 VNGIGRIELSSKISNVTNTIPELQFEE--EDEAL-YSNKELPDHACKYCGIHDPATVVMC 117
V G G + SS++ + + L FEE +D+ Y + +HACKYCGI +PA VV C
Sbjct: 95 VGGSGGVSSSSQVDALAAGVGNLNFEETGDDDGFDYGKNDFTEHACKYCGISNPACVVRC 154
Query: 118 NI--CNKWFCNGRGNTSGSHIINHLVRAKHKEAALHRDGPLGETLLECYSCGARNVFVLG 175
N+ C KWFCN RGNTSGSHI+NHLVRAKHKE LHRD PLGET+LECY+CG RNVF+LG
Sbjct: 155 NVASCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHRDSPLGETILECYNCGCRNVFLLG 214
Query: 176 FIPAKADSVVVLLCRQPCAAQSSLKDMNWDQEQWKPLISDRAFLSWLVKVPSETEQMRAR 235
FI AK DSVVVLLCR PC ++LKDMNWD QW PLI DR FL WLVKVPSE EQ+RAR
Sbjct: 215 FISAKTDSVVVLLCRDPCLNVNALKDMNWDLSQWCPLIDDRCFLPWLVKVPSEQEQLRAR 274
Query: 236 QVTPQQIGRLEELWRDNVDATFQDLEKPGVDEEPHQVLLRYEDGYQYQNIFGPLVKLEAD 295
Q++ QQI ++EELW+ N DAT +DLEKPGVD+EP V +YED YQYQN+F PL+KLEAD
Sbjct: 275 QISAQQINKIEELWKTNPDATLEDLEKPGVDDEPQPVQPKYEDAYQYQNVFAPLIKLEAD 334
Query: 296 YDKRLKESQTQEGIEVRWDVGLNKKTIAYFTLAKTDSDMKLMHGDELRLRYVGE-MHKAW 354
YDK +KESQ++E + VRWD+GLNKK +AYF K +++++L+ GDELRLRY G+ +H +W
Sbjct: 335 YDKMMKESQSKENLTVRWDIGLNKKRVAYFVFPKEENELRLVPGDELRLRYSGDAVHPSW 394
Query: 355 SGVGHVIKVPDNYGDDVGLELKSGAGAPLDCTSNFVVDFIWKSTSFDRMQLALRKFALDD 414
VGHVIK+ ++V LEL++ G P+D F VDF+WKSTSFDRMQ A++ FA+D+
Sbjct: 395 QSVGHVIKLTAQ--EEVALELRANQGVPIDVNHGFSVDFVWKSTSFDRMQGAMKNFAVDE 452
Query: 415 SSVSGYIYRRLLGHEVEEVLFRVHLPKHFSAPNLPDLNRSQVYAVKHALQRPLSLIQGPP 474
+SVSGYIY +LLGHEVE + R LP+ F P LP+LN SQV AVK LQ+P+SLIQGPP
Sbjct: 453 TSVSGYIYHQLLGHEVEAQMVRNTLPRRFGVPGLPELNASQVNAVKSVLQKPISLIQGPP 512
Query: 475 GTGKTVTSATIVYQLVRQNGGPVLVCAPSNTAVDQLTEKIHRTGLKVVRLCAKSREAMES 534
GTGKTVTSA IVY + +Q G VLVCAPSN AVDQL EKI TGLKVVRLCAKSREA+ S
Sbjct: 513 GTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSS 572
Query: 535 SVSFLALHEQARALGSAD-SELRKLTRLKEEAGELSXXXXXXXXXXXXXXXXXXXXXXXV 593
V +L LH Q R L +++ SEL KL +LK+E GELS V
Sbjct: 573 PVEYLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKNLKRATEREITQSADV 632
Query: 594 ICTTCVGAGDPRVARMRFQSILIDEGMQSTEPECMVPVVLGARQLILVGDHCQLGPVVMC 653
IC TCVGA D R++ RF+ +LIDE Q+TEPEC++P+VLG +Q++LVGDHCQLGPV+MC
Sbjct: 633 ICCTCVGAADLRLSNFRFRQVLIDESTQATEPECLIPLVLGVKQVVLVGDHCQLGPVIMC 692
Query: 654 KKAAKAGLSQSLFERLVVLGIRPFRLEVQYRMHPELSRFPSDFFYEGSLQNGVSAEERRL 713
KKAA+AGL+QSLFERLV LGI+P RL+VQYRMHP LS FPS+ FYEG+LQNGV+ ER+
Sbjct: 693 KKAARAGLAQSLFERLVTLGIKPIRLQVQYRMHPALSEFPSNSFYEGTLQNGVTIIERQT 752
Query: 714 HKIDFPWPRPDRPMFFYVTQGQEEIAGSGTSYLNRTEAANVEKLTTRFLKAGVRPEQIGI 773
IDFPWP P+RPMFFYV GQEEI+ SGTSYLNRTEAANVEKL T FLK+GV P QIG+
Sbjct: 753 TGIDFPWPVPNRPMFFYVQLGQEEISASGTSYLNRTEAANVEKLVTAFLKSGVVPSQIGV 812
Query: 774 ITPYEGQRSYLVQHMQYQGSLHAKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGF 833
ITPYEGQR+Y+V +M GSL +LY+EIEVASVD+FQGREKD II+SCVRSNEHQGIGF
Sbjct: 813 ITPYEGQRAYIVNYMARNGSLRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGF 872
Query: 834 LSDPRRLNVALTRAKYGLIVVGNPKVLSKQPLWNHLLAFYKERRVLTEGPLSNLKESAIQ 893
L+DPRRLNVALTRA+YG++++GNPKVLSKQPLWN LL YKE L EGPL+NLK+S +Q
Sbjct: 873 LNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLTHYKEHECLVEGPLNNLKQSMVQ 932
Query: 894 FAKPKKLVNSQ 904
F KP+K+ N +
Sbjct: 933 FQKPRKIYNDR 943
>At5g35970.1 68418.m04332 DNA-binding protein, putative similar to
SWISS-PROT:Q60560 DNA-binding protein SMUBP-2
(Immunoglobulin MU binding protein 2, SMUBP-2)
[Mesocricetus auratus]
Length = 961
Score = 188 bits (457), Expect = 2e-47
Identities = 150/438 (34%), Positives = 222/438 (50%), Gaps = 45/438 (10%)
Query: 450 DLNRSQVYAVKHALQRPLSLIQGPPGTGKTVTSATIVYQLVRQNGGPVLVCAPSNTAVDQ 509
D ++ + A+ +RP+ ++QGPPGTGKT ++ V+Q G VLV AP+N AVD
Sbjct: 488 DSSQRRAIALGVNKKRPVMIVQGPPGTGKTGMLKEVITLAVQQ-GERVLVTAPTNAAVDN 546
Query: 510 LTEKIHRTGLKVVRLCAKSREAMESSVSFLALHEQARA-LGSADSEL-RKLTRLKEE--- 564
+ EK+ GL +VR+ +R + S+V+ +L E + L S +EL RK + L+++
Sbjct: 547 MVEKLLHLGLNIVRVGNPAR--ISSAVASKSLGEIVNSKLASFRAELERKKSDLRKDLRQ 604
Query: 565 --------AG--ELSXXXXXXXXXXXXXXXXXXXXXXXVICTTCVGAGDPRVARMR-FQS 613
AG +L V+ T +GA DP + R+ F
Sbjct: 605 CLRDDVLAAGIRQLLKQLGKTLKKKEKETVKEILSNAQVVFATNIGAADPLIRRLETFDL 664
Query: 614 ILIDEGMQSTEPECMVPVVLGARQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL- 672
++IDE QS EP C +P++ G R IL GD CQL PVV+ +KA + GL SL ER L
Sbjct: 665 VVIDEAGQSIEPSCWIPILQGKR-CILSGDPCQLAPVVLSRKALEGGLGVSLLERAASLH 723
Query: 673 -GIRPFRLEVQYRMHPELSRFPSDFFYEGSLQNGVSAEERRLHKIDFPWPR--------- 722
G+ +L QYRM+ ++ + S Y G L++ S L ID P+ +
Sbjct: 724 DGVLATKLTTQYRMNDVIAGWASKEMYGGWLKSAPSVASHLL--IDSPFVKATWITQCPL 781
Query: 723 ---PDRPMFFYVTQGQEE---IAGSGTSYLNRTEAANVEKLTTRFLKAGVRPEQIGIITP 776
R + ++ G EE AG+G+ Y N EA V + AGV P I + +P
Sbjct: 782 VLLDTRMPYGSLSVGCEERLDPAGTGSLY-NEGEADIVVNHVISLIYAGVSPMAIAVQSP 840
Query: 777 YEGQRSYLVQHMQYQGSLHAKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLSD 836
Y Q L + + + +EVA++D+FQGRE D +I+S VRSN +GFL D
Sbjct: 841 YVAQVQLLRERLD-----DFPVADGVEVATIDSFQGREADAVIISMVRSNNLGAVGFLGD 895
Query: 837 PRRLNVALTRAKYGLIVV 854
RR+NVA+TRA+ + VV
Sbjct: 896 SRRMNVAITRARKHVAVV 913
>At2g03270.1 68415.m00280 DNA-binding protein, putative similar to
Swiss-Prot:Q60560 DNA-binding protein SMUBP-2
(Immunoglobulin MU binding protein 2) (SMUBP-2) (Insulin
II gene enhancer-binding protein)(RIPE3B-binding complex
3B2 P110 subunit) (RIP-1)[Mesocricetus auratus];
identical to putative helicase (atpc-2 gene) cDNA
NCBI_gi:11191230
Length = 639
Score = 184 bits (447), Expect = 4e-46
Identities = 140/447 (31%), Positives = 220/447 (49%), Gaps = 29/447 (6%)
Query: 450 DLNRSQVYAVKHALQ-RPLSLIQGPPGTGKTVTSATIVYQLVRQNGGPVLVCAPSNTAVD 508
+L++SQ A+ AL + + L+ GPPGTGKT T IV Q V++ G +L CA SN AVD
Sbjct: 189 NLDQSQKDAITKALSSKDVFLLHGPPGTGKTTTVVEIVLQEVKR-GSKILACAASNIAVD 247
Query: 509 QLTEKIHRTGLKVVRLCAKSR---EAMESSVSFLALHEQARALGS-ADSELR----KLTR 560
+ E++ +K+VR+ +R + ++S++ L L + E++ KL +
Sbjct: 248 NIVERLVPHKVKLVRVGHPARLLPQVLDSALDAQVLKGDNSGLANDIRKEMKALNGKLLK 307
Query: 561 LKEE------AGELSXXXXXXXXXXXXXXXXXXXXXXXVICTTCVGAGDPRVARMRFQSI 614
K++ EL VI TT GA ++ F +
Sbjct: 308 AKDKNTRRLIQKELRTLGKEERKRQQLAVSDVIKNAD-VILTTLTGALTRKLDNRTFDLV 366
Query: 615 LIDEGMQSTEPECMVPVVLGARQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGI 674
+IDEG Q+ E C + ++ G+R IL GDH QL P + +A + GL ++LFERL L
Sbjct: 367 IIDEGAQALEVACWIALLKGSR-CILAGDHLQLPPTIQSAEAERKGLGRTLFERLADLYG 425
Query: 675 RPFR--LEVQYRMHPELSRFPSDFFYEGSLQNGVSAEERRLHKID--FPWPRPDRPMFFY 730
+ L VQYRMH + + S Y+ + S L ++ + +
Sbjct: 426 DEIKSMLTVQYRMHELIMNWSSKELYDNKITAHSSVASHMLFDLENVTKSSSTEATLLLV 485
Query: 731 VTQG--QEEIAGSGTSYLNRTEAANVEKLTTRFLKAGVRPEQIGIITPYEGQRSYLVQHM 788
T G EE S N EA R +++GV+P IGIITPY Q V +
Sbjct: 486 DTAGCDMEEKKDEEESTYNEGEAEVAMAHAKRLMESGVQPSDIGIITPYAAQ----VMLL 541
Query: 789 QYQGSLHAKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLSDPRRLNVALTRAK 848
+ KL +++E+++VD FQGREK+ II+S VRSN + +GFL D RR+NVA+TR++
Sbjct: 542 RILRGKEEKL-KDMEISTVDGFQGREKEAIIISMVRSNSKKEVGFLKDQRRMNVAVTRSR 600
Query: 849 YGLIVVGNPKVLSKQPLWNHLLAFYKE 875
+V + + +S ++ +++E
Sbjct: 601 RQCCIVCDTETVSSDAFLKRMIEYFEE 627
>At2g19120.1 68415.m02232 tRNA-splicing endonuclease positive
effector-related similar to Endonuclease sen1
(Swiss-Prot:Q92355) [Schizosaccharomyces pombe]; similar
to tRNA-splicing endonuclease positive effector
(Swiss-Prot:Q00416) [Saccharomyces cerevisiae]
Length = 1090
Score = 183 bits (446), Expect = 5e-46
Identities = 129/374 (34%), Positives = 193/374 (51%), Gaps = 21/374 (5%)
Query: 541 LHEQARALGSADSELRKLTRLKEEAGELSXXXXXXXXXXXXXXXXXXXXXXXVICTTCVG 600
L A + + D L +++RL G+ ++ TT
Sbjct: 703 LQHLAAVVEARDKVLVEISRLLIVEGKFRAGNNFNLEEARASLEASFANEAEIVFTTVSS 762
Query: 601 AGDPRVARMR--FQSILIDEGMQSTEPECMVPVVLGARQLILVGDHCQLGPVVMCKKAAK 658
+G +R+ F ++IDE Q++E + P+ LGA + +LVGD QL V+ K A
Sbjct: 763 SGRKLFSRLTHGFDMVVIDEAAQASEVGVLPPLALGAARCVLVGDPQQLPATVISKAAGT 822
Query: 659 AGLSQSLFERLVVLGIRPFRLEVQYRMHPELSRFPSDFFYEGSLQN--GVSAEERRLHKI 716
S+SLFER + G L VQYRMHP++ FPS +FY+G L++ +S+ ++
Sbjct: 823 LLYSRSLFERFQLAGCPTLLLTVQYRMHPQIRDFPSRYFYQGRLKDSESISSAPDEIYYK 882
Query: 717 DFPWPRPDRPMFFYVTQGQEEIAGSGTSYLNRTEA---ANVEKLTTRFLKA-GVRPEQIG 772
D P RP +FF ++ G+E G SY N EA V + LK+ G +G
Sbjct: 883 D-PVLRP--YLFFNISHGRESHRGGSVSYENVDEARFCVGVYMHLQKTLKSLGAGKVSVG 939
Query: 773 IITPYEGQRSYLVQHMQYQGSLHAKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIG 832
+ITPY+ Q L +H ++ +L +EI + +VDAFQG+E+D+IIMSCVR++ H G+G
Sbjct: 940 VITPYKLQLKCL-KH-EFGNALGQDELKEIYINTVDAFQGQERDVIIMSCVRASGH-GVG 996
Query: 833 FLSDPRRLNVALTRAKYGLIVVGNPKVLSKQPLWNHLLAFYKERRVLTEGPLSNLKESAI 892
F+SD RR+NVALTRA+ L V+GN L K W L++ + R E + +
Sbjct: 997 FVSDIRRMNVALTRARRALWVMGNASALMKSEDWAALISDARGRNCFME-----MDSLPL 1051
Query: 893 QFAKPKKLVNSQNP 906
F PK V+S NP
Sbjct: 1052 DFPIPK--VSSYNP 1063
Score = 35.9 bits (79), Expect = 0.14
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 7/51 (13%)
Query: 438 HLPKHFSAPNLPDLNRSQVYA-------VKHALQRPLSLIQGPPGTGKTVT 481
HL + F+AP L ++ + ++ VK P +L+QGPPGTGKT T
Sbjct: 461 HLHRSFNAPQLAAIHWAAMHTAAGTSSGVKKQEPWPFTLVQGPPGTGKTHT 511
>At4g30100.1 68417.m04280 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 1311
Score = 181 bits (440), Expect = 3e-45
Identities = 120/347 (34%), Positives = 176/347 (50%), Gaps = 10/347 (2%)
Query: 541 LHEQARALGSADSELRKLTRLKEEAGELSXXXXXXXXXXXXXXXXXXXXXXXVICTTCVG 600
L + + + D +L +++RL G+ ++ TT
Sbjct: 866 LQRLSAVVEARDKDLVEMSRLLIVEGKFRAGTSFNLEEARASLEASFANEAEIVFTTVSS 925
Query: 601 AGDPRVARMR--FQSILIDEGMQSTEPECMVPVVLGARQLILVGDHCQLGPVVMCKKAAK 658
+G +R+ F ++IDE Q++E + P+ LGA + +LVGD QL V+ K A
Sbjct: 926 SGRKLFSRLTHGFDMVVIDEAAQASEVGVLPPLALGAARCVLVGDPQQLPATVISKAAGT 985
Query: 659 AGLSQSLFERLVVLGIRPFRLEVQYRMHPELSRFPSDFFYEGSLQNGVSAEERRLHKIDF 718
S+SLFER + G L VQYRMHP++ FPS +FY+G L + S +I +
Sbjct: 986 LLYSRSLFERFQLAGCPTLLLTVQYRMHPQIRDFPSRYFYQGRLTDSESVSTAP-DEIYY 1044
Query: 719 PWPRPDRPMFFYVTQGQEEIAGSGTSYLNRTEA---ANVEKLTTRFLKA-GVRPEQIGII 774
+FF ++ G+E G SY N EA V R LK+ G +G+I
Sbjct: 1045 KDSVLKPYLFFDISHGRESHRGGSVSYENIDEARFCVGVYLHLQRTLKSLGGGKVSVGVI 1104
Query: 775 TPYEGQRSYLVQHMQYQGSLHAKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFL 834
TPY+ Q L +++ +L QEI + +VDAFQG+E+D+IIMSCVR++ H G+GF+
Sbjct: 1105 TPYKLQLKCL--KIEFGNALSQDELQEIYINTVDAFQGQERDVIIMSCVRASNH-GVGFV 1161
Query: 835 SDPRRLNVALTRAKYGLIVVGNPKVLSKQPLWNHLLAFYKERRVLTE 881
+D RR+NVALTRAK L V+GN L K W L+ K R E
Sbjct: 1162 ADIRRMNVALTRAKRALWVMGNASALMKCEDWAALITDAKARNCFME 1208
Score = 36.7 bits (81), Expect = 0.080
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 7/54 (12%)
Query: 435 FRVHLPKHFSAPNLPDLNRSQVYA-------VKHALQRPLSLIQGPPGTGKTVT 481
F HL + F+AP L ++ + ++ VK P +L+QGPPGTGKT T
Sbjct: 622 FAGHLHRSFNAPQLAAIHWAAMHTAAGTSSGVKRQDPWPFTLVQGPPGTGKTHT 675
>At4g15570.1 68417.m02379 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 818
Score = 174 bits (424), Expect = 2e-43
Identities = 127/400 (31%), Positives = 195/400 (48%), Gaps = 24/400 (6%)
Query: 497 VLVCAPSNTAVDQLTEKIHRTGLKVVRLCAKSREAMESSVSFLALHEQARALGSADSELR 556
VLVCAPSN+A+D++ ++ +GL+ A++ + A H A L
Sbjct: 377 VLVCAPSNSALDEIVLRLLSSGLRDEN--AQTYTPKIVRIGLKAHHSVASV------SLD 428
Query: 557 KLTRLKEEAGELSXXXXXXXXXXXXXXXXXXXXXXXVICTTCVGAGDPRVARMR--FQSI 614
L K + + ++ T +G +A+ F +
Sbjct: 429 HLVAQKRGSA-IDKPKQGTTGTDIDSIRTAILEEAAIVFATLSFSGSALLAKSNRGFDVV 487
Query: 615 LIDEGMQSTEPECMVPVVLGARQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGI 674
+IDE Q+ EP ++P+ +Q+ LVGD QL V+ A +G S+FERL G
Sbjct: 488 IIDEAAQAVEPATLIPLATRCKQVFLVGDPKQLPATVISTVAQDSGYGTSMFERLQKAGY 547
Query: 675 RPFRLEVQYRMHPELSRFPSDFFYEGSLQNGVSAEERRLHKIDFPWPRPDRPM-FFYVTQ 733
L+ QYRMHPE+ FPS FYEG+L++G E + D+ R P FF + +
Sbjct: 548 PVKMLKTQYRMHPEIRSFPSKQFYEGALEDGSDIEAQTTR--DWHKYRCFGPFCFFDIHE 605
Query: 734 GQE-EIAGSGTSYLNRTEAANV----EKLTTRFLKAGVRPEQIGIITPYEGQRSYLVQHM 788
G+E + G+ S +N E V +L T + + Q+ II+PY Q
Sbjct: 606 GKESQHPGATGSRVNLDEVEFVLLIYHRLVTMYPELK-SSSQLAIISPYNYQVKTFKDRF 664
Query: 789 QYQGSLHAKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLSDPRRLNVALTRAK 848
+ A+ + +++ +VD FQGREKD+ I SCVR+NE+ IGFLS+ RR+NV +TRAK
Sbjct: 665 KEMFGTEAE--KVVDINTVDGFQGREKDVAIFSCVRANENGQIGFLSNSRRMNVGITRAK 722
Query: 849 YGLIVVGNPKVLSKQPLWNHLLAFYKERRVL--TEGPLSN 886
++VVG+ L PLW +L+ ++R L PL+N
Sbjct: 723 SSVLVVGSAATLKSDPLWKNLIESAEQRNRLFKVSKPLNN 762
Score = 37.1 bits (82), Expect = 0.060
Identities = 20/38 (52%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 450 DLNRSQVYAVKHALQRP-LSLIQGPPGTGKTVTSATIV 486
+LN+SQ A+ L R LIQGPPGTGKT T +I+
Sbjct: 257 NLNKSQKEAIDVGLSRKSFVLIQGPPGTGKTQTILSIL 294
>At5g37030.1 68418.m04441 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 638
Score = 168 bits (408), Expect = 2e-41
Identities = 104/270 (38%), Positives = 155/270 (57%), Gaps = 8/270 (2%)
Query: 614 ILIDEGMQSTEPECMVPVVL-GARQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL 672
+++DE Q E E + + L G R IL+GD QL +V + KA +SLFERLV+L
Sbjct: 351 LVVDEAAQLKECESVAALQLPGLRHAILIGDEFQLPAMVHNDQCEKAKFGRSLFERLVLL 410
Query: 673 GIRPFRLEVQYRMHPELSRFPSDFFYEGSLQNGVSAEERRLHKIDFPWPRPDRPMFFYVT 732
G + L+VQYRMHP +SRFP FY G +++ + +E K F V
Sbjct: 411 GHKKHLLDVQYRMHPSISRFPYKEFYGGRIKDAANVQESIYQKRFLQGNMFGSFSFINVG 470
Query: 733 QGQEEIAGSGTSYLNRTEAANVEKLTTRFLKAGVRPE---QIGIITPYEGQRSYLVQHMQ 789
+G+EE G G S N E A V ++ + K + +G+ITPY+GQ + + ++
Sbjct: 471 RGKEEF-GDGDSPKNMVEVAVVSEIISNLFKVSRERKMKMSVGVITPYKGQVRAIQERIR 529
Query: 790 YQ-GSLHAKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLSDPRRLNVALTRAK 848
+ SL +L+ + V SVD FQG E+DIII+S VRSN + +GFLS+ +R NVALTRA+
Sbjct: 530 DKYSSLSGELF-TVNVRSVDGFQGGEEDIIIISTVRSNSNGKVGFLSNRQRANVALTRAR 588
Query: 849 YGLIVVGNPKVLSKQ-PLWNHLLAFYKERR 877
+ L V+GN L++ +W +L++ K R+
Sbjct: 589 HCLWVIGNESTLARSGSIWANLISDSKRRK 618
Score = 30.7 bits (66), Expect = 5.2
Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 4/48 (8%)
Query: 467 LSLIQGPPGTGKTVTSATIVYQLVRQNGGPVLVCAPSNTAVDQLTEKI 514
+ LI GP KT T AT++ L++ V VCAP+NTA+ ++T ++
Sbjct: 227 VKLIWGPL---KTKTVATLLLVLLKLRCKTV-VCAPTNTAIVEVTSRL 270
>At5g52090.1 68418.m06466 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 676
Score = 162 bits (393), Expect = 1e-39
Identities = 104/290 (35%), Positives = 157/290 (54%), Gaps = 7/290 (2%)
Query: 593 VICTTCVGAGDPRVARM-RFQSILIDEGMQSTEPECMVPVVL-GARQLILVGDHCQLGPV 650
+I T GA + V R + +++DE Q E E + + L G R IL+GD QL +
Sbjct: 345 IILCTASGAAEMNVERTGNVELLVVDEAAQLKECESVAALQLPGLRHAILIGDEFQLPAM 404
Query: 651 VMCKKAAKAGLSQSLFERLVVLGIRPFRLEVQYRMHPELSRFPSDFFYEGSLQNGVSAEE 710
V + KA +SLFERLV+LG L+VQYRMHP +SRFP+ FY G +++ + +E
Sbjct: 405 VHNEMCEKAKFGRSLFERLVLLGHNKHLLDVQYRMHPSISRFPNKEFYGGRIKDAENVKE 464
Query: 711 RRLHKIDFPWPRPDRPMFFYVTQGQEEIAGSGTSYLNRTEAANVEKLTTRFLKAGVRPE- 769
K D F V +G+EE G G S N E A + ++ + K
Sbjct: 465 SIYQKRFLKGNMFDSFSFINVGRGKEEF-GDGHSPKNMVEVAVISEIISNLYKVSCERRM 523
Query: 770 --QIGIITPYEGQRSYLVQHMQYQGSLHAKLYQEIEVASVDAFQGREKDIIIMSCVRSNE 827
+G+++PY+GQ + + + + S + + V SVD FQG E+DIII+S VRSN
Sbjct: 524 KVSVGVVSPYKGQMRAIQEKIGDKYSSLSGQQFTLNVRSVDGFQGGEEDIIIISTVRSNG 583
Query: 828 HQGIGFLSDPRRLNVALTRAKYGLIVVGNPKVLS-KQPLWNHLLAFYKER 876
+ +GFL++ +R NVALTRA++ L V+GN L+ +W L++ + R
Sbjct: 584 NGKVGFLNNRQRANVALTRARHCLWVIGNETTLALSGSIWATLISESRTR 633
Score = 47.6 bits (108), Expect = 4e-05
Identities = 23/48 (47%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Query: 467 LSLIQGPPGTGKTVTSATIVYQLVRQNGGPVLVCAPSNTAVDQLTEKI 514
+ LI GPP TGKT T AT+++ L++ V VCAP+NTA+ Q+T ++
Sbjct: 81 VKLIWGPPRTGKTKTVATLLFALLKLRCKTV-VCAPTNTAIVQVTSRL 127
>At1g16800.1 68414.m02018 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 1939
Score = 161 bits (392), Expect = 2e-39
Identities = 108/285 (37%), Positives = 157/285 (55%), Gaps = 23/285 (8%)
Query: 611 FQSILIDEGMQSTEPECMVPV-VLGAR--QLILVGDHCQLGPVVMCKKAAKAGLSQSLFE 667
F +++IDE Q+ EP ++P+ +L +R + I+VGD QL V+ A+K S+FE
Sbjct: 1429 FDAVVIDEAAQALEPATLIPLQLLKSRGTKCIMVGDPKQLPATVLSNVASKFLYECSMFE 1488
Query: 668 RLVVLGIRPFRLEVQYRMHPELSRFPSDFFYEGSLQNGV--SAEERRLHKIDFPWPRPDR 725
RL G L QYRMHPE+ RFPS FY+ L NGV S++ H+ P
Sbjct: 1489 RLQRAGYPILMLTQQYRMHPEICRFPSMHFYDNKLLNGVDMSSKSAPFHENHHLGPY--- 1545
Query: 726 PMFFYVTQGQEEIAGSGTSYLNRTEAANVEKLTTRFLKAGVRPE----QIGIITPYEGQR 781
+F+ + GQE +G +S N EA +L RF K E +IGIITPY +R
Sbjct: 1546 -VFYDIVDGQEHRSGDSSSVCNEQEAEAAVQL-LRFFKKRYPSEFVAGRIGIITPY--KR 1601
Query: 782 SYLVQHMQYQGSLHAKLYQEIEVASVDAFQGREKDIIIMSCVRSN-------EHQGIGFL 834
V ++ G+ A++ ++E+ +VD FQG+E DI+++S VR+ IGF+
Sbjct: 1602 QLAVLRSRFTGAFGAQVTADMEMNTVDGFQGKEVDILVLSTVRATHSAPDGVNQSRIGFV 1661
Query: 835 SDPRRLNVALTRAKYGLIVVGNPKVLSKQPLWNHLLAFYKERRVL 879
+D RR+NVALTRAK L V+GN + L + W L+ KER V+
Sbjct: 1662 ADVRRMNVALTRAKLSLWVLGNTRTLQRDHNWGALVKDAKEREVI 1706
Score = 33.9 bits (74), Expect = 0.56
Identities = 15/24 (62%), Positives = 18/24 (75%)
Query: 467 LSLIQGPPGTGKTVTSATIVYQLV 490
+SLIQGPPGTGKT T I+ L+
Sbjct: 1126 ISLIQGPPGTGKTRTIVAIISGLL 1149
Score = 33.5 bits (73), Expect = 0.74
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 488 QLVRQNG-GPVLVCAPSNTAVDQLTEKIHRTGL 519
++ +NG G VL+CA SN AVD+L +I G+
Sbjct: 1203 KIAEKNGRGRVLICAQSNAAVDELVSRISSLGI 1235
>At5g37150.1 68418.m04460 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 839
Score = 161 bits (390), Expect = 3e-39
Identities = 104/290 (35%), Positives = 156/290 (53%), Gaps = 7/290 (2%)
Query: 593 VICTTCVGAGDPRVARM-RFQSILIDEGMQSTEPECMVPVVL-GARQLILVGDHCQLGPV 650
+I T GA + V R + +++DE Q E E + + L G R IL+GD QL +
Sbjct: 508 IILCTASGAAEMNVERTGNVELLVVDEAAQLKECESVAALQLPGLRHAILIGDEFQLPAM 567
Query: 651 VMCKKAAKAGLSQSLFERLVVLGIRPFRLEVQYRMHPELSRFPSDFFYEGSLQNGVSAEE 710
V + KA +SLFERLV+LG L+VQYRMHP +SRFP+ FY G +++ + +E
Sbjct: 568 VHNEMCEKAKFGRSLFERLVLLGHNKHLLDVQYRMHPSISRFPNKEFYGGRIKDAENVKE 627
Query: 711 RRLHKIDFPWPRPDRPMFFYVTQGQEEIAGSGTSYLNRTEAANVEKLTTRFLKAGVRPE- 769
K F V +G+EE G G S N E A V ++ + K
Sbjct: 628 SIYQKRFLQGNMFGSFSFINVGRGKEEF-GDGHSPKNMVEVAVVSEIISNLFKVSCERRM 686
Query: 770 --QIGIITPYEGQRSYLVQHMQYQGSLHAKLYQEIEVASVDAFQGREKDIIIMSCVRSNE 827
+G+++PY+GQ + + + + S + + V SVD FQG E+DIII+S VRSN
Sbjct: 687 KVSVGVVSPYKGQMRAIQEKIGDKYSSLSGQQFTLNVRSVDGFQGGEEDIIIISTVRSNS 746
Query: 828 HQGIGFLSDPRRLNVALTRAKYGLIVVGNPKVLS-KQPLWNHLLAFYKER 876
+ +GFL++ +R NVALTRA++ L V+GN L+ +W L++ + R
Sbjct: 747 NGKVGFLNNRQRANVALTRARHCLWVIGNETTLALSGSIWATLISESRTR 796
Score = 48.8 bits (111), Expect = 2e-05
Identities = 23/48 (47%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Query: 467 LSLIQGPPGTGKTVTSATIVYQLVRQNGGPVLVCAPSNTAVDQLTEKI 514
+ LI GPPGTGKT T AT+++ L++ V VCAP+NTA+ Q+ ++
Sbjct: 244 VKLIWGPPGTGKTKTVATLLFALLKLRCKTV-VCAPTNTAIVQVASRL 290
>At1g05460.1 68414.m00555 RNA helicase SDE3 (SDE3) identical to RNA
helicase SDE3 [Arabidopsis thaliana] GI:13811296
Length = 1002
Score = 158 bits (383), Expect = 2e-38
Identities = 145/449 (32%), Positives = 204/449 (45%), Gaps = 55/449 (12%)
Query: 446 PNLPDLNRSQVYAVKHALQ---RPLSLIQGPPGTGKTVTSATIVYQLVRQNGGPVLVCAP 502
P P LN Q+ +++ L P +I GPPGTGKT+ T+V +V+
Sbjct: 392 PISPALNAEQICSIEMVLGCKGAPPYVIHGPPGTGKTM---TLVEAIVQL---------- 438
Query: 503 SNTAVDQLTEKIHRTGLKVVRLCAKSREAMESSVSFLALHEQARALGSADSELRKLTRLK 562
T++ R V +CA S A + + L E R + L TR
Sbjct: 439 ------YTTQRNAR-----VLVCAPSNSAADHILEKLLCLEGVRIKDNEIFRLNAATRSY 487
Query: 563 EEAGELSXXXXXXXXXXXXXXXXXXXXXXXVICTTCVGAG---DPRVARMRFQSILIDEG 619
EE ++ +T + A V R F IL+DE
Sbjct: 488 EEIKPEIIRFCFFDELIFKCPPLKALTRYKLVVSTYMSASLLNAEGVNRGHFTHILLDEA 547
Query: 620 MQSTEPECMVPV---VLGARQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL---- 672
Q++EPE M+ V L ++L GD QLGPV+ + A GL +S ERL
Sbjct: 548 GQASEPENMIAVSNLCLTETVVVLAGDPRQLGPVIYSRDAESLGLGKSYLERLFECDYYC 607
Query: 673 -GIRPF--RLEVQYRMHPELSRFPSDFFYEGSLQNGVSAEERRLHKIDFPWPRPDRPMFF 729
G + +L YR HPE+ PS FY+G L + L ++F P + PM F
Sbjct: 608 EGDENYVTKLVKNYRCHPEILDLPSKLFYDGELVASKEDTDSVLASLNF-LPNKEFPMVF 666
Query: 730 YVTQGQEEIAGSGTSYLNRTEAANVEKLTTRFLKAG-VRPEQIGIITPYEGQRSYLVQHM 788
Y QG +E G+ S+ NR E + V + R V+ E IG+ITPY Q M
Sbjct: 667 YGIQGCDEREGNNPSWFNRIEISKVIETIKRLTANDCVQEEDIGVITPYRQQV------M 720
Query: 789 QYQGSLHAKLYQEIEVASVDAFQGREKDIIIMSCVRS----NEHQG---IGFLSDPRRLN 841
+ + L E++V SV+ FQG+EK +II+S VRS NE +GFLS+PRR N
Sbjct: 721 KIKEVLDRLDMTEVKVGSVEQFQGQEKQVIIISTVRSTIKHNEFDRAYCLGFLSNPRRFN 780
Query: 842 VALTRAKYGLIVVGNPKVLSKQPLWNHLL 870
VA+TRA L+++GNP ++ K WN LL
Sbjct: 781 VAITRAISLLVIIGNPHIICKDMNWNKLL 809
>At1g65780.1 68414.m07465 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 1065
Score = 156 bits (378), Expect = 8e-38
Identities = 97/271 (35%), Positives = 144/271 (53%), Gaps = 6/271 (2%)
Query: 612 QSILIDEGMQSTEPECMVPVVL-GARQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLV 670
Q ++IDE Q E E +P+ L G R LILVGD QL +V + A +AG +SLFERL
Sbjct: 565 QLLVIDEAAQLKECESSIPMQLPGLRHLILVGDERQLPAMVESQIALEAGFGRSLFERLA 624
Query: 671 VLGIRPFRLEVQYRMHPELSRFPSDFFYEGSLQNGVSAEERRLHKIDFPWPRPDRPMFFY 730
+LG + + L +QYRMH +S FP+ Y + + + +R K P F
Sbjct: 625 LLGHKKYMLNIQYRMHCSISSFPNKELYGKKILDAPTVRQRNYTKQYLPGEMYGPYSFIN 684
Query: 731 VTQGQEEIA-GSGTSYLNRTEAANVEKLTTRFLKAGVRPE---QIGIITPYEGQRSYLVQ 786
+ G+EE G G S N E V + L+ + + +G+I+PY+ Q + +
Sbjct: 685 IAYGREEYGEGEGRSLKNNVEVVVVAAIIANLLQVSEKTKTRINVGVISPYKAQVIAIQE 744
Query: 787 HMQYQGSLHAKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLSDPRRLNVALTR 846
+Q A + + +VD FQG E+DIII+S VRSN +GFL + RR NV LTR
Sbjct: 745 KIQETSIGDAGGLFSLRIRTVDGFQGGEEDIIIVSTVRSNGVGRVGFLGNRRRTNVLLTR 804
Query: 847 AKYGLIVVGNPKVL-SKQPLWNHLLAFYKER 876
A++ L ++GN L + + +W +L+ KER
Sbjct: 805 ARFCLWILGNEATLMNSKSVWRNLIQDAKER 835
Score = 39.5 bits (88), Expect = 0.011
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 451 LNRSQVYAVKHALQRPLSLIQGPPGTGKTVTSATIVYQLVRQNGGPVLVCAPSNTAVDQL 510
LN V HA + LI GPPGTGKT T++ +++ L+ L C P+N +V ++
Sbjct: 247 LNCLDVRRCYHA--NTVRLIWGPPGTGKTKTTSVLLFTLLNAK-CRTLTCGPTNVSVLEV 303
Query: 511 TEKI 514
++
Sbjct: 304 ASRV 307
>At1g65810.1 68414.m07468 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 1050
Score = 153 bits (371), Expect = 6e-37
Identities = 100/271 (36%), Positives = 148/271 (54%), Gaps = 10/271 (3%)
Query: 612 QSILIDEGMQSTEPECMVPVVL-GARQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLV 670
Q ++IDE Q E E +P+ L G + IL+GD QL ++ A++A L +SLFERLV
Sbjct: 554 QLLVIDEAAQLKECESAIPLQLRGLQHAILIGDEKQLPAMIKSNIASEADLGRSLFERLV 613
Query: 671 VLGIRPFRLEVQYRMHPELSRFPSDFFYEGSLQNGVSAEERRLHKIDFPWPRPDRPMFFY 730
+LG L +QYRMHP +S FP+ FY+ + + S R K P F
Sbjct: 614 LLGHNKQLLNMQYRMHPSISIFPNREFYDMKILDAPSVRLRSYEKKFLPEKMYGPYSFIN 673
Query: 731 VTQGQEEIAGSGTSYLNRTEAANVEKLTTRFL----KAGVRPEQIGIITPYEGQRSYLVQ 786
+ G+E+ G G S N E + V ++ ++ K G R +G+I+PY+ Q + +
Sbjct: 674 IAYGREQF-GEGYSSKNLVEVSVVAEIVSKLYSVSRKTG-RTISVGVISPYKAQVFAIQE 731
Query: 787 HMQYQGSLHAKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLSDPRRLNVALTR 846
+ + + + V SVD FQG E+DIII+S VRSN + IGFLS+ +R NVALTR
Sbjct: 732 RIGEKYNTEGTF--TVSVRSVDGFQGGEEDIIIISTVRSNGNGAIGFLSNQQRTNVALTR 789
Query: 847 AKYGLIVVGNPKVL-SKQPLWNHLLAFYKER 876
A+Y L ++GN L + + +W L+ K R
Sbjct: 790 ARYCLWILGNEATLTNNRSVWRQLVDDAKAR 820
Score = 39.9 bits (89), Expect = 0.009
Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 467 LSLIQGPPGTGKTVTSATIVYQLVRQNGGPVLVCAPSNTAVDQLTEKI 514
+ LI GPPGTGKT T++ ++ ++ L CAP+N AV ++ ++
Sbjct: 290 IKLIWGPPGTGKTKTTSVLLLNFLKMR-CRTLTCAPTNIAVLEVCSRL 336
>At5g37160.1 68418.m04461 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 871
Score = 151 bits (367), Expect = 2e-36
Identities = 97/269 (36%), Positives = 145/269 (53%), Gaps = 7/269 (2%)
Query: 614 ILIDEGMQSTEPECMVPVVL-GARQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL 672
+++DE Q E E + + L G +L+GD QL +V ++ KA +SLFERLV++
Sbjct: 563 LVVDETAQLKECESVAALQLPGLCHALLIGDEYQLPAMVHNEECDKAKFGRSLFERLVLI 622
Query: 673 GIRPFRLEVQYRMHPELSRFPSDFFYEGSLQNGVSAEERRLHKIDFPWPRPDRPMFFYVT 732
G L VQYRMHP +SRFP+ FY G + + + +E K F V
Sbjct: 623 GHSKHLLNVQYRMHPSISRFPNKEFYGGRITDAANVQESIYEKRFLQGNMFGTFSFINVG 682
Query: 733 QGQEEIAGSGTSYLNRTEAANVEKLTTRFLKAGVRPEQ---IGIITPYEGQRSYLVQHM- 788
+G+EE G G S N E A + K+ + K + +Q +G+I+PY+GQ + + +
Sbjct: 683 RGKEEF-GDGHSPKNMVEVAVISKIISNLFKVSSQRKQKMSVGVISPYKGQVRAIQERVG 741
Query: 789 QYQGSLHAKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLSDPRRLNVALTRAK 848
SL + V SVD FQG E D+II+S VR N + +GFLS+ +R NVALTRA+
Sbjct: 742 DKYNSLSVDQLFTLNVQSVDGFQGGEVDVIIISTVRCNVNGNVGFLSNRQRANVALTRAR 801
Query: 849 YGLIVVGNPKVLS-KQPLWNHLLAFYKER 876
+ L V+GN L+ +W L++ + R
Sbjct: 802 HCLWVIGNGTTLALSGSIWAELISESRTR 830
Score = 46.8 bits (106), Expect = 7e-05
Identities = 43/162 (26%), Positives = 75/162 (46%), Gaps = 13/162 (8%)
Query: 385 CTSNFVVDF-----IWKSTSFDRMQLALRKFAL-DDSSVSGYIY---RRLLGHEVEEVLF 435
CT F+++ IW + D L + L +D+S + + + G + + V+
Sbjct: 178 CTGVFLINITTNTRIWNALHKDAADSTLIQSVLQEDASATEQCFSCENDVDGSDSDRVVD 237
Query: 436 RVHLPKHFSAPNLPDLNRSQVYAVKHALQRPLSLIQGPPGTGKTVTSATIVYQLVRQNGG 495
+ K S+ L + KH + + LI GPPGTGKT T AT++ L+ Q
Sbjct: 238 IIRSAKLNSSQEAAILGFLKTRNCKH--KESVKLIWGPPGTGKTKTVATLLSTLM-QLKC 294
Query: 496 PVLVCAPSNTAVDQLTEKIHRTGLKVVRLCAKSREAMESSVS 537
+VCAP+NT + + ++ + + +CA + A+ VS
Sbjct: 295 KTVVCAPTNTTIVAVASRLLSLSKETI-VCAPTNSAIAEVVS 335
>At5g37140.1 68418.m04458 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 692
Score = 151 bits (365), Expect = 3e-36
Identities = 102/274 (37%), Positives = 147/274 (53%), Gaps = 11/274 (4%)
Query: 593 VICTTCVGAGDPRVARMRFQSILI-DEGMQSTEPECMVPVVL-GARQLILVGDHCQLGPV 650
+I T GA D R +L+ DE Q E E + + L G R +L+GD QL +
Sbjct: 366 IIFCTASGAADMNPIRTGSVDLLVVDEAAQLKECESVAALQLSGLRHAVLIGDELQLPAM 425
Query: 651 VMCKKAAKAGLSQSLFERLVVLGIRPFRLEVQYRMHPELSRFPSDFFYEGSLQNGVSAEE 710
V AK G +SLFERLV+LG L VQYRMHP +SRFP+ FY G +++ + +E
Sbjct: 426 V--HNEAKFG--RSLFERLVLLGHNKHLLNVQYRMHPSISRFPNKEFYGGRIKDAANVQE 481
Query: 711 RRLHKIDFPWPRPDRPMFFYVTQGQEEIAGSGTSYLNRTEAANVEKLTTRFLKAGVRPE- 769
K F V +G+EE G G S N E A + ++ + K
Sbjct: 482 SIYQKRFLQGNMFGSFSFINVGRGEEEF-GDGHSPKNMVEVAVISEIISNLFKVSSERRI 540
Query: 770 --QIGIITPYEGQRSYLVQHMQYQGSLHAKLYQEIEVASVDAFQGREKDIIIMSCVRSNE 827
+G+++PY+GQ + + + S + L+ + V SVD FQG E+DIII+S VRSN
Sbjct: 541 KMSVGVVSPYKGQVRAIQERTTNKYSSLSGLFT-LNVRSVDGFQGGEEDIIIISTVRSNG 599
Query: 828 HQGIGFLSDPRRLNVALTRAKYGLIVVGNPKVLS 861
+ +GFL++ +R NVALTRA++ L V+GN L+
Sbjct: 600 NGKVGFLNNRQRANVALTRARHCLWVIGNETTLA 633
Score = 49.2 bits (112), Expect = 1e-05
Identities = 23/48 (47%), Positives = 36/48 (75%), Gaps = 1/48 (2%)
Query: 467 LSLIQGPPGTGKTVTSATIVYQLVRQNGGPVLVCAPSNTAVDQLTEKI 514
+ LI GPPGTGKT T AT+++ L++ + V VCAP+NTA+ ++T ++
Sbjct: 97 VKLIWGPPGTGKTKTVATLLFCLLKLSCKTV-VCAPTNTAIVEVTSRL 143
>At4g05540.1 68417.m00843 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 689
Score = 151 bits (365), Expect = 3e-36
Identities = 101/274 (36%), Positives = 143/274 (52%), Gaps = 6/274 (2%)
Query: 593 VICTTCVGAGDPRVARM-RFQSILIDEGMQSTEPECMVPVVL-GARQLILVGDHCQLGPV 650
+I T GA + R +++DE Q E E + + L G +L+GD QL +
Sbjct: 412 IIFCTASGAAEMTAERAGSIDMLVVDEAAQLKECESVAALQLQGLHHAVLIGDELQLPAM 471
Query: 651 VMCKKAAKAGLSQSLFERLVVLGIRPFRLEVQYRMHPELSRFPSDFFYEGSLQNGVSAEE 710
V + KA +SLFERL LG + L VQYRMHP +S FP+ FY G + + +E
Sbjct: 472 VQSEVCEKAKFVRSLFERLDSLGHKKHLLNVQYRMHPSISLFPNMEFYGGKISDAEIVKE 531
Query: 711 RRLHKIDFPWPRPDRPMFFYVTQGQEEIAGSGTSYLNRTEAANVEKLTTRFLKAGVRPE- 769
K F V G+EE G G S N E A V ++ T LK +
Sbjct: 532 STYQKRFLQGNMFGSFSFINVGLGKEEF-GDGHSPKNMVEIAVVSEILTNLLKVSSETKT 590
Query: 770 --QIGIITPYEGQRSYLVQHMQYQGSLHAKLYQEIEVASVDAFQGREKDIIIMSCVRSNE 827
+G+I+PY+ Q S + + + + + + + V SVD FQG E+DIII+S VRSN
Sbjct: 591 KMSVGVISPYKAQVSAIQERIGDKYTSVSDNLFTLNVRSVDGFQGGEEDIIIISTVRSNC 650
Query: 828 HQGIGFLSDPRRLNVALTRAKYGLIVVGNPKVLS 861
+ IGFLS+ +R NVALTRA++ L V+GN + LS
Sbjct: 651 NGNIGFLSNRQRANVALTRARHCLWVIGNERTLS 684
Score = 42.3 bits (95), Expect = 0.002
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 467 LSLIQGPPGTGKTVTSATIVYQLVRQNGGPVLVCAPSNTAVDQLTEKI 514
+ LI GPPGTG T T AT+++ L+ + V VC P+NTAV + ++
Sbjct: 132 VKLIWGPPGTGNTKTVATLLFALLSLSCKTV-VCTPTNTAVVAVASRL 178
>At1g08840.1 68414.m00984 DNA replication helicase, putative similar
to helicase [Xenopus laevis] gi|18845092|gb|AAL79550
Length = 1296
Score = 125 bits (301), Expect = 2e-28
Identities = 101/299 (33%), Positives = 144/299 (48%), Gaps = 26/299 (8%)
Query: 593 VICTTCVGAGDPRVARMRFQSILIDEGMQSTEPECMVPVVLGARQLILVGDHCQLGPVVM 652
V+ +TC+G P + RF +IDE Q P + P++ A +LVGDH QL P+V
Sbjct: 996 VVASTCLGINSPLLVNRRFDVCIIDEAGQIALPVSIGPLLF-ASTFVLVGDHYQLPPLVQ 1054
Query: 653 CKKAAKAGLSQSLFERLVVLGIRPFR-LEVQYRMHPELSRFPSDFFYEGSLQNGVSAEER 711
+A + G+ SLF RL + L+ QYRM + + Y L G SAE
Sbjct: 1055 STEARENGMGISLFRRLSEAHPQAISVLQNQYRMCRGIMELSNALIYGDRLCCG-SAEVA 1113
Query: 712 RLHKI------DFPWPR----PDRPMFFYVTQGQEEIAGSGTSYLNR-TEAANVEKLTTR 760
+ PW + P R + F T + +N EA+ + ++
Sbjct: 1114 DATLVLSTSSSTSPWLKKVLEPTRTVVFVNTDMLRAFEARDQNAINNPVEASIIAEIVEE 1173
Query: 761 FLKAGVRPEQIGIITPYEGQRSYLVQHMQYQGSLHAKLYQEIEVASVDAFQGREKDIIIM 820
+ GV + IGIITPY Q S L+QH A +E+ ++D +QGR+KD I++
Sbjct: 1174 LVNNGVDSKDIGIITPYNSQAS-LIQH--------AIPTTPVEIHTIDKYQGRDKDCILV 1224
Query: 821 SCVRSNEH---QGIGFLSDPRRLNVALTRAKYGLIVVGNPKVLSKQPLWNHLLAFYKER 876
S VRS E L D R+NVALTRAK LI+VG+ + LS+ PL LL KE+
Sbjct: 1225 SFVRSREKPRSSASSLLGDWHRINVALTRAKKKLIMVGSQRTLSRVPLLMLLLNKVKEQ 1283
Score = 42.7 bits (96), Expect = 0.001
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 451 LNRSQVYAVKHALQ-RPLSLIQGPPGTGKTVTSATIVYQLVRQNGGPVLVCAPSNTAVDQ 509
LN Q A+ L + +LI G PGTGKT T V L+ + G +L+ + +N+AVD
Sbjct: 888 LNNDQRQAILKILTAKDYALILGMPGTGKTSTMVHAVKALLIR-GSSILLASYTNSAVDN 946
Query: 510 LTEKIHRTGLKVVRL 524
L K+ G++ +R+
Sbjct: 947 LLIKLKAQGIEFLRI 961
>At2g38770.1 68415.m04760 expressed protein
Length = 1509
Score = 86.6 bits (205), Expect = 8e-17
Identities = 75/256 (29%), Positives = 124/256 (48%), Gaps = 19/256 (7%)
Query: 610 RFQSILIDEGMQSTEPECMVPVVLGARQ--------LILVGDHCQLGPVVMCKKAAK-AG 660
++ ++L++E Q E E +P++L ++ IL+GDH QL PVV K +
Sbjct: 1116 KYDNLLMEESAQILEIETFIPMLLQRQEDGHARLKRCILIGDHHQLPPVVKNMAFQKYSH 1175
Query: 661 LSQSLFERLVVLGIRPFRLEVQYRMHPELSRFPSDFFYE-GSLQNGVSAE--ERRLHKID 717
+ QSLF R V LGI L Q R P L++ + + + G L A +R
Sbjct: 1176 MDQSLFTRFVRLGIPYIELNAQGRARPSLAKLYNWRYRDLGDLSIVKEAPIFQRANAGFS 1235
Query: 718 FPWPRPDRPMFFYVTQGQEEIAGSGTSYLNRTEAANVEKLTTRFLKAGVRPEQIGIITPY 777
+ + + P + +G+ E S Y N+ EA + + G +I I+T Y
Sbjct: 1236 YEYQLVNVPDY----EGRGESTPSPWFYQNQGEAEYIVSVYIYMRLLGYPANKISILTTY 1291
Query: 778 EGQRSYLVQHMQYQGSLHAKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLSDP 837
GQ+ + + + + + +V +VD FQG++ D I++S VR+ + +G L D
Sbjct: 1292 NGQKLLIRDVINRRCVPYPFIGPPSKVTTVDKFQGQQNDFILLSLVRT---RFVGHLRDV 1348
Query: 838 RRLNVALTRAKYGLIV 853
RRL VA++RA+ GL V
Sbjct: 1349 RRLVVAMSRARLGLYV 1364
Score = 41.1 bits (92), Expect = 0.004
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 454 SQVYAVKHALQRPLSLIQGPPGTGKTVTSATIVYQLVRQ-NGGPVLVCAPSNTAVDQLTE 512
+QV A+ +Q L+++ GPPGTGKT T+ I+ L L+ SN A++ L E
Sbjct: 869 TQVGAIISGIQPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFE 928
Query: 513 KI 514
KI
Sbjct: 929 KI 930
>At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly
identical to auxin transport protein; BIG [Arabidopsis
thaliana] GI:21779966; contains Pfam profiles PF02207:
Putative zinc finger in N-recognin, PF00569: Zinc finger
ZZ type
Length = 5098
Score = 34.7 bits (76), Expect = 0.32
Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 388 NFVVDFIWKSTSFDRMQLALRKFA-LDDSSVSGYIYRRLLGHEVEEV 433
NF+VD + + S D + +KF +D S+SG++ RRLLG VEE+
Sbjct: 1321 NFLVDLLSVAQSPDLRRRVQQKFIDMDLISLSGWLERRLLGSFVEEI 1367
>At1g21690.2 68414.m02715 replication factor C 37 kDa, putative
Similar to SWISS-PROT:P35249 activator 1 37 kDa subunit
(Replication factor C 37 kDa subunit, A1 37 kDa subunit,
RF-C 37 kDa subunit, RFC37) [Homo sapiens]; contains
Pfam domain, PF00004: ATPase, AAA family
Length = 327
Score = 34.3 bits (75), Expect = 0.43
Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 444 SAPNLPDLNRSQVYAVKHALQR-PLSLIQGPPGTGKTVTSATIVYQL 489
S P + QV V H + P L GPPGTGKT T+ I +QL
Sbjct: 8 SQPWVEKYRPKQVKDVAHQEEVCPHMLFYGPPGTGKTTTALAIAHQL 54
>At1g21690.1 68414.m02714 replication factor C 37 kDa, putative
Similar to SWISS-PROT:P35249 activator 1 37 kDa subunit
(Replication factor C 37 kDa subunit, A1 37 kDa subunit,
RF-C 37 kDa subunit, RFC37) [Homo sapiens]; contains
Pfam domain, PF00004: ATPase, AAA family
Length = 339
Score = 33.5 bits (73), Expect = 0.74
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 466 PLSLIQGPPGTGKTVTSATIVYQL 489
P L GPPGTGKT T+ I +QL
Sbjct: 43 PHMLFYGPPGTGKTTTALAIAHQL 66
>At1g32585.1 68414.m04021 VQ motif-containing protein-related
contains weak similarity to Pfma:PF05678 VQ motif
Length = 220
Score = 33.1 bits (72), Expect = 0.98
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 692 FPSDFFYEGSLQNGVSAEERRLHKIDFPWPRPDRPMFFYVTQGQEEIAGS 741
FPS +F GS Q A + ++D+ +P P P F + + Q E+ GS
Sbjct: 154 FPSSWF-NGSTQEMHGASSLQSTRVDYEYPLPLTPNFTFSSMTQHEVFGS 202
>At4g16610.1 68417.m02512 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 204
Score = 32.3 bits (70), Expect = 1.7
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Query: 117 CNICNKWFCNGRGNTSGSHIINHLVRAK 144
C +C+K FCNGR G H+ +HLV ++
Sbjct: 7 CKLCSKSFCNGR--ALGGHMKSHLVSSQ 32
>At3g62850.1 68416.m07061 zinc finger protein-related contains Pfam
profiles PF04396: Protein of unknown function DUF537,
weak hit to PF00096: Zinc finger, C2H2 type
Length = 472
Score = 31.5 bits (68), Expect = 3.0
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 645 CQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPFRLEVQYRMHPEL 689
C++ P+ CK + G S F R V G + EV R+HPEL
Sbjct: 175 CEVSPMFYCKSCSYQGQSVEGFRRHVSSGKHAVK-EVTNRIHPEL 218
>At1g63160.1 68414.m07138 replication factor C 40 kDa, putative
similar to SWISS-PROT:Q9WUK4 activator 1 40 kDa subunit
(Replication factor C 40 kDa subunit, A1 40 kDa subunit,
RF-C 40 kDa subunit, RFC40) [Mus musculus]
Length = 333
Score = 31.5 bits (68), Expect = 3.0
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 466 PLSLIQGPPGTGKTVTSATIVYQLVRQNGGPVL--VCAPSNTAVDQLTEKIHRTGLKVVR 523
P ++ GPPGTGKT + + ++L+ N + + A + +D + KI K V
Sbjct: 49 PNLILSGPPGTGKTTSILALAHELLGTNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVT 108
Query: 524 L 524
L
Sbjct: 109 L 109
>At3g42790.1 68416.m04474 PHD finger family protein contains
PHD-finger domain, INTERPRO:IPR001965
Length = 250
Score = 31.1 bits (67), Expect = 4.0
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 9/75 (12%)
Query: 56 SSSNQVNGIGRIELSSKI-SNVTNTIPELQFEEEDEALYSNKELPDHA---CKYCGIHDP 111
S++NQ NG + + +SK+ ++ + Q +EEDE + + E DH C CG D
Sbjct: 149 SAANQ-NG-NKSKSNSKVRTSEGKSSKTKQPKEEDEEIDEDDE-DDHGETLCGACGDSDG 205
Query: 112 ATV--VMCNICNKWF 124
A + C++C KWF
Sbjct: 206 ADEFWICCDLCEKWF 220
>At2g02480.1 68415.m00187 DNA polymerase-related weak similarity to
DNA polymerase III holoenzyme tau subunit [Thermus
thermophilus] GI:2583049
Length = 1218
Score = 31.1 bits (67), Expect = 4.0
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 453 RSQVYAVKHALQRPLSLIQGPPGTGKTVTS 482
+S + AVK + P+ L QGP GTGKT T+
Sbjct: 471 QSLMNAVKRSRIAPVYLFQGPRGTGKTSTA 500
>At2g02470.1 68415.m00186 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 256
Score = 31.1 bits (67), Expect = 4.0
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 68 ELSSKISNVTNTIPELQFEEEDEALYSNKELPDHA-CKYCGIH--DPATVVMCNICNKWF 124
E SK++ +++ P+ + EEEDE+ +++ A C CG + + C+ C KWF
Sbjct: 167 ESLSKVAKMSSPPPKEEEEEEDESEDESEDDEQGAVCGACGDNYGTDEFWICCDACEKWF 226
>At1g35530.1 68414.m04411 DEAD/DEAH box helicase, putative low
similarity to RNA helicase/RNAseIII CAF protein
[Arabidopsis thaliana] GI:6102610; contains Pfam
profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1324
Score = 31.1 bits (67), Expect = 4.0
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 468 SLIQGPPGTGKTVTSATIVYQLVRQ-NGGPVLVCAPSNTAVDQLTEKIH 515
+L+ P G GKT+ +A ++Y R G ++ APS V Q E H
Sbjct: 131 TLVALPTGLGKTLIAAVVMYNYFRWFPQGKIVFAAPSRPLVMQQIEACH 179
>At1g19870.1 68414.m02492 calmodulin-binding family protein contains
Pfam profile: PF00612 IQ calmodulin-binding motif
Length = 794
Score = 30.7 bits (66), Expect = 5.2
Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 4/97 (4%)
Query: 2 SVEAFDPSSQSLTFLETEEGDFIGADTQGSEFEFTDFTLPSQSQTQASQHDHGLSSSNQV 61
S EA Q++ ETE+ + +E + QSQ A++ D L V
Sbjct: 391 SYEASKVEGQNVELSETEKMSQYDSPEASAEVYYDSI----QSQPLAAKPDSLLEEPEYV 446
Query: 62 NGIGRIELSSKISNVTNTIPELQFEEEDEALYSNKEL 98
+G + L K+SN + + +FEE + SNK +
Sbjct: 447 DGQIKHSLKRKVSNPSFIAAQSKFEELTSSTGSNKAM 483
>At1g06720.1 68414.m00714 expressed protein contains Pfam domain,
PF04950: Protein of unknown function (DUF663)
Length = 1147
Score = 30.3 bits (65), Expect = 6.9
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 469 LIQGPPGTGKTVTSATIVYQLVRQN 493
++QGPPG GK++ ++V + +QN
Sbjct: 87 VVQGPPGVGKSLVIKSLVKEFTKQN 111
>At4g08113.1 68417.m01331 myosin heavy chain-related similar to
Myosin heavy chain, skeletal muscle, extraocular
(MyHC-eo) (SP:Q9UKX3) {Homo sapiens}
Length = 764
Score = 29.9 bits (64), Expect = 9.2
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 875 ERRVLTEGPLSNLKESAIQFAKP-KKLVNSQNPGSHFMSTSMFDA-REAMVPGSIY-DRA 931
+RR LT G + ++ + + KP KK V Q G+ M+ + D R VP ++
Sbjct: 34 QRRALTLGGMGLIRPPSTRADKPKKKKVAKQGGGTPMMNNDLVDLWRRCQVPVEVHMILP 93
Query: 932 RPPRDP 937
RPP P
Sbjct: 94 RPPLHP 99
>At3g56510.1 68416.m06284 TBP-binding protein, putative similar to
TBP-binding protein ABT1 GI:6518527 from [Mus musculus]
Length = 257
Score = 29.9 bits (64), Expect = 9.2
Identities = 16/60 (26%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 508 DQLTEKI-HRTGLKVVRLCAKSREAMESSVSFLALHEQARALGSADSELRKLTRLKEEAG 566
D LTE+I +++ ++ +L A +L+ E++RA+ D+ + K +++EE+G
Sbjct: 152 DDLTEEIAYKSAIREQKLNMVLSAAKREKDFYLSKIEKSRAMTEIDARMEKKRKIQEESG 211
>At2g21720.1 68415.m02584 hypothetical protein contains Pfam
profile: PF04842 plant protein of unknown function
(DUF639)
Length = 703
Score = 29.9 bits (64), Expect = 9.2
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 190 RQPCAAQSSLKDMNWDQ--EQWKPLISDRAFLSWLVKVPSETEQMRARQVTPQQIGRLEE 247
R PC+A S L++MN DQ + K D +VKV + E + + + Q R E
Sbjct: 459 RNPCSASSILRNMNMDQLGDMIKEEGED-ICKEKVVKVTDKEEMLASLESAVNQ-SREEG 516
Query: 248 LWRDNVDATFQDLEKPGVDE 267
+ AT +LE+ G+ E
Sbjct: 517 KVIEKARATTAELEEEGISE 536
>At1g43870.1 68414.m05054 hypothetical protein similar to fructose
binding protein FrcB (GI:11066207)[Sinorhizobium
meliloti]
Length = 295
Score = 29.9 bits (64), Expect = 9.2
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 875 ERRVLTEGPLSNLKESAIQFAKP-KKLVNSQNPGSHFMSTSMFD-AREAMVPGSIY-DRA 931
+RRV+T G + ++ S+ + KP KK Q G+ +++ + D R VP ++
Sbjct: 34 QRRVITLGGMDPIRMSSTRADKPKKKKAAKQGGGTPMINSDLVDLRRRCQVPVEVHMILL 93
Query: 932 RPPRDP 937
RPP P
Sbjct: 94 RPPLHP 99
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.319 0.135 0.402
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,477,940
Number of Sequences: 28952
Number of extensions: 991424
Number of successful extensions: 2625
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 2507
Number of HSP's gapped (non-prelim): 70
length of query: 1032
length of database: 12,070,560
effective HSP length: 88
effective length of query: 944
effective length of database: 9,522,784
effective search space: 8989508096
effective search space used: 8989508096
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 64 (29.9 bits)
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