GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001538-TA|BGIBMGA001538-PA|IPR006849|IKI3
         (590 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory recept...    25   1.1  
AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory recept...    25   1.1  
DQ494421-1|ABF55372.1|   73|Tribolium castaneum telomerase rever...    23   7.8  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    23   7.8  

>AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory receptor
           candidate 45 protein.
          Length = 379

 Score = 25.4 bits (53), Expect = 1.1
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 10  LAIVTKEMHMVLLSCTYDPINEIKLHNQEFGEK 42
           L ++T +  + LL+C     N +K  N+EF EK
Sbjct: 243 LILITGKSIVQLLTCLNFITNNLKSENEEFKEK 275


>AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory receptor
           candidate 8 protein.
          Length = 379

 Score = 25.4 bits (53), Expect = 1.1
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 10  LAIVTKEMHMVLLSCTYDPINEIKLHNQEFGEK 42
           L ++T +  + LL+C     N +K  N+EF EK
Sbjct: 243 LILITGKSIVQLLTCLNFITNNLKSENEEFKEK 275


>DQ494421-1|ABF55372.1|   73|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 73

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 16/47 (34%), Positives = 19/47 (40%)

Query: 310 APKNENVNPNSFFVITVDNKLLFYSQKEKHPLNYEAYNSQQFDKSDF 356
           APK  N   NS   I + N  L    K K P+   A   +   KS F
Sbjct: 15  APKIVNSKYNSILNIALKNFRLCKKHKTKKPVQILALLQEIIPKSYF 61


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 16/47 (34%), Positives = 19/47 (40%)

Query: 310 APKNENVNPNSFFVITVDNKLLFYSQKEKHPLNYEAYNSQQFDKSDF 356
           APK  N   NS   I + N  L    K K P+   A   +   KS F
Sbjct: 15  APKIVNSKYNSILNIALKNFRLCKKHKTKKPVQILALLQEIIPKSYF 61


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.134    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,167
Number of Sequences: 317
Number of extensions: 6283
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 6
length of query: 590
length of database: 114,650
effective HSP length: 61
effective length of query: 529
effective length of database: 95,313
effective search space: 50420577
effective search space used: 50420577
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 46 (22.6 bits)