Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001538-TA|BGIBMGA001538-PA|IPR006849|IKI3
(590 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 134 3e-32
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ... 29 1.8
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 29 2.4
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ... 29 2.4
SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c... 28 3.2
SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit Cut9|... 28 3.2
SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase |Sch... 27 5.5
SPCC63.06 |||human WDR89 family WD repeat protein|Schizosaccharo... 27 7.3
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ... 27 9.6
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 134 bits (324), Expect = 3e-32
Identities = 94/315 (29%), Positives = 154/315 (48%), Gaps = 29/315 (9%)
Query: 3 WSPDQELLAIVTKEMHMVLLSCTYDPINEIKLHNQEFGE-KQFITVGWGKKETQFHGSEG 61
WS D+++ I+T ++ ++ +D I+E L + + E + I+VGWG+ ETQF G
Sbjct: 126 WSTDEQVFCIITGGDTILFMTKNFDIISETSLSDADLNEFNKHISVGWGRSETQFRGKRV 185
Query: 62 KQAAKIKNDIVS---DDSTASD----KVKITWRGDGNLYAIGFAMDGLRH-FKVFDREGH 113
+ AK+++ + D+ SD K I WRGD +I G R +V+ REG
Sbjct: 186 R--AKLRDPTLPEKIDEGKLSDVDDGKTYICWRGDSQYVSINRLEKGPRRAIRVYSREGL 243
Query: 114 LLYTSEKQKGLEDNIVWRPSGNVITT--TQKIENQYKVTFFEKNGLKHREFSIPVEHGTY 171
L SE Q G + + W+PSG+V+ T + +N KV FFE+NGL+H EFS+
Sbjct: 244 LDSISEPQDGQQSLLSWKPSGSVLATIKSDSSDNSSKVIFFERNGLRHGEFSLRRREDEK 303
Query: 172 VENIMWSSDSEILTLQCKDTETNTQKVLLYTTSNYHWYLKQTLLFRSNQRINKIIWDNDF 231
+ W+ S IL + +++ V+L+TT NYHWYLK+ + N I+ W +
Sbjct: 304 YTGLAWNVSSSILAVSTENS------VMLWTTGNYHWYLKKEINIPQNALIS---WHPE- 353
Query: 232 DISNNKKMHIILQNG-SYLIYSWIWNIDHSKSXXXXXXXXXXXXXGDKLLITGFRQTVVP 290
+ ++I +N +++ + + S S G LL+T +P
Sbjct: 354 ---HANTLYITGKNHIEKVVFDLKYVTEFSTS--PNDFGLIPVIDGSSLLVTPLSLCNIP 408
Query: 291 PPMASLEIKLESTAQ 305
PPM ++ L+ Q
Sbjct: 409 PPMCRYKLSLDYNVQ 423
Score = 41.5 bits (93), Expect = 3e-04
Identities = 30/126 (23%), Positives = 52/126 (41%), Gaps = 2/126 (1%)
Query: 450 LYQEALKHXXXXXXXXXXXXXDYGQHLKLKKYYTEAAIIYERANNNDKAIECYKEALEWE 509
LY AL+ + Q+L+ EAAI YE +AIE YK A W
Sbjct: 914 LYPRALELYKYDKEAQKEVLIIFAQYLRENGKSNEAAIAYESVGKISEAIEAYKSAGMWR 973
Query: 510 LAIKLAYFWPKAQ--FKVLCWELVTALKEEKRHEEALIILEQFYGDPEECISYAVETSHY 567
+ + ++ + +L + E++ H +A I + +P E + + S Y
Sbjct: 974 ECLSILQQTTNSEDLIRETAEDLASLCIEKREHCDAGSINLLYLSNPREAVIQMCKGSQY 1033
Query: 568 KKALRL 573
+A+R+
Sbjct: 1034 SEAIRI 1039
>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1237
Score = 29.1 bits (62), Expect = 1.8
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 548 EQFYGDPEECISYAVETSHYKKALRLCSLYDK 579
+ FY + E +ET HYK+ LR+ YDK
Sbjct: 1090 DYFYANGEGVKLPVLETDHYKELLRVQEYYDK 1121
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 28.7 bits (61), Expect = 2.4
Identities = 29/126 (23%), Positives = 51/126 (40%), Gaps = 10/126 (7%)
Query: 134 GNVITTTQKIENQYKVTFFEKNGLKHREFSIPVEHGTYVENIMWSSDSEILTLQCKDTET 193
G + T N + V + L + F P H + E ++ + TL+ D E
Sbjct: 1648 GEIEYTNASKRNYFGVPEDCHDSLSWKTFIHPDHHHQFQEKLL-----NLKTLELGDIEL 1702
Query: 194 NTQKVLLYTTSNYHWYLKQTLLFRSNQRINKIIWDNDFDISNNKKMHIILQNGSYLIYSW 253
+L NYHW+L + L F+ + K I DI++ K+ + L ++
Sbjct: 1703 ----LLRMEDGNYHWHLCRGLSFKEDANAKKWI-VVCIDINDEKEAREAAMHAVNLKTNF 1757
Query: 254 IWNIDH 259
+ N+ H
Sbjct: 1758 LANMSH 1763
>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 28.7 bits (61), Expect = 2.4
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 289 VPPPMASL--EIKLESTAQAICFAPKNENVNPNSFFVITVDNKLLFYSQKEKHPLNYEAY 346
V P + L E+KL++ A APK +N+N + V N + S+K K+ +N
Sbjct: 586 VRPELVQLFYEMKLQAFVNANHNAPKKKNLNDSLKSVELEGNGIKLSSEKGKNNVNKVRN 645
Query: 347 NSQQFD 352
++ +FD
Sbjct: 646 DNARFD 651
>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 801
Score = 28.3 bits (60), Expect = 3.2
Identities = 31/154 (20%), Positives = 65/154 (42%), Gaps = 6/154 (3%)
Query: 36 NQEFGEKQFITVGWGKKETQFHGSEGKQAAKIKNDIVSDDSTASDKVKITWRGDGNLYAI 95
++EF +Q ++ ++E S+ + + +D +DD S K + +L A+
Sbjct: 382 DEEFARQQLLSRKEEEEEEDEEASDFEDSFADFSDGEADDLDESRWRKEAAKEHNSLLAV 441
Query: 96 GFAMDGLRHFKVFDRE-GHLLYTSEKQKGLED--NIVWRPSGNVITTTQ-KIENQYKVTF 151
G+ D R + V + + G + EK + N + P G + ++ + NQ
Sbjct: 442 GYKND--RSYVVRNNKIGVFKHVDEKGLKFQTALNNLSTPKGKSLRPSKLMLHNQDSSIL 499
Query: 152 FEKNGLKHREFSIPVEHGTYVENIMWSSDSEILT 185
F+ H + + +E+G V+ D ++T
Sbjct: 500 FQTENAPHSLYHMDIEYGKIVDEWKVHDDVPLVT 533
>SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit
Cut9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 671
Score = 28.3 bits (60), Expect = 3.2
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 488 IYERANNNDKAIECYKEAL 506
+Y +N D+A ECYKEAL
Sbjct: 209 VYTNLSNFDRAKECYKEAL 227
>SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 365
Score = 27.5 bits (58), Expect = 5.5
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 163 SIPVEHGTYVENIMWSSDSEILTLQCKDTE--TNTQKVLLYTTSNYHWYLKQTLLFRSNQ 220
S+P+E + +++ SS ++L D++ T V +Y T + T L R N
Sbjct: 142 SVPLEIYSTPVSVL-SSQIDLLRRFATDSDGLTPFTDVFIYNTEKPETLISGTTLLRLNP 200
Query: 221 RINKIIWDNDFDISNNK 237
N I D D+D+ K
Sbjct: 201 EKNIIYIDGDWDLFTEK 217
>SPCC63.06 |||human WDR89 family WD repeat
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 331
Score = 27.1 bits (57), Expect = 7.3
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 170 TYVENIMWSSDSEILTLQCKDTETNTQKVLLYTTSNYHWYLKQTLLFRSNQRINKIIWDN 229
+YV N + +SD + L D + K +L TS + T L R+++ I + I
Sbjct: 252 SYVINEVSTSDKQFCALAFGDFSNHETKFVLVDTSTGELKKEPTKLERASEEICRAI--- 308
Query: 230 DFDISNN 236
FD+ N+
Sbjct: 309 SFDVKND 315
>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 668
Score = 26.6 bits (56), Expect = 9.6
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 9/67 (13%)
Query: 370 TIVCAMTDEKSTSVIELTMVNDKLVKSNSVHVRG-------VVTQIQAHPTNKSLLFLQF 422
+I+ T KS+SVI T + D +K NS+ +VT+ AH +NK+ LF+
Sbjct: 599 SILVQATPRKSSSVI--TELPDTPIKMNSLDKASACTVENHIVTESPAHKSNKAQLFVCV 656
Query: 423 ITGHIHK 429
T + K
Sbjct: 657 PTTPVKK 663
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.319 0.134 0.408
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,824,345
Number of Sequences: 5004
Number of extensions: 122380
Number of successful extensions: 307
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 295
Number of HSP's gapped (non-prelim): 13
length of query: 590
length of database: 2,362,478
effective HSP length: 77
effective length of query: 513
effective length of database: 1,977,170
effective search space: 1014288210
effective search space used: 1014288210
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)
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