Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001538-TA|BGIBMGA001538-PA|IPR006849|IKI3
(590 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0909 + 22512313-22512474,22513151-22513465,22513539-225166... 90 4e-18
04_04_0253 - 23944279-23944358,23944634-23944711,23945118-239452... 32 1.1
07_03_0011 + 12370624-12370684,12372573-12372718,12372793-123731... 32 1.5
01_07_0336 - 42833205-42834926 31 2.6
11_04_0364 - 16791774-16792490,16792545-16793561,16793856-167939... 31 3.4
09_04_0308 + 16567361-16568854,16568946-16569068,16569372-165696... 31 3.4
05_06_0102 - 25589011-25589181,25589269-25589496,25589589-255899... 31 3.4
11_06_0148 + 20631949-20632338,20632838-20633044,20633168-206332... 30 4.5
04_01_0158 - 1801724-1801951,1802047-1803078 29 7.9
>07_03_0909 +
22512313-22512474,22513151-22513465,22513539-22516633,
22516812-22516910,22517031-22517379
Length = 1339
Score = 90.2 bits (214), Expect = 4e-18
Identities = 78/345 (22%), Positives = 151/345 (43%), Gaps = 36/345 (10%)
Query: 70 DIVSDDSTASDKVK--ITWRGDGNLYAIGFAMDGL-RHFKVFDREGHLLYTSEKQKG-LE 125
D+ D ++ + ++ I+WRGDG +A ++G + +++RE +++S K +
Sbjct: 161 DLTGDINSPNGHIQSSISWRGDGKFFATLGGLEGSSQKLTIWERESGNIHSSSDTKAFIG 220
Query: 126 DNIVWRPSGNVITTTQKIENQYK---VTFFEKNGLKHREFSIPVEHGTYVENIMWSSDSE 182
++ W PSG + T + + K + F+EKNGL+ FSI ++ + W+ +SE
Sbjct: 221 ASLDWMPSGAKVATAHDRKTEGKCPLIVFYEKNGLERSHFSIDEPAEAVIQALKWNCNSE 280
Query: 183 ILTLQCKDTETNTQKVLLYTTSNYHWYLKQTLLFRSNQRINKIIWDNDFDISNNKKMHII 242
+L + + KV ++ SN HWYLKQ L + + + + WD K MH+I
Sbjct: 281 LLAALVSCGQYDVIKV--WSCSNNHWYLKQELRYTKKEGV-RFYWD------QTKPMHLI 331
Query: 243 --LQNGSYLIYSWIWNIDHSKSXXXXXXXXXXXXXGDKLLITGFRQTVVPPPMASLEIKL 300
G + + + W S++ G +L+T ++PPPM+ +
Sbjct: 332 CWTLGGQVITHRFAWTTAVSET------SIALVIDGSHVLVTPLSLGLMPPPMSLFHLTF 385
Query: 301 ESTAQAICFAPKNENVN-----PNSFFVITVDNKLLFYSQKEKHPLNYEAYNSQQFDKSD 355
+ F N + N ++V + + E ++ + F +S
Sbjct: 386 PCAVNEVSFLSYNSKNHIAAYLSNGSLCVSVLPVADTWEEFEGSGISVDPC----FSEST 441
Query: 356 FPFQYHHWLWVDSQTI--VCAMTDEKSTSVIELTMVNDKLVKSNS 398
Y H W+D+ T+ +C D S++ + + + L K++S
Sbjct: 442 LN-NYMHLTWIDTCTLIGICCRADAFSSTPMRSSEASSLLEKNDS 485
Score = 39.9 bits (89), Expect = 0.006
Identities = 22/113 (19%), Positives = 54/113 (47%), Gaps = 2/113 (1%)
Query: 472 YGQHLKLKKYYTEAAIIYERANNNDKAIECYKEALEWELAIKLAYF--WPKAQFKVLCWE 529
+G L +K + +AAI Y+ ++ K+++ Y++ +W +A + K + L +
Sbjct: 1002 WGDQLSEEKCFADAAITYQCCSSYQKSLKAYRDCGDWRGVFTVAGLLKFKKEEILQLAHD 1061
Query: 530 LVTALKEEKRHEEALIILEQFYGDPEECISYAVETSHYKKALRLCSLYDKLQL 582
L + + +A I ++ D + + Y + +++ALR+ ++ + L
Sbjct: 1062 LCDEFQALGKPGDAAKIALEYCSDVDRGVGYFITAREWEEALRVAYMHSRQDL 1114
>04_04_0253 -
23944279-23944358,23944634-23944711,23945118-23945235,
23945496-23945594,23946615-23947418
Length = 392
Score = 32.3 bits (70), Expect = 1.1
Identities = 14/69 (20%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 324 ITVDNKLLFYSQKEKHPLNYEAYNSQQFDKSDFPFQYHHWLWVDSQTIVCAMTDEKSTSV 383
I+ + LF E ++ +N+ K+++ Q W++ +T++C+ + ++
Sbjct: 313 ISYSSYALFGGCSEATKSRFKPWNAADLGKTEYIAQ-EKGCWIEIRTVICSQQQQAIHTI 371
Query: 384 IELTMVNDK 392
+EL ++N K
Sbjct: 372 VELELINLK 380
>07_03_0011 +
12370624-12370684,12372573-12372718,12372793-12373129,
12374323-12374452,12375346-12375406,12375572-12375618,
12376873-12376950,12377195-12377345,12377495-12377558,
12377735-12377893,12378007-12378128,12378952-12378981,
12379050-12379124,12379563-12379644,12379809-12379938,
12381417-12382164,12382833-12383054,12383127-12383276,
12384851-12384904,12384985-12385058,12386130-12386204,
12386365-12386584
Length = 1071
Score = 31.9 bits (69), Expect = 1.5
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 78 ASDKVKITWRGDGNLYAIGFAMDGLRHFKVFDREGHLLYTSEKQKGLEDNIVWRPSGNVI 137
+ D + W G+G L A G + DG ++++ +G L T K KG ++ W G+ +
Sbjct: 328 SKDVTTLDWNGEGTLLATG-SYDG--QARIWNSDGELKQTLFKHKGPIFSLKWNKKGDFL 384
>01_07_0336 - 42833205-42834926
Length = 573
Score = 31.1 bits (67), Expect = 2.6
Identities = 28/81 (34%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
Query: 290 PPPMASLEIK-LESTAQAICFAPKNENVNPNSFFVITVDNK--LLFY--SQKEKHPLNYE 344
PPP A ++ L STA A AP E+V S ++ D L F+ SQ HPL
Sbjct: 5 PPPTAFSRLRRLFSTAAATATAPTPESVL-YSLRTLSKDPSVALAFFRRSQAGGHPLGSA 63
Query: 345 AYNSQQFDKSDFPFQYHHWLW 365
AYN + P H W
Sbjct: 64 AYNLMLRTLASHPTSAHSHFW 84
>11_04_0364 - 16791774-16792490,16792545-16793561,16793856-16793920,
16794787-16796964,16797065-16797322,16799815-16800172
Length = 1530
Score = 30.7 bits (66), Expect = 3.4
Identities = 12/45 (26%), Positives = 26/45 (57%)
Query: 503 KEALEWELAIKLAYFWPKAQFKVLCWELVTALKEEKRHEEALIIL 547
K+ W++ + ++ F KAQ+ + + T ++ + HE AL++L
Sbjct: 1308 KQCRSWKIGVAISLFAWKAQWDFVSYRSCTVVEISRMHELALLVL 1352
>09_04_0308 +
16567361-16568854,16568946-16569068,16569372-16569649,
16570316-16571924,16572363-16573781
Length = 1640
Score = 30.7 bits (66), Expect = 3.4
Identities = 12/45 (26%), Positives = 26/45 (57%)
Query: 503 KEALEWELAIKLAYFWPKAQFKVLCWELVTALKEEKRHEEALIIL 547
K+ W++ + ++ F KAQ+ + + T ++ + HE AL++L
Sbjct: 893 KQCRSWKIGVAISLFAWKAQWDFVSYRSCTVVEISRMHELALLVL 937
>05_06_0102 -
25589011-25589181,25589269-25589496,25589589-25589933,
25590406-25590777,25590957-25591049,25591150-25591401,
25592019-25593224
Length = 888
Score = 30.7 bits (66), Expect = 3.4
Identities = 34/146 (23%), Positives = 55/146 (37%), Gaps = 13/146 (8%)
Query: 56 FHGSEGKQAAKIKNDIVSDDSTASDKVKITWRGDGNLYAIGFAMDGLRHFKVFDREGHLL 115
F G + + N + S D +AS + + + N+ + + G V D G L
Sbjct: 20 FAGDSSVLLSAVGNRVASTDLSASSSLTLPFESSSNVTRLAVSPSGDFLLSV-DDAGRAL 78
Query: 116 YTSEKQKGLEDNIVWR---------PSGNVITTTQ-KIENQYKVTFFEKNGLK-HREFSI 164
Y + ++ + I ++ P GN+I K+ ++ F K H +I
Sbjct: 79 YANLGRRAVLHRIAFKSAPSAVRFSPDGNLIAVAVGKLVQIWRSPAFRKEFFPFHLLRTI 138
Query: 165 PVEHGTYVENIMWSSDSEILTLQCKD 190
P V WS DS L CKD
Sbjct: 139 P-GFAAGVTAFDWSPDSSFLLASCKD 163
>11_06_0148 +
20631949-20632338,20632838-20633044,20633168-20633267,
20633478-20633560,20633656-20633712,20633790-20633942,
20634016-20634094,20634279-20634427,20634541-20634675,
20634783-20634896,20635065-20635175,20635338-20635373,
20635675-20635884
Length = 607
Score = 30.3 bits (65), Expect = 4.5
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 522 QFKVLCWELVTALK--EEKRHEEALIILEQFYGDPEECISYA 561
+F CW++ +L E K EE L + QF+ P EC++ A
Sbjct: 192 KFYGTCWKIFNSLNSLELKSLEEPLYLFGQFFQKPLECLTLA 233
>04_01_0158 - 1801724-1801951,1802047-1803078
Length = 419
Score = 29.5 bits (63), Expect = 7.9
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 69 NDIVSDDSTASDKVKITWRGDGNLYAIGFAMDGL 102
ND + D W+G+ LYA+GF GL
Sbjct: 346 NDFFNKDGYPKTAFPNGWKGESGLYAVGFTRRGL 379
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.319 0.134 0.408
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,411,410
Number of Sequences: 37544
Number of extensions: 647887
Number of successful extensions: 1317
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1306
Number of HSP's gapped (non-prelim): 11
length of query: 590
length of database: 14,793,348
effective HSP length: 86
effective length of query: 504
effective length of database: 11,564,564
effective search space: 5828540256
effective search space used: 5828540256
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 63 (29.5 bits)
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