GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001538-TA|BGIBMGA001538-PA|IPR006849|IKI3
         (590 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5811| Best HMM Match : IKI3 (HMM E-Value=0.0021)                   200   3e-51
SB_21625| Best HMM Match : VAR1 (HMM E-Value=6.3)                      33   0.85 
SB_55025| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   3.4  
SB_53079| Best HMM Match : TPR_1 (HMM E-Value=0)                       31   3.4  
SB_41210| Best HMM Match : MAAL_N (HMM E-Value=0.7)                    31   3.4  
SB_20329| Best HMM Match : TPR_1 (HMM E-Value=0)                       31   3.4  
SB_19018| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   3.4  
SB_38016| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   4.5  
SB_52151| Best HMM Match : TPR_1 (HMM E-Value=0)                       30   6.0  
SB_38530| Best HMM Match : TPR_1 (HMM E-Value=3.4e-32)                 30   6.0  
SB_7278| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   6.0  
SB_42268| Best HMM Match : efhand (HMM E-Value=0.96)                   29   7.9  
SB_38603| Best HMM Match : TPR_1 (HMM E-Value=2e-20)                   29   7.9  

>SB_5811| Best HMM Match : IKI3 (HMM E-Value=0.0021)
          Length = 567

 Score =  200 bits (487), Expect = 3e-51
 Identities = 108/320 (33%), Positives = 174/320 (54%), Gaps = 10/320 (3%)

Query: 1   MEWSPDQELLAIVTKEMHMVLLSCTYDPINEIKLHNQEFGEKQFITVGWGKKETQFHGSE 60
           M WSPD EL+   T E  +++++  +DPI E  +H  EFG+ + I VGWGKKETQFHGS 
Sbjct: 115 MAWSPDLELVVFTTGENTVIMMTKDFDPITEFPIHTAEFGQDEPINVGWGKKETQFHGSA 174

Query: 61  GKQAAKIKNDIVSDDSTASD--KVKITWRGDGNLY---AIGFAMDGLRHFKVFDREGHLL 115
           GK + +    +    S   D    +I+WRGDG  +   AI  A D  R  +V+ REG L+
Sbjct: 175 GKPSTETLKPVTVTPSFPWDDHHCRISWRGDGQYFVVSAIEPATDA-RKLRVWSREGVLM 233

Query: 116 YTSEKQKGLEDNIVWRPSGNVITTTQKIENQYKVTFFEKNGLKHREFSIPVEH-GTYVEN 174
            +SE+  GLE ++ W+PSG++I +TQ+  +++ V FFE+NGL+H EF++P +  G  V  
Sbjct: 234 TSSEEVDGLEQSLCWKPSGSLIASTQRKPHRHDVVFFERNGLRHGEFTLPFQRMGVKVIE 293

Query: 175 IMWSSDSEILTLQCKDTETNTQKVLLYTTSNYHWYLKQ--TLLFRSNQRINKI-IWDNDF 231
           + WS+DS +L ++ ++     ++  +  +  +   + +  T  + S   +  I I     
Sbjct: 294 MQWSTDSTVLAIRIEEMLPEDRQNAIPRSYRFRSAVMRTDTSHYLSGWLVKLISITFLTS 353

Query: 232 DISNNKKMHIILQNGSYLIYSWIWNIDHSKSXXXXXXXXXXXXXGDKLLITGFRQTVVPP 291
            ++      ++   G Y  Y W W+  HS+S             G  LL+T  +  VVPP
Sbjct: 354 LLAQGAYASVLRMRGQYASYEWTWSTLHSQSHSTHNISTVAVIDGANLLLTPMKYMVVPP 413

Query: 292 PMASLEIKLESTAQAICFAP 311
           PMA+  + + +  Q++ FAP
Sbjct: 414 PMAAQTVAMPAAIQSVTFAP 433


>SB_21625| Best HMM Match : VAR1 (HMM E-Value=6.3)
          Length = 269

 Score = 32.7 bits (71), Expect = 0.85
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 397 NSVHVRGVVTQIQAHPTNKSLLFLQFITGHI--HKYNIGGFLENTNI 441
           NS+ VR  +  IQ H  N++ L ++ +  HI  HKYN       TNI
Sbjct: 171 NSLQVRTNIAHIQYHKYNENSLQVRTLIAHIQYHKYNENSLQVRTNI 217



 Score = 31.1 bits (67), Expect = 2.6
 Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 6/90 (6%)

Query: 397 NSVHVRGVVTQIQAHPTNKSLLFLQFITGHI--HKYNIGGFLENTNILFKVPCPSLYQEA 454
           NS+ VR  +  IQ H  N++ L ++    HI  HKYN       TNI   +      + +
Sbjct: 61  NSLQVRTHIEHIQYHQYNENSLQVRTNIAHIQKHKYNENSLQVRTNIA-HIQYHKYNENS 119

Query: 455 LKHXXX---XXXXXXXXXXDYGQHLKLKKY 481
           L+H                 Y  H++  KY
Sbjct: 120 LQHTHTVPQVQRELATSTYPYSTHIQYHKY 149



 Score = 30.3 bits (65), Expect = 4.5
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 397 NSVHVRGVVTQIQAHPTNKSLLFLQFITGHI--HKYNIGGFLENTNI 441
           NS+ VR ++  IQ H  N++ L ++    HI  HKYN       T+I
Sbjct: 190 NSLQVRTLIAHIQYHKYNENSLQVRTNIAHIQYHKYNENSLQVRTHI 236


>SB_55025| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2468

 Score = 30.7 bits (66), Expect = 3.4
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 397  NSVHVRGVVTQIQAHPTNKSLLFLQFITGHI--HKYNIGGFLENTNI 441
            NS+ VR  +  IQ H  NK+ L ++    HI  H+YN       TNI
Sbjct: 2306 NSLQVRTNIVHIQYHQYNKNSLQVRTNIAHIQYHQYNENSLQVRTNI 2352



 Score = 29.5 bits (63), Expect = 7.9
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 397  NSVHVRGVVTQIQAHPTNKSLLFLQFITGHI--HKYNIGGFLENTNI 441
            NS+ VR  +  IQ H  N++ L ++    HI  HKYN       TNI
Sbjct: 2325 NSLQVRTNIAHIQYHQYNENSLQVRTNIAHIQYHKYNENSLQVLTNI 2371


>SB_53079| Best HMM Match : TPR_1 (HMM E-Value=0)
          Length = 772

 Score = 30.7 bits (66), Expect = 3.4
 Identities = 13/35 (37%), Positives = 18/35 (51%)

Query: 472 YGQHLKLKKYYTEAAIIYERANNNDKAIECYKEAL 506
           +G+  K    Y    I+Y    +N KA+E YK AL
Sbjct: 334 FGEECKQADVYNNIGIVYNSLGDNGKAMENYKHAL 368


>SB_41210| Best HMM Match : MAAL_N (HMM E-Value=0.7)
          Length = 536

 Score = 30.7 bits (66), Expect = 3.4
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 5/45 (11%)

Query: 471 DYGQHLKLKKYYTEAAIIYERANNNDKAIE-----CYKEALEWEL 510
           D G+H     Y+ EAAI+ E    N  A+E     C + A++W L
Sbjct: 360 DVGEHFVKTTYFLEAAIVEENPAQNVAALEQQAKACVQPAIDWFL 404


>SB_20329| Best HMM Match : TPR_1 (HMM E-Value=0)
          Length = 330

 Score = 30.7 bits (66), Expect = 3.4
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query: 472 YGQHLKLKKYYTEAAIIYERANNNDKAIECYKEAL 506
           +G+  K    Y    I+YE   +N +A+E YK AL
Sbjct: 14  FGEERKQADVYNNIGIVYESLGDNGQAMENYKHAL 48


>SB_19018| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 434

 Score = 30.7 bits (66), Expect = 3.4
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)

Query: 202 TTSNYHWYLKQTLLFRSNQRINKIIWDNDFDISN 235
           T   Y W ++QTL+F+  Q +N I+ D+  D++N
Sbjct: 108 TDEEYIWCIEQTLVFKDGQPLNMIL-DDGGDLTN 140


>SB_38016| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 215

 Score = 30.3 bits (65), Expect = 4.5
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 397 NSVHVRGVVTQIQAHPTNKSLLFLQFITGHI--HKYNIGGFLENTNI 441
           NS+ VR ++  IQ H  N++ L ++    HI  HKYN       T+I
Sbjct: 19  NSLQVRTLIAHIQYHKYNENSLQVRTNIAHIQYHKYNENSLQVRTHI 65


>SB_52151| Best HMM Match : TPR_1 (HMM E-Value=0)
          Length = 1137

 Score = 29.9 bits (64), Expect = 6.0
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 472 YGQHLKLKKYYTEAAIIYERANNNDKAIECYKEAL 506
           +G+  K    Y    ++Y+   +N KA+E YK AL
Sbjct: 334 FGEECKQADVYNNIVLLYKSLGDNGKAMENYKHAL 368


>SB_38530| Best HMM Match : TPR_1 (HMM E-Value=3.4e-32)
          Length = 803

 Score = 29.9 bits (64), Expect = 6.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query: 472 YGQHLKLKKYYTEAAIIYERANNNDKAIECYKEAL 506
           +G+ LK    Y     +Y+   +N KA+E YK AL
Sbjct: 221 FGEELKQADVYYGIGAVYQSLGDNGKAMENYKNAL 255


>SB_7278| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 498

 Score = 29.9 bits (64), Expect = 6.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query: 472 YGQHLKLKKYYTEAAIIYERANNNDKAIECYKEAL 506
           +G+  K    Y    I+YE   +N +A+E YK AL
Sbjct: 262 FGEERKQADVYFNIGIVYESLGDNGQAMENYKNAL 296


>SB_42268| Best HMM Match : efhand (HMM E-Value=0.96)
          Length = 610

 Score = 29.5 bits (63), Expect = 7.9
 Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 3/60 (5%)

Query: 529 ELVTALKEEKRHEEALIILEQFYGDPEECISYA-VETSHYKKAL--RLCSLYDKLQLKGI 585
           +++  +K EK+HEE  +I E F  D +E  ++A  E    ++ +   + SL +KL  +GI
Sbjct: 517 DMLAKMKREKKHEETDVIQEAFMKDMKEKKNFAPTENRQPERHVLNAVTSLLNKLNDQGI 576


>SB_38603| Best HMM Match : TPR_1 (HMM E-Value=2e-20)
          Length = 313

 Score = 29.5 bits (63), Expect = 7.9
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query: 472 YGQHLKLKKYYTEAAIIYERANNNDKAIECYKEAL 506
           +G+  K    Y    I+YE   +N +A+E YK AL
Sbjct: 57  FGEERKQTGVYYNIGIVYESLGDNGQAMENYKNAL 91


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.319    0.134    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,664,047
Number of Sequences: 59808
Number of extensions: 799277
Number of successful extensions: 1983
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1929
Number of HSP's gapped (non-prelim): 56
length of query: 590
length of database: 16,821,457
effective HSP length: 86
effective length of query: 504
effective length of database: 11,677,969
effective search space: 5885696376
effective search space used: 5885696376
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 63 (29.5 bits)