GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001538-TA|BGIBMGA001538-PA|IPR006849|IKI3
         (590 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080546-1|AAC29475.1|  432|Anopheles gambiae S-adenosyl-L-homoc...    29   0.46 
AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcript...    24   9.8  

>AF080546-1|AAC29475.1|  432|Anopheles gambiae
           S-adenosyl-L-homocysteine hydrolase protein.
          Length = 432

 Score = 28.7 bits (61), Expect = 0.46
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 202 TTSNYHWYLKQTLLFRSNQRINKIIWDNDFDISN 235
           T   Y W ++QTL+F   + +N I+ D+  D++N
Sbjct: 105 TDEEYMWCIRQTLIFPDGKPLNMIL-DDGGDLTN 137


>AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1209

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 299 KLESTAQAICFAPKNENVNPNSFFVITVDNKLLFYSQKEKHPLNYEAYNSQQFDK 353
           K +    A+  A ++  +N N   + TVD K   + QKE H  +    N +  DK
Sbjct: 920 KADHGLSALHLAQQDYQLNCN---IKTVDGKGATWKQKELHGTHTHQLNLEHIDK 971


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.319    0.134    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 605,118
Number of Sequences: 2123
Number of extensions: 23154
Number of successful extensions: 44
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 43
Number of HSP's gapped (non-prelim): 2
length of query: 590
length of database: 516,269
effective HSP length: 68
effective length of query: 522
effective length of database: 371,905
effective search space: 194134410
effective search space used: 194134410
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 50 (24.2 bits)