GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001538-TA|BGIBMGA001538-PA|IPR006849|IKI3
         (590 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    24   4.0  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   9.4  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.8 bits (49), Expect = 4.0
 Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 4/66 (6%)

Query: 27  DPINEIKLHNQEFGEKQFITVGWGKKETQFHGSEGKQAAKIKNDIVSDDSTASDKVKITW 86
           DP+    + +  + E+  IT  W   E     S    +    N  +  + T +  +K++W
Sbjct: 197 DPLCSFAIESISY-EQTAITYVWKNDEGTLRKSPSLTSL---NAYLIKNQTITCPIKVSW 252

Query: 87  RGDGNL 92
           R DG +
Sbjct: 253 RADGQI 258


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.6 bits (46), Expect = 9.4
 Identities = 11/34 (32%), Positives = 15/34 (44%)

Query: 319 NSFFVITVDNKLLFYSQKEKHPLNYEAYNSQQFD 352
           +SF  I      LF +   K P N + YN+   D
Sbjct: 347 SSFGKILATEPTLFSNVTPKFPRNIDEYNNNDLD 380


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.134    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,304
Number of Sequences: 429
Number of extensions: 7446
Number of successful extensions: 14
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 2
length of query: 590
length of database: 140,377
effective HSP length: 61
effective length of query: 529
effective length of database: 114,208
effective search space: 60416032
effective search space used: 60416032
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 46 (22.6 bits)