GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001538-TA|BGIBMGA001538-PA|IPR006849|IKI3
         (590 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g13680.1 68418.m01593 IKI3 family protein weak similarity to ...    82   9e-16
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi...    36   0.100
At1g04610.1 68414.m00455 flavin-containing monooxygenase / FMO (...    35   0.13 
At5g16460.1 68418.m01924 hypothetical protein similar to unknown...    35   0.17 
At3g21060.1 68416.m02662 transducin family protein / WD-40 repea...    31   2.8  
At1g61730.1 68414.m06962 DNA-binding storekeeper protein-related...    29   6.5  
At3g21990.1 68416.m02775 receptor-like protein kinase-related co...    29   8.6  
At1g06820.1 68414.m00727 carotenoid isomerase, putative similar ...    29   8.6  

>At5g13680.1 68418.m01593 IKI3 family protein weak similarity to
           SP|O95163 IkappaB kinase complex-associated protein (IKK
           complex-associated protein) (p150) {Homo sapiens};
           contains Pfam profile PF04762: IKI3 family
          Length = 1319

 Score = 82.2 bits (194), Expect = 9e-16
 Identities = 74/318 (23%), Positives = 134/318 (42%), Gaps = 37/318 (11%)

Query: 73  SDDSTASDKVKITWRGDGNLYA-IGFAMDG---LRHFKVFDREGHLLYTSEKQKGLEDNI 128
           +D S     + I+WRGDG  +A +G   +     +  K+++ +   L +S + K     I
Sbjct: 168 NDLSVNCGGISISWRGDGKYFATMGEVYESGCMSKKIKIWESDSGALQSSSETKEFTQGI 227

Query: 129 V-WRPSGNVITTTQKI---ENQYKVTFFEKNGLKHREFSI--PVEHGTYVENIMWSSDSE 182
           + W PSG  I    K    ++   + FFE+NGL+   F I  P +     EN+ W+S S+
Sbjct: 228 LEWMPSGAKIAAVYKRKSDDSSPSIAFFERNGLERSSFRIGEPEDATESCENLKWNSASD 287

Query: 183 ILT--LQCKDTETNTQKVLLYTTSNYHWYLKQTLLFRSNQRINKIIWDNDFDISNNKKMH 240
           +L   + CK  +     + ++  SN HWYLKQ + +     +  ++WD        K + 
Sbjct: 288 LLAGVVSCKTYDA----IRVWFFSNNHWYLKQEIRYPREAGVT-VMWD------PTKPLQ 336

Query: 241 II--LQNGSYLIYSWIWNIDHSKSXXXXXXXXXXXXXGDKLLITGFRQTVVPPPMASLEI 298
           +I    +G   +  ++W                      K+L+T    +++PPPM    +
Sbjct: 337 LICWTLSGQVSVRHFMW------VTAVMEDSTAFVIDNSKILVTPLSLSLMPPPMYLFSL 390

Query: 299 KLESTAQAICFAPKNENVNPNSFFVITVDNKLLFY---SQKEKHPLNYEAYNSQQFDKSD 355
              S  + I +  +N   + N   V   D  L F    +      L  + ++ +  D   
Sbjct: 391 SFSSAVRDIAYYSRN---SKNCLAVFLSDGNLSFVEFPAPNTWEDLEGKDFSVEISDCKT 447

Query: 356 FPFQYHHWLWVDSQTIVC 373
               + H LW+D  +++C
Sbjct: 448 ALGSFVHLLWLDVHSLLC 465



 Score = 34.7 bits (76), Expect = 0.17
 Identities = 25/108 (23%), Positives = 48/108 (44%), Gaps = 2/108 (1%)

Query: 472  YGQHLKLKKYYTEAAIIYERANNNDKAIECYKEALEWELAIKLAYFWP--KAQFKVLCWE 529
            +  HL  +K + +AA  Y      +KA + Y+E  +W   +++       K +   L +E
Sbjct: 991  WADHLIDEKRFEDAATTYLCCCKLEKASKAYRECGDWSGVLRVGALMKLGKDEILKLAYE 1050

Query: 530  LVTALKEEKRHEEALIILEQFYGDPEECISYAVETSHYKKALRLCSLY 577
            L   +    +  EA  I  ++  D    IS  +    +++ALR+  L+
Sbjct: 1051 LCEEVNALGKPAEAAKIALEYCSDISGGISLLINAREWEEALRVAFLH 1098


>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
           similarity to unknown protein (ref|NP_005638.1)
          Length = 613

 Score = 35.5 bits (78), Expect = 0.100
 Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 6/94 (6%)

Query: 49  WGKKETQF---HGSEGKQAAKIKNDIVSDDSTASDKVKITWRGDGNLYAIGFAMDGLRHF 105
           W   E  F   H      A  +K+     +  + D   + W G+G L A G + DG    
Sbjct: 292 WSIPEGSFKAVHTGRNINALILKHAKGKSNEKSKDVTTLDWNGEGTLLATG-SCDG--QA 348

Query: 106 KVFDREGHLLYTSEKQKGLEDNIVWRPSGNVITT 139
           +++   G L+ T  K KG   ++ W   G+ + T
Sbjct: 349 RIWTLNGELISTLSKHKGPIFSLKWNKKGDYLLT 382


>At1g04610.1 68414.m00455 flavin-containing monooxygenase / FMO
           (YUCCA3) identical to gi:16555356
          Length = 437

 Score = 35.1 bits (77), Expect = 0.13
 Identities = 14/34 (41%), Positives = 18/34 (52%)

Query: 69  NDIVSDDSTASDKVKITWRGDGNLYAIGFAMDGL 102
           ND  SDD    +     W+G+  LYA+GF   GL
Sbjct: 364 NDFFSDDGIPKNPFPNGWKGEAGLYAVGFTRKGL 397


>At5g16460.1 68418.m01924 hypothetical protein similar to unknown
           protein (pir||T02326)
          Length = 368

 Score = 34.7 bits (76), Expect = 0.17
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 3/40 (7%)

Query: 144 ENQYKVTFFEKNGLKHREFSIPVEHGTYVENIMWSSDSEI 183
           EN   V  F+K   K R FS+PV H  +V  ++W  +SEI
Sbjct: 138 ENPSAVFSFDK---KKRSFSVPVGHSVHVSLVLWMPESEI 174


>At3g21060.1 68416.m02662 transducin family protein / WD-40 repeat
           family protein contains 4 WD-40 repeats (PF00400);
           similar to Retinoblastoma-binding protein 5 (RBBP-5)
           [Homo sapiens](RBQ-3)
          Length = 547

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 16/52 (30%), Positives = 23/52 (44%)

Query: 88  GDGNLYAIGFAMDGLRHFKVFDREGHLLYTSEKQKGLEDNIVWRPSGNVITT 139
           GDG     G A  G     ++DR GHL+   E  K    ++ W P   +I +
Sbjct: 302 GDGEWVVGGSACKGEHKIYIWDRAGHLVKILEGPKEALIDLAWHPVHPIIVS 353


>At1g61730.1 68414.m06962 DNA-binding storekeeper protein-related
           contains Pfam profile: PF04504 protein of unknown
           function, DUF573; similar to storekeeper protein
           GI:14268476 [Solanum tuberosum]
          Length = 376

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 3/53 (5%)

Query: 176 MWSSDSEILTLQ-CKDTETNTQKVLLYTTSNYHWYLKQTLLFR--SNQRINKI 225
           +WS + EIL LQ   D + +T K     T+ ++ +LK+++ F    NQ ++KI
Sbjct: 158 LWSEEDEILVLQGMIDFKADTGKSPYVDTNAFYDFLKKSISFEVSKNQFMDKI 210


>At3g21990.1 68416.m02775 receptor-like protein kinase-related
           contains Pfam profile: PF01657 Domain of unknown
           function that is usually associated with protein kinase
           domain Pfam:PF00069; similar to receptor-like protein
           kinase 5 (GI:13506747){Arabidopsis thaliana}
          Length = 256

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 14/32 (43%), Positives = 18/32 (56%)

Query: 208 WYLKQTLLFRSNQRINKIIWDNDFDISNNKKM 239
           WY +  L   S    NKI ++NDF +SN K M
Sbjct: 123 WYDQCLLKISSVASFNKIDYENDFYLSNPKNM 154


>At1g06820.1 68414.m00727 carotenoid isomerase, putative similar to
           carotenoid isomerase from Lycopersicon esculentum
           [gi:19550437]; contains Pfam profile: PF02032 Phytoene
           dehydrogenase related enzyme
          Length = 595

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)

Query: 527 CWELVTALK--EEKRHEEALIILEQFYGDPEECISYA 561
           CW++  +L   E K  EE + +  QF+  P EC++ A
Sbjct: 206 CWKIFNSLNSLELKSLEEPIYLFGQFFQKPLECLTLA 242


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.319    0.134    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,151,821
Number of Sequences: 28952
Number of extensions: 592752
Number of successful extensions: 1467
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1458
Number of HSP's gapped (non-prelim): 10
length of query: 590
length of database: 12,070,560
effective HSP length: 85
effective length of query: 505
effective length of database: 9,609,640
effective search space: 4852868200
effective search space used: 4852868200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 62 (29.1 bits)