Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001537-TA|BGIBMGA001537-PA|IPR010793|Ribosomal protein
S30, mitochondrial
         (496 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   7.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   7.7  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   7.7  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.6 bits (46), Expect = 7.7
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 177 IIMNNLSDNLPHILSTQIDYDARHEAF 203
           II NN  D+   + S+   YD R+  +
Sbjct: 211 IIYNNADDSFQRLTSSTFVYDPRYTKY 237


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 7.7
 Identities = 18/84 (21%), Positives = 31/84 (36%)

Query: 383 VERDHAMKPYLGKDEKVIADIEDDNRRCWLEERYKYLVSNRPKHSLIPEVYLWEKIYKIQ 442
           +E  +A++  LG   K+  D   +N   +   +       + K SL+    L  +  +I 
Sbjct: 54  LEELNALRTELGASTKLATDTTSENEENYPHYQMSGAKQKKKKRSLMGAQGLSIRGLQIN 113

Query: 443 HNTRFFEAKRRPFERGINPFNRRL 466
           H            +R   P NR L
Sbjct: 114 HEDETIRPVFSTLQRAEYPTNRSL 137


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.6 bits (46), Expect = 7.7
 Identities = 9/33 (27%), Positives = 17/33 (51%)

Query: 421 SNRPKHSLIPEVYLWEKIYKIQHNTRFFEAKRR 453
           +++     IP+   W K+  I H T FF+  ++
Sbjct: 205 TDKSNEKKIPKSSGWRKLRNIVHWTPFFQTYKK 237


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.137    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,887
Number of Sequences: 429
Number of extensions: 7243
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 3
length of query: 496
length of database: 140,377
effective HSP length: 60
effective length of query: 436
effective length of database: 114,637
effective search space: 49981732
effective search space used: 49981732
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 46 (22.6 bits)