GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001537-TA|BGIBMGA001537-PA|IPR010793|Ribosomal protein
S30, mitochondrial
         (496 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          29   0.098
AJ850294-1|CAH64514.1|  539|Tribolium castaneum putative esteras...    25   1.2  
AJ850293-1|CAH64513.1|  539|Tribolium castaneum putative esteras...    25   1.2  
AJ850292-1|CAH64512.1|  539|Tribolium castaneum putative esteras...    25   1.2  
AJ850297-1|CAH64517.1|  539|Tribolium castaneum putative esteras...    24   2.1  
AJ850295-1|CAH64515.1|  539|Tribolium castaneum putative esteras...    24   2.1  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    23   6.5  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           23   6.5  
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    22   8.5  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 28.7 bits (61), Expect = 0.098
 Identities = 18/69 (26%), Positives = 39/69 (56%), Gaps = 5/69 (7%)

Query: 120 IEQQASNI-LQEIKPQIE---DAIAIELTDVERNFKFLQDKSIKMQQEDTITKCVVRQIN 175
           + ++ SN  L EI+  ++   D    ++  ++RN +F QDK + ++QE    K  V++ +
Sbjct: 305 VHKKCSNFTLPEIQHNLDVLVDMCEQDIIRIDRNTRFNQDKIVALRQEQETLKSQVQRES 364

Query: 176 RIIMNNLSD 184
            ++ ++L D
Sbjct: 365 DVV-DSLKD 372


>AJ850294-1|CAH64514.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 25.0 bits (52), Expect = 1.2
 Identities = 10/25 (40%), Positives = 16/25 (64%)

Query: 57  QSKIQELNTIEEKQIALNMPRYYGW 81
           ++ I+ L +   +QIAL +PRY  W
Sbjct: 252 ETMIKCLKSRPARQIALTVPRYQAW 276


>AJ850293-1|CAH64513.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 25.0 bits (52), Expect = 1.2
 Identities = 10/25 (40%), Positives = 16/25 (64%)

Query: 57  QSKIQELNTIEEKQIALNMPRYYGW 81
           ++ I+ L +   +QIAL +PRY  W
Sbjct: 252 ETMIRCLKSRPARQIALTVPRYQAW 276


>AJ850292-1|CAH64512.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 25.0 bits (52), Expect = 1.2
 Identities = 10/25 (40%), Positives = 16/25 (64%)

Query: 57  QSKIQELNTIEEKQIALNMPRYYGW 81
           ++ I+ L +   +QIAL +PRY  W
Sbjct: 252 ETMIKCLKSRPARQIALTVPRYQAW 276


>AJ850297-1|CAH64517.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 24.2 bits (50), Expect = 2.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)

Query: 60  IQELNTIEEKQIALNMPRYYGW 81
           I+ L +   +QIAL +PRY  W
Sbjct: 255 IKCLKSRPARQIALTVPRYQAW 276


>AJ850295-1|CAH64515.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 24.2 bits (50), Expect = 2.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)

Query: 60  IQELNTIEEKQIALNMPRYYGW 81
           I+ L +   +QIAL +PRY  W
Sbjct: 255 IKCLKSRPARQIALTVPRYQAW 276


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 22.6 bits (46), Expect = 6.5
 Identities = 7/21 (33%), Positives = 12/21 (57%)

Query: 216 VKWRKENKWPKSTHYESTDRP 236
           +KW+K+NK P + +      P
Sbjct: 286 MKWKKDNKLPNTKNVRRKTNP 306


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 22.6 bits (46), Expect = 6.5
 Identities = 7/21 (33%), Positives = 12/21 (57%)

Query: 216 VKWRKENKWPKSTHYESTDRP 236
           +KW+K+NK P + +      P
Sbjct: 286 MKWKKDNKLPNTKNVRRKTNP 306


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 303 DLTYPLVTQTVITNGKLWSLYAYQL 327
           DL  P+ +Q V    K+  LY +QL
Sbjct: 212 DLVLPIYSQLVFMCKKINKLYGHQL 236


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.137    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,870
Number of Sequences: 317
Number of extensions: 5491
Number of successful extensions: 18
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 13
length of query: 496
length of database: 114,650
effective HSP length: 60
effective length of query: 436
effective length of database: 95,630
effective search space: 41694680
effective search space used: 41694680
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)