Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001537-TA|BGIBMGA001537-PA|IPR010793|Ribosomal protein
S30, mitochondrial
(496 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1D4.01 ||SPAC1F3.11|sequence orphan|Schizosaccharomyces pomb... 32 0.16
SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr... 29 1.1
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo... 28 3.4
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom... 27 4.5
SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr 1|||M... 27 6.0
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc... 27 7.9
SPCC1739.05 |set5||histone lysine methyltransferase Set5 |Schizo... 27 7.9
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 27 7.9
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 27 7.9
>SPAC1D4.01 ||SPAC1F3.11|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 285
Score = 32.3 bits (70), Expect = 0.16
Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 4/122 (3%)
Query: 45 REGKLLRRRQSFQSKIQ-ELNTIEEKQIALNMPRYYGWQCIMLNNDKVPYNAMPLVQYYT 103
+ + RRR+ F ++ + +L +++ I L + + N + NA L+ T
Sbjct: 40 KSNRSFRRRKVFGNEKEFDLEELDDNDIRLRQA-LEATKRRKIRNSIIGINAEKLLNQET 98
Query: 104 RSHF-IPVAKLP-EAYNEIEQQASNILQEIKPQIEDAIAIELTDVERNFKFLQDKSIKMQ 161
+ + A P EA ++ Q+S +++ P +ED A + +V+ N L K++
Sbjct: 99 KKEKQLNTANEPHEANDQTSAQSSKLIEAQLPTVEDRFAKQTNEVDINTHLLNFVEKKLK 158
Query: 162 QE 163
QE
Sbjct: 159 QE 160
>SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr
2|||Manual
Length = 539
Score = 29.5 bits (63), Expect = 1.1
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 166 ITKCVVRQINRIIMNNLSDNLPHILSTQIDYDARHEAFWHI 206
IT +QI II +NL L H+LS DY + EA W I
Sbjct: 359 ITAGNTQQIQAIIESNLIPPLVHLLS-YADYKTKKEACWAI 398
>SPAC3F10.16c |||GTP binding protein,
HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 616
Score = 27.9 bits (59), Expect = 3.4
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 450 AKRRPFERGIN---PFNRRLDDHISPYIPKVLREYPRSKKK 487
A + P +G N PF RRL+D SP P + P S++K
Sbjct: 534 AMQGPVYKGRNTMQPFQRRLNDDASPKYPMNAQGKPLSRRK 574
>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
Eng2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 706
Score = 27.5 bits (58), Expect = 4.5
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 314 ITNGKLWSLYAYQLNTIVMHNDTVDSN 340
+T+GK+W LYA+ ++ N T+ SN
Sbjct: 187 LTDGKIWFLYAFPTSSSSTFNLTLASN 213
>SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 407
Score = 27.1 bits (57), Expect = 6.0
Identities = 22/103 (21%), Positives = 43/103 (41%), Gaps = 7/103 (6%)
Query: 53 RQSFQSKIQELNTIEEKQIALNMPRYYGWQCIMLNNDK-------VPYNAMPLVQYYTRS 105
+ SF ++ L+ + E+Q+ + P +C L + Y+A+ L+ Y+T S
Sbjct: 271 KNSFGDQVIPLSVLFEEQLFMLTPEEAAQECASLGKNSQLSEIICAGYSALNLIHYFTAS 330
Query: 106 HFIPVAKLPEAYNEIEQQASNILQEIKPQIEDAIAIELTDVER 148
I A ++ A I + K + I+ +D E+
Sbjct: 331 EKIVQAWTIADGSKAPDAAGIIHSDFKKKFVAGEVIKFSDFEK 373
>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 849
Score = 26.6 bits (56), Expect = 7.9
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 235 RPVQYIGFWPGDIDEFGLLSYHG 257
R +++ W GDI E GL S HG
Sbjct: 623 RSQKFMEEWMGDISELGLSSEHG 645
>SPCC1739.05 |set5||histone lysine methyltransferase Set5
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 319
Score = 26.6 bits (56), Expect = 7.9
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 348 GTKPLQLYETIENGKVLGLNEDVLIMLLQFYMNAPVERDHAMKPYLGKDEKVIADIEDDN 407
GTK + LYE ++ K L +++ V +A E A+ +L +D++ ++D+ED+
Sbjct: 251 GTKAISLYEGTDSEKYLKISKYV----ENPRSHALAEGVPALPLFLEEDDE-LSDLEDNL 305
Query: 408 RRCWLEE 414
C LEE
Sbjct: 306 WGCKLEE 312
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 26.6 bits (56), Expect = 7.9
Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 4/90 (4%)
Query: 100 QYYTRSHFIPVAKLP----EAYNEIEQQASNILQEIKPQIEDAIAIELTDVERNFKFLQD 155
+Y R F V +P E E E + Q IK ++ D + + + + QD
Sbjct: 278 KYAQRCQFFKVDYVPLNGGEEEEEEEGEEKEDAQNIKERMVDFCFSKFMEKNQQRREQQD 337
Query: 156 KSIKMQQEDTITKCVVRQINRIIMNNLSDN 185
K +++D + + N I+ ++ DN
Sbjct: 338 KGENKKRQDDVDQATDNNTNTILEDDEKDN 367
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1919
Score = 26.6 bits (56), Expect = 7.9
Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 4/90 (4%)
Query: 100 QYYTRSHFIPVAKLP----EAYNEIEQQASNILQEIKPQIEDAIAIELTDVERNFKFLQD 155
+Y R F V +P E E E + Q IK ++ D + + + + QD
Sbjct: 278 KYAQRCQFFKVDYVPLNGGEEEEEEEGEEKEDAQNIKERMVDFCFSKFMEKNQQRREQQD 337
Query: 156 KSIKMQQEDTITKCVVRQINRIIMNNLSDN 185
K +++D + + N I+ ++ DN
Sbjct: 338 KGENKKRQDDVDQATDNNTNTILEDDEKDN 367
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.321 0.137 0.419
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,447,398
Number of Sequences: 5004
Number of extensions: 111780
Number of successful extensions: 301
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 297
Number of HSP's gapped (non-prelim): 9
length of query: 496
length of database: 2,362,478
effective HSP length: 76
effective length of query: 420
effective length of database: 1,982,174
effective search space: 832513080
effective search space used: 832513080
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)
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