Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001537-TA|BGIBMGA001537-PA|IPR010793|Ribosomal protein
S30, mitochondrial
(496 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0510 + 3841630-3844089,3844235-3844358,3844641-3844786,384... 33 0.69
10_07_0063 - 12502305-12503361,12503567-12503668,12504251-125043... 31 2.1
05_07_0326 + 29274287-29274428,29274577-29275379 31 2.1
11_01_0657 + 5322295-5323367,5323436-5323555,5323743-5323791,532... 29 6.4
06_03_0037 + 15773444-15773647,15773862-15774367,15775011-157752... 29 6.4
03_06_0678 - 35480711-35484658 29 8.5
01_01_0809 + 6294991-6295044,6295099-6296334 29 8.5
>03_01_0510 + 3841630-3844089,3844235-3844358,3844641-3844786,
3844861-3844958,3845313-3845502
Length = 1005
Score = 32.7 bits (71), Expect = 0.69
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 346 CFGTKPLQLYETIENGKVLGLNEDVLIMLLQFYMNAPVERDHAMKPYLGKDEKVIADI 403
CF +L E + N GL D+ + Q +NAPV DH YL + V DI
Sbjct: 945 CFSKMAEELCELLMNSPGEGLTPDLYMGCFQTMLNAPVPDDH-RSSYLQEAVSVFTDI 1001
>10_07_0063 -
12502305-12503361,12503567-12503668,12504251-12504378,
12504653-12504764,12504876-12504927,12505260-12505517,
12505943-12506079,12506296-12506606
Length = 718
Score = 31.1 bits (67), Expect = 2.1
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 195 DYDARHEAFWHIGGVDPPTTTVKWRKENKWPKSTHYESTDRP 236
++ R+EAFW GG T R+ N W + H + +P
Sbjct: 550 NHQYRNEAFWQQGGTSTSRTGFMDRQSNNWGSTDHDKPAFQP 591
>05_07_0326 + 29274287-29274428,29274577-29275379
Length = 314
Score = 31.1 bits (67), Expect = 2.1
Identities = 17/58 (29%), Positives = 30/58 (51%)
Query: 111 AKLPEAYNEIEQQASNILQEIKPQIEDAIAIELTDVERNFKFLQDKSIKMQQEDTITK 168
A P + EI+Q+A QE +PQ ++A + E + + K ++Q+E+ TK
Sbjct: 119 APAPTSVQEIKQKAPTAKQEPQPQFDEAPNKKKQQQEEEEEAAKKKQQQLQEEEEATK 176
>11_01_0657 +
5322295-5323367,5323436-5323555,5323743-5323791,
5323968-5324084,5324200-5324268,5324394-5324488,
5325183-5325521,5327043-5327084,5327814-5327907,
5328121-5328190,5328719-5329677
Length = 1008
Score = 29.5 bits (63), Expect = 6.4
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 114 PEAYNEIEQQASNILQEIKPQIEDAIAIELTDVERNFKFLQDKSIKMQQEDTITKCVVRQ 173
P A+ + +QQ ++LQ K + A A +L +++ + LQ + + QQ+ I K + Q
Sbjct: 244 PSAFLQQQQQQQHLLQLTKQNPQAAAAAQLNLLQQQ-RILQMQQQQQQQQQQILKNLPLQ 302
Query: 174 INRIIMNNL 182
N++ L
Sbjct: 303 RNQLQQQQL 311
>06_03_0037 +
15773444-15773647,15773862-15774367,15775011-15775246,
15775483-15775685,15775989-15776279,15776997-15777084,
15777539-15777861
Length = 616
Score = 29.5 bits (63), Expect = 6.4
Identities = 29/96 (30%), Positives = 41/96 (42%), Gaps = 7/96 (7%)
Query: 160 MQQEDTITKCVVRQINRIIMNNLSDNLPHILSTQIDYDARH-EAFWHI--GGVDPPTTTV 216
M+ DT+ +C V Q + +M LSD H I + R E WHI G D T
Sbjct: 197 MEFVDTMQQCRVPQSS--VMGVLSDM--HGDCETIPFTTRDLENRWHIIDGHSDHLNTIF 252
Query: 217 KWRKENKWPKSTHYESTDRPVQYIGFWPGDIDEFGL 252
K+ + T P+++ W ID+FGL
Sbjct: 253 MRHKDTETEMMVCINQTYTPIEFEYAWKEFIDKFGL 288
>03_06_0678 - 35480711-35484658
Length = 1315
Score = 29.1 bits (62), Expect = 8.5
Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 12/127 (9%)
Query: 106 HFIPVAKLPEAYNEI---EQQASNILQEIKPQIEDA--IAIELTDVERNFKF--LQDKSI 158
H I KLP + I E+QA+ + K +E+ +A + DV FK+ L+ K+
Sbjct: 32 HEILKRKLPAILDVIADAEEQAAKHREGAKAWLEELRKVAYQANDVFDEFKYEALRRKAK 91
Query: 159 KMQQEDTITKCVVRQI----NRIIMN-NLSDNLPHILSTQIDYDARHEAFWHIGGVDPPT 213
+ VV ++ NRI+ + + L IL+ A AF +PP
Sbjct: 92 AKGHYKKLGSIVVIKLIPTHNRILFRYRMGNKLRMILNAIEVLIAEMNAFRFKFRPEPPM 151
Query: 214 TTVKWRK 220
+++KWRK
Sbjct: 152 SSIKWRK 158
>01_01_0809 + 6294991-6295044,6295099-6296334
Length = 429
Score = 29.1 bits (62), Expect = 8.5
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
Query: 210 DPPTTTVKWRKENKWPKSTHYESTDRPVQYIG-FWPGDIDEFGLLSY---HGRGHILDRK 265
D +T W +E KW T + DR V IG G + G LS+ G GH++
Sbjct: 341 DGVVSTEAWMRELKWDGLTAFLVADRAVWRIGEELAGYVQRSGPLSHVIVDGAGHLVPAD 400
Query: 266 TSFGEQDNIEALHCQA 281
Q+ IE QA
Sbjct: 401 NGRVAQEMIEDWVLQA 416
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.321 0.137 0.419
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,279,306
Number of Sequences: 37544
Number of extensions: 612682
Number of successful extensions: 1181
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1177
Number of HSP's gapped (non-prelim): 8
length of query: 496
length of database: 14,793,348
effective HSP length: 85
effective length of query: 411
effective length of database: 11,602,108
effective search space: 4768466388
effective search space used: 4768466388
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)
- SilkBase 1999-2023 -