GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001537-TA|BGIBMGA001537-PA|IPR010793|Ribosomal protein
S30, mitochondrial
         (496 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13287| Best HMM Match : Cu2_monoox_C (HMM E-Value=6.6)              45   1e-04
SB_59535| Best HMM Match : PDCD9 (HMM E-Value=3.8e-05)                 40   0.003
SB_41151| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.057
SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.23 
SB_43814| Best HMM Match : RRM_1 (HMM E-Value=1.3)                     31   2.1  
SB_20106| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   2.1  
SB_10201| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   2.1  
SB_9241| Best HMM Match : RRM_1 (HMM E-Value=1.3)                      31   2.1  
SB_5694| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   2.1  
SB_34845| Best HMM Match : CXC (HMM E-Value=0.03)                      29   6.5  
SB_17897| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-14)          29   6.5  
SB_56312| Best HMM Match : Calx-beta (HMM E-Value=2)                   29   8.6  
SB_46950| Best HMM Match : zf-CCHC (HMM E-Value=0.0015)                29   8.6  
SB_36821| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   8.6  

>SB_13287| Best HMM Match : Cu2_monoox_C (HMM E-Value=6.6)
          Length = 237

 Score = 45.2 bits (102), Expect = 1e-04
 Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 6/97 (6%)

Query: 260 HILDRKTSFGEQDNIEALHCQAMKASFGWLLAQANYQGFTTFNDLTYPLVTQTVITNGKL 319
           H +    +FG++  ++  H   + + FG L + A  +G      L+ P+ TQ VIT+G+ 
Sbjct: 109 HTMFLANAFGQR--LDQTHAFGIMSMFGVLASTAMSRGVKPGEHLSEPVCTQCVITDGRQ 166

Query: 320 WSLYAYQLNTIVMHNDTVDSNPKHNICFGTKPLQLYE 356
             L  YQLNT+ +  D    +   N+ +GT  + L++
Sbjct: 167 LVLMCYQLNTMSLQED----HGVKNLAWGTDYMDLFK 199


>SB_59535| Best HMM Match : PDCD9 (HMM E-Value=3.8e-05)
          Length = 362

 Score = 40.3 bits (90), Expect = 0.003
 Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 2/68 (2%)

Query: 270 EQD-NIEALHCQAMKASFGWLLAQANYQ-GFTTFNDLTYPLVTQTVITNGKLWSLYAYQL 327
           E+D +I  +  Q M  +F  L+A+A    G+    DL  PL  Q ++TNG   S   +QL
Sbjct: 232 EKDWSIRDISAQGMMFTFARLVAEATCNHGYQMGEDLEEPLTGQCIMTNGIRLSFLCFQL 291

Query: 328 NTIVMHND 335
           NT+ + +D
Sbjct: 292 NTLDLRSD 299


>SB_41151| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 293

 Score = 36.3 bits (80), Expect = 0.057
 Identities = 30/135 (22%), Positives = 60/135 (44%), Gaps = 8/135 (5%)

Query: 65  TIEEKQIALNMP---RYYGWQCIMLNNDKVPYNAMPLVQYYTRSHFIPVAKLPEAYNEIE 121
           T+  + +  N+P    Y  ++ +   +  V Y  +P++        +PV     AY  + 
Sbjct: 114 TLRIETMRKNLPVISSYVAYESLTAISSNVAYENLPVISSNLAYKNLPVISSNVAYENLP 173

Query: 122 QQASNILQEIKPQIEDAIAIELTDVERNFKFLQDKSIKMQQEDTITKCVVRQINRIIMNN 181
             +SN+  E  P I   +A E   +    K    + + +++E    +  VR++NR   N 
Sbjct: 174 VISSNVAYENLPVISSNVAYERASL-HVVKLPVQQEVLVREE---VRNSVRELNRYKHNV 229

Query: 182 LSDNLPHILSTQIDY 196
             +NLP ++S+ + Y
Sbjct: 230 AYENLP-VISSNLAY 243


>SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4700

 Score = 34.3 bits (75), Expect = 0.23
 Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 1/86 (1%)

Query: 101  YYTRSHFIPVAKLPEAYNEIEQQASNILQEIKPQIEDAIAIELTDVERNFKFLQDKSIKM 160
            YY      P  K  EA N     A   L +IK +I++ +   L ++  NF+    + +K 
Sbjct: 3482 YYIFCDVEPKRKALEAANAELAAAEEKLSKIKAKIQE-LDENLAELTANFERATSEKLKC 3540

Query: 161  QQEDTITKCVVRQINRIIMNNLSDNL 186
            QQE   T   +   NR++    S+N+
Sbjct: 3541 QQEAESTAKTIELANRLVGGLASENV 3566


>SB_43814| Best HMM Match : RRM_1 (HMM E-Value=1.3)
          Length = 642

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 5/67 (7%)

Query: 402 DIEDDNRRCWLEERYKYL--VSNRPKHSLIPEV-YLWEKIYKIQHNTRFFEAKRRPFER- 457
           DI ++N   W+ E Y+ +  VS + K    P   Y+ +  Y+ QHNTR +   + P ++ 
Sbjct: 115 DITEENLELWISE-YEVINNVSIKLKTKKNPTSGYVLQNYYRCQHNTRNWSPSKDPQKKL 173

Query: 458 GINPFNR 464
            INP  R
Sbjct: 174 HINPSAR 180


>SB_20106| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 302

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 5/67 (7%)

Query: 402 DIEDDNRRCWLEERYKYL--VSNRPKHSLIPEV-YLWEKIYKIQHNTRFFEAKRRPFER- 457
           DI ++N   W+ E Y+ +  VS + K    P   Y+ +  Y+ QHNTR +   + P ++ 
Sbjct: 34  DITEENLELWISE-YEVINNVSIKLKTKKNPTSGYVLQNYYRCQHNTRNWSPSKDPQKKL 92

Query: 458 GINPFNR 464
            INP  R
Sbjct: 93  HINPSAR 99


>SB_10201| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1162

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 5/67 (7%)

Query: 402 DIEDDNRRCWLEERYKYL--VSNRPKHSLIPEV-YLWEKIYKIQHNTRFFEAKRRPFER- 457
           DI ++N   W+ E Y+ +  VS + K    P   Y+ +  Y+ QHNTR +   + P ++ 
Sbjct: 173 DITEENLELWISE-YEVINNVSIKLKTKKNPTSGYVLQNYYRCQHNTRNWSPSKDPQKKL 231

Query: 458 GINPFNR 464
            INP  R
Sbjct: 232 HINPSAR 238


>SB_9241| Best HMM Match : RRM_1 (HMM E-Value=1.3)
          Length = 204

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 5/67 (7%)

Query: 402 DIEDDNRRCWLEERYKYL--VSNRPKHSLIPEV-YLWEKIYKIQHNTRFFEAKRRPFER- 457
           DI ++N   W+ E Y+ +  VS + K    P   Y+ +  Y+ QHNTR +   + P ++ 
Sbjct: 25  DITEENLELWISE-YEVINNVSIKLKTKKNPTSGYVLQNYYRCQHNTRNWSPSKDPQKKL 83

Query: 458 GINPFNR 464
            INP  R
Sbjct: 84  HINPSAR 90


>SB_5694| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1113

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 5/67 (7%)

Query: 402 DIEDDNRRCWLEERYKYL--VSNRPKHSLIPEV-YLWEKIYKIQHNTRFFEAKRRPFER- 457
           DI ++N   W+ E Y+ +  VS + K    P   Y+ +  Y+ QHNTR +   + P ++ 
Sbjct: 270 DITEENLELWISE-YEVINNVSIKLKTKKNPTSGYVLQNYYRCQHNTRNWSPSKDPQKKL 328

Query: 458 GINPFNR 464
            INP  R
Sbjct: 329 HINPSAR 335


>SB_34845| Best HMM Match : CXC (HMM E-Value=0.03)
          Length = 1397

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 6/70 (8%)

Query: 400  IADIE-DDNRRCWLEERYKYL--VSNRPKHSLIPEV-YLWEKIYKIQHNTRFFEAKRRPF 455
            + +IE ++N   W+ E Y+ +  VS + K    P   Y+ +  Y+ QHNTR +   + P 
Sbjct: 952  VLEIEIEENLELWISE-YEVINNVSIKLKTKKNPTSGYVLQNYYRCQHNTRNWSPSKDPQ 1010

Query: 456  ER-GINPFNR 464
            ++  INP +R
Sbjct: 1011 KKLHINPSDR 1020


>SB_17897| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-14)
          Length = 1217

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 13/38 (34%), Positives = 21/38 (55%)

Query: 260 HILDRKTSFGEQDNIEALHCQAMKASFGWLLAQANYQG 297
           H +++K S GE+D I+ LH      +   +L Q N +G
Sbjct: 59  HCVEQKISEGEEDEIQCLHIFKCDTTSPPILVQVNIEG 96


>SB_56312| Best HMM Match : Calx-beta (HMM E-Value=2)
          Length = 311

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 3/95 (3%)

Query: 357 TIENGKVLGLNEDVLIMLLQFYMNAPVERDHAMKPY-LGKDEKVIADIEDDNRRCWLEER 415
           TIE   V  L+E   I L   YMN  V+ +       +  D+KV  +I+    R  L E 
Sbjct: 179 TIEEDHVTELDESFGISLSSDYMNVTVDENRKSTVIKILNDDKVTMEIDGPTSRS-LAEG 237

Query: 416 YKYLVSNRPK-HSLIPEVYLWEKIYKIQHNTRFFE 449
            K +VS   K H  IP   L ++   ++++  F E
Sbjct: 238 EKTVVSVVAKGHYEIPLSILVKRSLYVRYDVDFCE 272


>SB_46950| Best HMM Match : zf-CCHC (HMM E-Value=0.0015)
          Length = 797

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 13/40 (32%), Positives = 22/40 (55%)

Query: 258 RGHILDRKTSFGEQDNIEALHCQAMKASFGWLLAQANYQG 297
           R H ++++ S GE+D I+ LH      +   +L Q N +G
Sbjct: 168 RTHCVEQEISEGEEDEIQCLHIFKCDTTSPPILVQVNIEG 207


>SB_36821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1503

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 15/60 (25%), Positives = 36/60 (60%), Gaps = 1/60 (1%)

Query: 119 EIEQQASNILQEIKPQIEDAIAIELTDVERNFKFLQDKSIKMQQEDTITKCVVRQINRII 178
           E E++ + I+   K  +E+A   +LTD++ N + +QDKS ++++   + K + +   +++
Sbjct: 582 EEEKKKAEIVNS-KEAMEEASHKKLTDIKNNGEKVQDKSAEIKRSYMLWKVICKSTIKLL 640


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.321    0.137    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,267,969
Number of Sequences: 59808
Number of extensions: 759084
Number of successful extensions: 1364
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1356
Number of HSP's gapped (non-prelim): 17
length of query: 496
length of database: 16,821,457
effective HSP length: 85
effective length of query: 411
effective length of database: 11,737,777
effective search space: 4824226347
effective search space used: 4824226347
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)