Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001537-TA|BGIBMGA001537-PA|IPR010793|Ribosomal protein
S30, mitochondrial
(496 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC007735-1|AAH07735.1| 439|Homo sapiens mitochondrial ribosomal... 110 1e-23
BC002460-1|AAH02460.2| 435|Homo sapiens MRPS30 protein protein. 110 1e-23
AL355716-1|CAB90811.1| 349|Homo sapiens PDCD9 protein. 110 1e-23
AL355715-1|CAB90810.1| 439|Homo sapiens PCD9 protein. 110 1e-23
AK222894-1|BAD96614.1| 439|Homo sapiens mitochondrial ribosomal... 110 1e-23
AK074777-1|BAC11202.1| 439|Homo sapiens protein ( Homo sapiens ... 110 1e-23
AF146192-1|AAF65227.1| 439|Homo sapiens programmed cell death 9... 110 1e-23
AK222704-1|BAD96424.1| 439|Homo sapiens mitochondrial ribosomal... 109 2e-23
DQ205685-1|ABA27099.1| 423|Homo sapiens mitochondrial ribosomal... 33 2.3
BC000041-1|AAH00041.1| 423|Homo sapiens mitochondrial ribosomal... 33 2.3
AY421759-1|AAR38839.1| 292|Homo sapiens mitochondrial ribosomal... 33 2.3
AL357673-3|CAH73898.1| 263|Homo sapiens mitochondrial ribosomal... 33 2.3
AL357673-2|CAH73897.1| 423|Homo sapiens mitochondrial ribosomal... 33 2.3
AL161644-9|CAI23565.1| 263|Homo sapiens mitochondrial ribosomal... 33 2.3
AL161644-8|CAI23564.1| 423|Homo sapiens mitochondrial ribosomal... 33 2.3
AF325707-1|AAG52881.1| 423|Homo sapiens ribosomal protein L2 pr... 33 2.3
BC117411-1|AAI17412.1| 929|Homo sapiens receptor interacting pr... 31 7.0
BC072406-1|AAH72406.1| 929|Homo sapiens receptor interacting pr... 31 7.0
BC053627-1|AAH53627.1| 884|Homo sapiens receptor interacting pr... 31 7.0
AY429674-1|AAS55390.1| 929|Homo sapiens dusty protein kinase pr... 31 7.0
AY208850-1|AAP42418.1| 929|Homo sapiens dusty protein kinase pr... 31 7.0
AL035454-2|CAI42112.1| 836|Homo sapiens Crn, crooked neck-like ... 31 7.0
AL035454-1|CAI42113.1| 848|Homo sapiens Crn, crooked neck-like ... 31 7.0
AK023728-1|BAB14659.1| 512|Homo sapiens protein ( Homo sapiens ... 31 7.0
AK023246-1|BAB14485.1| 564|Homo sapiens protein ( Homo sapiens ... 31 7.0
AK022908-1|BAB14303.1| 564|Homo sapiens protein ( Homo sapiens ... 31 7.0
AF318303-1|AAK01925.1| 848|Homo sapiens CGI-201 protein, type I... 31 7.0
AF318302-1|AAK01924.1| 687|Homo sapiens CGI-201 protein, short ... 31 7.0
AF255443-1|AAF65571.2| 836|Homo sapiens CGI-201 protein protein. 31 7.0
AF111802-1|AAL39004.1| 687|Homo sapiens MSTP021 protein. 31 7.0
AB016840-1|BAC53587.1| 687|Homo sapiens crn protein. 31 7.0
BC012151-1|AAH12151.1| 1120|Homo sapiens nuclear transcription f... 31 9.3
AL356472-6|CAH72746.1| 1120|Homo sapiens nuclear transcription f... 31 9.3
AL356472-5|CAH72745.1| 1024|Homo sapiens nuclear transcription f... 31 9.3
AL356218-4|CAI13305.1| 1120|Homo sapiens nuclear transcription f... 31 9.3
AL356218-3|CAI13304.1| 1024|Homo sapiens nuclear transcription f... 31 9.3
AF332009-1|AAK16545.1| 1024|Homo sapiens nuclear transcription f... 31 9.3
>BC007735-1|AAH07735.1| 439|Homo sapiens mitochondrial ribosomal
protein S30 protein.
Length = 439
Score = 110 bits (264), Expect = 1e-23
Identities = 52/114 (45%), Positives = 73/114 (64%), Gaps = 1/114 (0%)
Query: 272 DNIEAL-HCQAMKASFGWLLAQANYQGFTTFNDLTYPLVTQTVITNGKLWSLYAYQLNTI 330
D IE + A+ + F W AQA YQGF + D+T P V+Q VIT+GK +S + YQLNT+
Sbjct: 318 DQIEVVFRANAIASLFAWTGAQAMYQGFWSEADVTRPFVSQAVITDGKYFSFFCYQLNTL 377
Query: 331 VMHNDTVDSNPKHNICFGTKPLQLYETIENGKVLGLNEDVLIMLLQFYMNAPVE 384
+ +NP+ NIC+GT+ LYETIE+ V G N+DVL+ ++ F +N P E
Sbjct: 378 ALTTQADQNNPRKNICWGTQSKPLYETIEDNDVKGFNDDVLLQIVHFLLNRPKE 431
>BC002460-1|AAH02460.2| 435|Homo sapiens MRPS30 protein protein.
Length = 435
Score = 110 bits (264), Expect = 1e-23
Identities = 52/114 (45%), Positives = 73/114 (64%), Gaps = 1/114 (0%)
Query: 272 DNIEAL-HCQAMKASFGWLLAQANYQGFTTFNDLTYPLVTQTVITNGKLWSLYAYQLNTI 330
D IE + A+ + F W AQA YQGF + D+T P V+Q VIT+GK +S + YQLNT+
Sbjct: 314 DQIEVVFRANAIASLFAWTGAQAMYQGFWSEADVTRPFVSQAVITDGKYFSFFCYQLNTL 373
Query: 331 VMHNDTVDSNPKHNICFGTKPLQLYETIENGKVLGLNEDVLIMLLQFYMNAPVE 384
+ +NP+ NIC+GT+ LYETIE+ V G N+DVL+ ++ F +N P E
Sbjct: 374 ALTTQADQNNPRKNICWGTQSKPLYETIEDNDVKGFNDDVLLQIVHFLLNRPKE 427
>AL355716-1|CAB90811.1| 349|Homo sapiens PDCD9 protein.
Length = 349
Score = 110 bits (264), Expect = 1e-23
Identities = 52/114 (45%), Positives = 73/114 (64%), Gaps = 1/114 (0%)
Query: 272 DNIEAL-HCQAMKASFGWLLAQANYQGFTTFNDLTYPLVTQTVITNGKLWSLYAYQLNTI 330
D IE + A+ + F W AQA YQGF + D+T P V+Q VIT+GK +S + YQLNT+
Sbjct: 228 DQIEVVFRANAIASLFAWTGAQAMYQGFWSEADVTRPFVSQAVITDGKYFSFFCYQLNTL 287
Query: 331 VMHNDTVDSNPKHNICFGTKPLQLYETIENGKVLGLNEDVLIMLLQFYMNAPVE 384
+ +NP+ NIC+GT+ LYETIE+ V G N+DVL+ ++ F +N P E
Sbjct: 288 ALTTQADQNNPRKNICWGTQSKPLYETIEDNDVKGFNDDVLLQIVHFLLNRPKE 341
>AL355715-1|CAB90810.1| 439|Homo sapiens PCD9 protein.
Length = 439
Score = 110 bits (264), Expect = 1e-23
Identities = 52/114 (45%), Positives = 73/114 (64%), Gaps = 1/114 (0%)
Query: 272 DNIEAL-HCQAMKASFGWLLAQANYQGFTTFNDLTYPLVTQTVITNGKLWSLYAYQLNTI 330
D IE + A+ + F W AQA YQGF + D+T P V+Q VIT+GK +S + YQLNT+
Sbjct: 318 DQIEVVFRANAIASLFAWTGAQAMYQGFWSEADVTRPFVSQAVITDGKYFSFFCYQLNTL 377
Query: 331 VMHNDTVDSNPKHNICFGTKPLQLYETIENGKVLGLNEDVLIMLLQFYMNAPVE 384
+ +NP+ NIC+GT+ LYETIE+ V G N+DVL+ ++ F +N P E
Sbjct: 378 ALTTQADQNNPRKNICWGTQSKPLYETIEDNDVKGFNDDVLLQIVHFLLNRPKE 431
>AK222894-1|BAD96614.1| 439|Homo sapiens mitochondrial ribosomal
protein S30 variant protein.
Length = 439
Score = 110 bits (264), Expect = 1e-23
Identities = 52/114 (45%), Positives = 73/114 (64%), Gaps = 1/114 (0%)
Query: 272 DNIEAL-HCQAMKASFGWLLAQANYQGFTTFNDLTYPLVTQTVITNGKLWSLYAYQLNTI 330
D IE + A+ + F W AQA YQGF + D+T P V+Q VIT+GK +S + YQLNT+
Sbjct: 318 DQIEVVFRANAIASLFAWTGAQAMYQGFWSEADVTRPFVSQAVITDGKYFSFFCYQLNTL 377
Query: 331 VMHNDTVDSNPKHNICFGTKPLQLYETIENGKVLGLNEDVLIMLLQFYMNAPVE 384
+ +NP+ NIC+GT+ LYETIE+ V G N+DVL+ ++ F +N P E
Sbjct: 378 ALTTQADQNNPRKNICWGTQSKPLYETIEDNDVKGFNDDVLLQIVHFLLNRPKE 431
>AK074777-1|BAC11202.1| 439|Homo sapiens protein ( Homo sapiens
cDNA FLJ90296 fis, clone NT2RP2000394, weakly similar to
Gallus gallus p52 pro-apototic protein mRNA. ).
Length = 439
Score = 110 bits (264), Expect = 1e-23
Identities = 52/114 (45%), Positives = 73/114 (64%), Gaps = 1/114 (0%)
Query: 272 DNIEAL-HCQAMKASFGWLLAQANYQGFTTFNDLTYPLVTQTVITNGKLWSLYAYQLNTI 330
D IE + A+ + F W AQA YQGF + D+T P V+Q VIT+GK +S + YQLNT+
Sbjct: 318 DQIEVVFRANAIASLFAWTGAQAMYQGFWSEADVTRPFVSQAVITDGKYFSFFCYQLNTL 377
Query: 331 VMHNDTVDSNPKHNICFGTKPLQLYETIENGKVLGLNEDVLIMLLQFYMNAPVE 384
+ +NP+ NIC+GT+ LYETIE+ V G N+DVL+ ++ F +N P E
Sbjct: 378 ALTTQADQNNPRKNICWGTQSKPLYETIEDNDVKGFNDDVLLQIVHFLLNRPKE 431
>AF146192-1|AAF65227.1| 439|Homo sapiens programmed cell death 9
protein.
Length = 439
Score = 110 bits (264), Expect = 1e-23
Identities = 52/114 (45%), Positives = 73/114 (64%), Gaps = 1/114 (0%)
Query: 272 DNIEAL-HCQAMKASFGWLLAQANYQGFTTFNDLTYPLVTQTVITNGKLWSLYAYQLNTI 330
D IE + A+ + F W AQA YQGF + D+T P V+Q VIT+GK +S + YQLNT+
Sbjct: 318 DQIEVVFRANAIASLFAWTGAQAMYQGFWSEADVTRPFVSQAVITDGKYFSFFCYQLNTL 377
Query: 331 VMHNDTVDSNPKHNICFGTKPLQLYETIENGKVLGLNEDVLIMLLQFYMNAPVE 384
+ +NP+ NIC+GT+ LYETIE+ V G N+DVL+ ++ F +N P E
Sbjct: 378 ALTTQADQNNPRKNICWGTQSKPLYETIEDNDVKGFNDDVLLQIVHFLLNRPKE 431
>AK222704-1|BAD96424.1| 439|Homo sapiens mitochondrial ribosomal
protein S30 variant protein.
Length = 439
Score = 109 bits (262), Expect = 2e-23
Identities = 52/114 (45%), Positives = 72/114 (63%), Gaps = 1/114 (0%)
Query: 272 DNIEAL-HCQAMKASFGWLLAQANYQGFTTFNDLTYPLVTQTVITNGKLWSLYAYQLNTI 330
D IE + A+ + F W AQA YQGF + D+T P V+Q VIT+GK +S + YQLNT+
Sbjct: 318 DQIEVVFRANAIASLFAWTGAQAMYQGFWSEADVTRPFVSQAVITDGKYFSFFCYQLNTL 377
Query: 331 VMHNDTVDSNPKHNICFGTKPLQLYETIENGKVLGLNEDVLIMLLQFYMNAPVE 384
+ +NP+ NIC+GT+ LYETIE+ V G N+DVL+ + F +N P E
Sbjct: 378 ALTTQADQNNPRKNICWGTQSKPLYETIEDNDVKGFNDDVLLQIAHFLLNRPKE 431
>DQ205685-1|ABA27099.1| 423|Homo sapiens mitochondrial ribosomal
protein L37 protein.
Length = 423
Score = 33.1 bits (72), Expect = 2.3
Identities = 20/70 (28%), Positives = 35/70 (50%)
Query: 260 HILDRKTSFGEQDNIEALHCQAMKASFGWLLAQANYQGFTTFNDLTYPLVTQTVITNGKL 319
++LD+ + + L + + +FG LAQA L P+V Q+V T+G++
Sbjct: 292 YLLDKANLRPHRLQPDQLRAKMILFAFGSALAQARLLYGNDAKVLEQPVVVQSVGTDGRV 351
Query: 320 WSLYAYQLNT 329
+ +QLNT
Sbjct: 352 FHFLVFQLNT 361
>BC000041-1|AAH00041.1| 423|Homo sapiens mitochondrial ribosomal
protein L37 protein.
Length = 423
Score = 33.1 bits (72), Expect = 2.3
Identities = 20/70 (28%), Positives = 35/70 (50%)
Query: 260 HILDRKTSFGEQDNIEALHCQAMKASFGWLLAQANYQGFTTFNDLTYPLVTQTVITNGKL 319
++LD+ + + L + + +FG LAQA L P+V Q+V T+G++
Sbjct: 292 YLLDKANLRPHRLQPDQLRAKMILFAFGSALAQARLLYGNDAKVLEQPVVVQSVGTDGRV 351
Query: 320 WSLYAYQLNT 329
+ +QLNT
Sbjct: 352 FHFLVFQLNT 361
>AY421759-1|AAR38839.1| 292|Homo sapiens mitochondrial ribosomal
protein L37 variant 2 protein.
Length = 292
Score = 33.1 bits (72), Expect = 2.3
Identities = 20/70 (28%), Positives = 35/70 (50%)
Query: 260 HILDRKTSFGEQDNIEALHCQAMKASFGWLLAQANYQGFTTFNDLTYPLVTQTVITNGKL 319
++LD+ + + L + + +FG LAQA L P+V Q+V T+G++
Sbjct: 161 YLLDKANLRPHRLQPDQLRAKMILFAFGSALAQARLLYGNDAKVLEQPVVVQSVGTDGRV 220
Query: 320 WSLYAYQLNT 329
+ +QLNT
Sbjct: 221 FHFLVFQLNT 230
>AL357673-3|CAH73898.1| 263|Homo sapiens mitochondrial ribosomal
protein L37 protein.
Length = 263
Score = 33.1 bits (72), Expect = 2.3
Identities = 20/70 (28%), Positives = 35/70 (50%)
Query: 260 HILDRKTSFGEQDNIEALHCQAMKASFGWLLAQANYQGFTTFNDLTYPLVTQTVITNGKL 319
++LD+ + + L + + +FG LAQA L P+V Q+V T+G++
Sbjct: 76 YLLDKANLRPHRLQPDQLRAKMILFAFGSALAQARLLYGNDAKVLEQPVVVQSVGTDGRV 135
Query: 320 WSLYAYQLNT 329
+ +QLNT
Sbjct: 136 FHFLVFQLNT 145
>AL357673-2|CAH73897.1| 423|Homo sapiens mitochondrial ribosomal
protein L37 protein.
Length = 423
Score = 33.1 bits (72), Expect = 2.3
Identities = 20/70 (28%), Positives = 35/70 (50%)
Query: 260 HILDRKTSFGEQDNIEALHCQAMKASFGWLLAQANYQGFTTFNDLTYPLVTQTVITNGKL 319
++LD+ + + L + + +FG LAQA L P+V Q+V T+G++
Sbjct: 292 YLLDKANLRPHRLQPDQLRAKMILFAFGSALAQARLLYGNDAKVLEQPVVVQSVGTDGRV 351
Query: 320 WSLYAYQLNT 329
+ +QLNT
Sbjct: 352 FHFLVFQLNT 361
>AL161644-9|CAI23565.1| 263|Homo sapiens mitochondrial ribosomal
protein L37 protein.
Length = 263
Score = 33.1 bits (72), Expect = 2.3
Identities = 20/70 (28%), Positives = 35/70 (50%)
Query: 260 HILDRKTSFGEQDNIEALHCQAMKASFGWLLAQANYQGFTTFNDLTYPLVTQTVITNGKL 319
++LD+ + + L + + +FG LAQA L P+V Q+V T+G++
Sbjct: 76 YLLDKANLRPHRLQPDQLRAKMILFAFGSALAQARLLYGNDAKVLEQPVVVQSVGTDGRV 135
Query: 320 WSLYAYQLNT 329
+ +QLNT
Sbjct: 136 FHFLVFQLNT 145
>AL161644-8|CAI23564.1| 423|Homo sapiens mitochondrial ribosomal
protein L37 protein.
Length = 423
Score = 33.1 bits (72), Expect = 2.3
Identities = 20/70 (28%), Positives = 35/70 (50%)
Query: 260 HILDRKTSFGEQDNIEALHCQAMKASFGWLLAQANYQGFTTFNDLTYPLVTQTVITNGKL 319
++LD+ + + L + + +FG LAQA L P+V Q+V T+G++
Sbjct: 292 YLLDKANLRPHRLQPDQLRAKMILFAFGSALAQARLLYGNDAKVLEQPVVVQSVGTDGRV 351
Query: 320 WSLYAYQLNT 329
+ +QLNT
Sbjct: 352 FHFLVFQLNT 361
>AF325707-1|AAG52881.1| 423|Homo sapiens ribosomal protein L2
protein.
Length = 423
Score = 33.1 bits (72), Expect = 2.3
Identities = 20/70 (28%), Positives = 35/70 (50%)
Query: 260 HILDRKTSFGEQDNIEALHCQAMKASFGWLLAQANYQGFTTFNDLTYPLVTQTVITNGKL 319
++LD+ + + L + + +FG LAQA L P+V Q+V T+G++
Sbjct: 292 YLLDKANLRPHRLQPDQLRAKMILFAFGSALAQARLLYGNDAKVLEQPVVVQSVGTDGRV 351
Query: 320 WSLYAYQLNT 329
+ +QLNT
Sbjct: 352 FHFLVFQLNT 361
>BC117411-1|AAI17412.1| 929|Homo sapiens receptor interacting
protein kinase 5 protein.
Length = 929
Score = 31.5 bits (68), Expect = 7.0
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Query: 115 EAYNEIEQQASNILQEIKPQIEDAIAI---ELTDVERNFKFLQDKSIKMQQEDTIT---K 168
E Y + A+ +E+K I + + EL D N +F +D + E T K
Sbjct: 400 ELYESLMNIANRKQEEMKDMIVETLNTMKEELLDDATNMEF-KDVIVPENGEPVGTREIK 458
Query: 169 CVVRQINRIIMNNLSDNLPHILSTQIDY 196
C +RQI +I++ L+ + + L + +DY
Sbjct: 459 CCIRQIQELIISRLNQAVANKLISSVDY 486
>BC072406-1|AAH72406.1| 929|Homo sapiens receptor interacting
protein kinase 5 protein.
Length = 929
Score = 31.5 bits (68), Expect = 7.0
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Query: 115 EAYNEIEQQASNILQEIKPQIEDAIAI---ELTDVERNFKFLQDKSIKMQQEDTIT---K 168
E Y + A+ +E+K I + + EL D N +F +D + E T K
Sbjct: 400 ELYESLMNIANRKQEEMKDMIVETLNTMKEELLDDATNMEF-KDVIVPENGEPVGTREIK 458
Query: 169 CVVRQINRIIMNNLSDNLPHILSTQIDY 196
C +RQI +I++ L+ + + L + +DY
Sbjct: 459 CCIRQIQELIISRLNQAVANKLISSVDY 486
>BC053627-1|AAH53627.1| 884|Homo sapiens receptor interacting
protein kinase 5 protein.
Length = 884
Score = 31.5 bits (68), Expect = 7.0
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Query: 115 EAYNEIEQQASNILQEIKPQIEDAIAI---ELTDVERNFKFLQDKSIKMQQEDTIT---K 168
E Y + A+ +E+K I + + EL D N +F +D + E T K
Sbjct: 400 ELYESLMNIANRKQEEMKDMIVETLNTMKEELLDDATNMEF-KDVIVPENGEPVGTREIK 458
Query: 169 CVVRQINRIIMNNLSDNLPHILSTQIDY 196
C +RQI +I++ L+ + + L + +DY
Sbjct: 459 CCIRQIQELIISRLNQAVANKLISSVDY 486
>AY429674-1|AAS55390.1| 929|Homo sapiens dusty protein kinase
protein.
Length = 929
Score = 31.5 bits (68), Expect = 7.0
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Query: 115 EAYNEIEQQASNILQEIKPQIEDAIAI---ELTDVERNFKFLQDKSIKMQQEDTIT---K 168
E Y + A+ +E+K I + + EL D N +F +D + E T K
Sbjct: 400 ELYESLMNIANRKQEEMKDMIVETLNTMKEELLDDATNMEF-KDVIVPENGEPVGTREIK 458
Query: 169 CVVRQINRIIMNNLSDNLPHILSTQIDY 196
C +RQI +I++ L+ + + L + +DY
Sbjct: 459 CCIRQIQELIISRLNQAVANKLISSVDY 486
>AY208850-1|AAP42418.1| 929|Homo sapiens dusty protein kinase
protein.
Length = 929
Score = 31.5 bits (68), Expect = 7.0
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Query: 115 EAYNEIEQQASNILQEIKPQIEDAIAI---ELTDVERNFKFLQDKSIKMQQEDTIT---K 168
E Y + A+ +E+K I + + EL D N +F +D + E T K
Sbjct: 400 ELYESLMNIANRKQEEMKDMIVETLNTMKEELLDDATNMEF-KDVIVPENGEPVGTREIK 458
Query: 169 CVVRQINRIIMNNLSDNLPHILSTQIDY 196
C +RQI +I++ L+ + + L + +DY
Sbjct: 459 CCIRQIQELIISRLNQAVANKLISSVDY 486
>AL035454-2|CAI42112.1| 836|Homo sapiens Crn, crooked neck-like 1
(Drosophila) protein.
Length = 836
Score = 31.5 bits (68), Expect = 7.0
Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 430 PEVYLWEKIYKIQHNTRFFEAKRRPFERGINPFNRRLDDHISPYIPKVLREYPRSKKKFE 489
P+V W K + + +F R+ +ER + F D+H+ ++ ++ ++K+FE
Sbjct: 362 PDVKNWIKYARFEEKHAYFAHARKVYERAVEFFG---DEHMDEHLYVAFAKFEENQKEFE 418
>AL035454-1|CAI42113.1| 848|Homo sapiens Crn, crooked neck-like 1
(Drosophila) protein.
Length = 848
Score = 31.5 bits (68), Expect = 7.0
Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 430 PEVYLWEKIYKIQHNTRFFEAKRRPFERGINPFNRRLDDHISPYIPKVLREYPRSKKKFE 489
P+V W K + + +F R+ +ER + F D+H+ ++ ++ ++K+FE
Sbjct: 374 PDVKNWIKYARFEEKHAYFAHARKVYERAVEFFG---DEHMDEHLYVAFAKFEENQKEFE 430
>AK023728-1|BAB14659.1| 512|Homo sapiens protein ( Homo sapiens
cDNA FLJ13666 fis, clone PLACE1011664, moderately
similar to CROOKED NECK PROTEIN. ).
Length = 512
Score = 31.5 bits (68), Expect = 7.0
Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 430 PEVYLWEKIYKIQHNTRFFEAKRRPFERGINPFNRRLDDHISPYIPKVLREYPRSKKKFE 489
P+V W K + + +F R+ +ER + F D+H+ ++ ++ ++K+FE
Sbjct: 38 PDVKNWIKYARFEEKHAYFAHARKVYERAVEFFG---DEHMDEHLYVAFAKFEENQKEFE 94
>AK023246-1|BAB14485.1| 564|Homo sapiens protein ( Homo sapiens
cDNA FLJ13184 fis, clone NT2RP3004206, moderately
similar to CROOKED NECK PROTEIN. ).
Length = 564
Score = 31.5 bits (68), Expect = 7.0
Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 430 PEVYLWEKIYKIQHNTRFFEAKRRPFERGINPFNRRLDDHISPYIPKVLREYPRSKKKFE 489
P+V W K + + +F R+ +ER + F D+H+ ++ ++ ++K+FE
Sbjct: 90 PDVKNWIKYARFEEKHAYFAHARKVYERAVEFFG---DEHMDEHLYVAFAKFEENQKEFE 146
>AK022908-1|BAB14303.1| 564|Homo sapiens protein ( Homo sapiens
cDNA FLJ12846 fis, clone NT2RP2003308, moderately
similar to CROOKED NECK PROTEIN. ).
Length = 564
Score = 31.5 bits (68), Expect = 7.0
Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 430 PEVYLWEKIYKIQHNTRFFEAKRRPFERGINPFNRRLDDHISPYIPKVLREYPRSKKKFE 489
P+V W K + + +F R+ +ER + F D+H+ ++ ++ ++K+FE
Sbjct: 90 PDVKNWIKYARFEEKHAYFAHARKVYERAVEFFG---DEHMDEHLYVAFAKFEENQKEFE 146
>AF318303-1|AAK01925.1| 848|Homo sapiens CGI-201 protein, type II
protein.
Length = 848
Score = 31.5 bits (68), Expect = 7.0
Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 430 PEVYLWEKIYKIQHNTRFFEAKRRPFERGINPFNRRLDDHISPYIPKVLREYPRSKKKFE 489
P+V W K + + +F R+ +ER + F D+H+ ++ ++ ++K+FE
Sbjct: 374 PDVKNWIKYARFEEKHAYFAHARKVYERAVEFFG---DEHMDEHLYVAFAKFEENQKEFE 430
>AF318302-1|AAK01924.1| 687|Homo sapiens CGI-201 protein, short
form protein.
Length = 687
Score = 31.5 bits (68), Expect = 7.0
Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 430 PEVYLWEKIYKIQHNTRFFEAKRRPFERGINPFNRRLDDHISPYIPKVLREYPRSKKKFE 489
P+V W K + + +F R+ +ER + F D+H+ ++ ++ ++K+FE
Sbjct: 213 PDVKNWIKYARFEEKHAYFAHARKVYERAVEFFG---DEHMDEHLYVAFAKFEENQKEFE 269
>AF255443-1|AAF65571.2| 836|Homo sapiens CGI-201 protein protein.
Length = 836
Score = 31.5 bits (68), Expect = 7.0
Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 430 PEVYLWEKIYKIQHNTRFFEAKRRPFERGINPFNRRLDDHISPYIPKVLREYPRSKKKFE 489
P+V W K + + +F R+ +ER + F D+H+ ++ ++ ++K+FE
Sbjct: 362 PDVKNWIKYARFEEKHAYFAHARKVYERAVEFFG---DEHMDEHLYVAFAKFEENQKEFE 418
>AF111802-1|AAL39004.1| 687|Homo sapiens MSTP021 protein.
Length = 687
Score = 31.5 bits (68), Expect = 7.0
Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 430 PEVYLWEKIYKIQHNTRFFEAKRRPFERGINPFNRRLDDHISPYIPKVLREYPRSKKKFE 489
P+V W K + + +F R+ +ER + F D+H+ ++ ++ ++K+FE
Sbjct: 213 PDVKNWIKYARFEEKHAYFAHARKVYERAVEFFG---DEHMDEHLYVAFAKFEENQKEFE 269
>AB016840-1|BAC53587.1| 687|Homo sapiens crn protein.
Length = 687
Score = 31.5 bits (68), Expect = 7.0
Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 430 PEVYLWEKIYKIQHNTRFFEAKRRPFERGINPFNRRLDDHISPYIPKVLREYPRSKKKFE 489
P+V W K + + +F R+ +ER + F D+H+ ++ ++ ++K+FE
Sbjct: 213 PDVKNWIKYARFEEKHAYFAHARKVYERAVEFFG---DEHMDEHLYVAFAKFEENQKEFE 269
>BC012151-1|AAH12151.1| 1120|Homo sapiens nuclear transcription
factor, X-box binding 1 protein.
Length = 1120
Score = 31.1 bits (67), Expect = 9.3
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 10/96 (10%)
Query: 142 ELTDVERNFKFLQDKS--IKMQQEDTITKCVVRQ---INRIIMNNLSDNLPHILSTQIDY 196
E V FKF D + I +++++ C ++ NRI N S P LS Q+ Y
Sbjct: 3 EAPPVSGTFKFNTDAAEFIPQEKKNSGLNCGTQRRLDSNRIGRRNYSSPPPCHLSRQVPY 62
Query: 197 D---ARHEAFWHIGGVDPPTTTVKWRKE--NKWPKS 227
D A H+ +H G P + ++ NK PKS
Sbjct: 63 DEISAVHQHSYHPSGSKPKSQQTSFQSSPCNKSPKS 98
>AL356472-6|CAH72746.1| 1120|Homo sapiens nuclear transcription
factor, X-box binding 1 protein.
Length = 1120
Score = 31.1 bits (67), Expect = 9.3
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 10/96 (10%)
Query: 142 ELTDVERNFKFLQDKS--IKMQQEDTITKCVVRQ---INRIIMNNLSDNLPHILSTQIDY 196
E V FKF D + I +++++ C ++ NRI N S P LS Q+ Y
Sbjct: 3 EAPPVSGTFKFNTDAAEFIPQEKKNSGLNCGTQRRLDSNRIGRRNYSSPPPCHLSRQVPY 62
Query: 197 D---ARHEAFWHIGGVDPPTTTVKWRKE--NKWPKS 227
D A H+ +H G P + ++ NK PKS
Sbjct: 63 DEISAVHQHSYHPSGSKPKSQQTSFQSSPCNKSPKS 98
>AL356472-5|CAH72745.1| 1024|Homo sapiens nuclear transcription
factor, X-box binding 1 protein.
Length = 1024
Score = 31.1 bits (67), Expect = 9.3
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 10/96 (10%)
Query: 142 ELTDVERNFKFLQDKS--IKMQQEDTITKCVVRQ---INRIIMNNLSDNLPHILSTQIDY 196
E V FKF D + I +++++ C ++ NRI N S P LS Q+ Y
Sbjct: 3 EAPPVSGTFKFNTDAAEFIPQEKKNSGLNCGTQRRLDSNRIGRRNYSSPPPCHLSRQVPY 62
Query: 197 D---ARHEAFWHIGGVDPPTTTVKWRKE--NKWPKS 227
D A H+ +H G P + ++ NK PKS
Sbjct: 63 DEISAVHQHSYHPSGSKPKSQQTSFQSSPCNKSPKS 98
>AL356218-4|CAI13305.1| 1120|Homo sapiens nuclear transcription
factor, X-box binding 1 protein.
Length = 1120
Score = 31.1 bits (67), Expect = 9.3
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 10/96 (10%)
Query: 142 ELTDVERNFKFLQDKS--IKMQQEDTITKCVVRQ---INRIIMNNLSDNLPHILSTQIDY 196
E V FKF D + I +++++ C ++ NRI N S P LS Q+ Y
Sbjct: 3 EAPPVSGTFKFNTDAAEFIPQEKKNSGLNCGTQRRLDSNRIGRRNYSSPPPCHLSRQVPY 62
Query: 197 D---ARHEAFWHIGGVDPPTTTVKWRKE--NKWPKS 227
D A H+ +H G P + ++ NK PKS
Sbjct: 63 DEISAVHQHSYHPSGSKPKSQQTSFQSSPCNKSPKS 98
>AL356218-3|CAI13304.1| 1024|Homo sapiens nuclear transcription
factor, X-box binding 1 protein.
Length = 1024
Score = 31.1 bits (67), Expect = 9.3
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 10/96 (10%)
Query: 142 ELTDVERNFKFLQDKS--IKMQQEDTITKCVVRQ---INRIIMNNLSDNLPHILSTQIDY 196
E V FKF D + I +++++ C ++ NRI N S P LS Q+ Y
Sbjct: 3 EAPPVSGTFKFNTDAAEFIPQEKKNSGLNCGTQRRLDSNRIGRRNYSSPPPCHLSRQVPY 62
Query: 197 D---ARHEAFWHIGGVDPPTTTVKWRKE--NKWPKS 227
D A H+ +H G P + ++ NK PKS
Sbjct: 63 DEISAVHQHSYHPSGSKPKSQQTSFQSSPCNKSPKS 98
>AF332009-1|AAK16545.1| 1024|Homo sapiens nuclear transcription
factor NFX2 protein.
Length = 1024
Score = 31.1 bits (67), Expect = 9.3
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 10/96 (10%)
Query: 142 ELTDVERNFKFLQDKS--IKMQQEDTITKCVVRQ---INRIIMNNLSDNLPHILSTQIDY 196
E V FKF D + I +++++ C ++ NRI N S P LS Q+ Y
Sbjct: 3 EAPPVSGTFKFNTDAAEFIPQEKKNSGLNCGTQRRLDSNRIGRRNYSSPPPCHLSRQVPY 62
Query: 197 D---ARHEAFWHIGGVDPPTTTVKWRKE--NKWPKS 227
D A H+ +H G P + ++ NK PKS
Sbjct: 63 DEISAVHQHSYHPSGSKPKSQQTSFQSSPCNKSPKS 98
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.321 0.137 0.419
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,827,258
Number of Sequences: 224733
Number of extensions: 3101061
Number of successful extensions: 5541
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 5510
Number of HSP's gapped (non-prelim): 52
length of query: 496
length of database: 73,234,838
effective HSP length: 93
effective length of query: 403
effective length of database: 52,334,669
effective search space: 21090871607
effective search space used: 21090871607
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 67 (31.1 bits)
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