GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001537-TA|BGIBMGA001537-PA|IPR010793|Ribosomal protein
S30, mitochondrial
         (496 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY122095-1|AAM52607.1|  557|Drosophila melanogaster GH05406p pro...   281   2e-75
AE014298-2224|AAF48515.1|  557|Drosophila melanogaster CG8470-PA...   281   2e-75
AE014297-1196|AAF54554.2|  614|Drosophila melanogaster CG6547-PA...    30   6.4  

>AY122095-1|AAM52607.1|  557|Drosophila melanogaster GH05406p
           protein.
          Length = 557

 Score =  281 bits (689), Expect = 2e-75
 Identities = 135/271 (49%), Positives = 184/271 (67%), Gaps = 12/271 (4%)

Query: 229 HYESTDRPVQYIGFWP-GDIDEFGLLSYHGRGHILDRKTSFGEQDNIEALHCQAMKASFG 287
           H  +T+ P    G+WP G+ + FGLLS+  R H+  R  SFGEQD +EALH  A+K+S+ 
Sbjct: 294 HQHATNVP----GYWPKGNENNFGLLSFQSRAHLQIRPKSFGEQDQLEALHSLAIKSSYA 349

Query: 288 WLLAQANYQGFTTFNDLTYPLVTQTVITNGKLWSLYAYQLNTIVMHNDTVDSNPKHNICF 347
           WLLAQANY GF T+N+LTYP+ TQTVITNG+ WS Y YQLNT+++H   V  NP+ N C 
Sbjct: 350 WLLAQANYNGFNTYNELTYPMNTQTVITNGREWSFYEYQLNTLLLHGTNVAENPRVNFCR 409

Query: 348 GTKPLQLYETIE-NGKVLGLNEDVLIMLLQFYMNAP-VERD-HAMKPYLGKDEKVIADIE 404
           GTKPL LY  I  +GK +  N++ L  LL FY NAP ++R     +PY+  D   ++  E
Sbjct: 410 GTKPLPLYAEISASGKCVDFNDNALRHLLNFYANAPSIQRSIGEQQPYVASD---VSAYE 466

Query: 405 DDNRRCWLEERYKYLVSNRPKHSLIPEVYLWEKIYKIQHNTRFFEAKRRPFERGINPFNR 464
           +  +R ++ + +KYL SNRP+H  +PE+YLWEK+YKI +N R  EAKRR FE  INP+ R
Sbjct: 467 NAEQRDFINKTFKYLASNRPRHLELPEIYLWEKLYKIDNNNRAMEAKRRFFELDINPWQR 526

Query: 465 RLDDHISPYIPKVLR-EYPRSKKKFEATYYP 494
            LD H   Y+P+ +R + P++K +F+ TYYP
Sbjct: 527 TLDTHDKEYVPRAVRPDVPKNKNRFKKTYYP 557



 Score =  140 bits (339), Expect = 4e-33
 Identities = 71/214 (33%), Positives = 120/214 (56%), Gaps = 15/214 (7%)

Query: 40  ILDMTREGKLLRRRQSFQSKIQELNTIEEKQIALNMPRYYGWQCIMLNNDKVPYNAMPLV 99
           I D++ + +  +   ++  +I+++ T+EEK I +NMPRYYG++ +  N+ K+PYNA+PL 
Sbjct: 38  IQDLSFKARKQKDAANWHEEIRQVPTVEEKMIKINMPRYYGFKVVDFNDSKIPYNALPLT 97

Query: 100 QYYTRSHFIPVAKLPEAYNEIEQQASNILQEIKPQIEDAIAIELTDVERNFKFLQD---- 155
           Q+YTR+    +  LP   ++  Q   +  ++ +P ++        DV    +F  D    
Sbjct: 98  QHYTRT---VLEDLPSETDKKAQAKDSEQEQEQPSVDGLFKAARGDVIDALEFAHDYYKH 154

Query: 156 --------KSIKMQQEDTITKCVVRQINRIIMNNLSDNLPHILSTQIDYDARHEAFWHIG 207
                   +S  +++E  +T+ +V Q+NR ++ +LS+   H+    +DY+ RHEAFW +G
Sbjct: 155 LEKQHNSAESNPVERERILTQIIVEQLNRALLQSLSEEYKHLDELDVDYNPRHEAFWAVG 214

Query: 208 GVDPPTTTVKWRKENKWPKSTHYESTDRPVQYIG 241
           GVDPP    K +K  +W K    ES DR VQY G
Sbjct: 215 GVDPPKNVQKSKKGREWQKDMANESVDRMVQYTG 248


>AE014298-2224|AAF48515.1|  557|Drosophila melanogaster CG8470-PA
           protein.
          Length = 557

 Score =  281 bits (689), Expect = 2e-75
 Identities = 135/271 (49%), Positives = 184/271 (67%), Gaps = 12/271 (4%)

Query: 229 HYESTDRPVQYIGFWP-GDIDEFGLLSYHGRGHILDRKTSFGEQDNIEALHCQAMKASFG 287
           H  +T+ P    G+WP G+ + FGLLS+  R H+  R  SFGEQD +EALH  A+K+S+ 
Sbjct: 294 HQHATNVP----GYWPKGNENNFGLLSFQSRAHLQIRPKSFGEQDQLEALHSLAIKSSYA 349

Query: 288 WLLAQANYQGFTTFNDLTYPLVTQTVITNGKLWSLYAYQLNTIVMHNDTVDSNPKHNICF 347
           WLLAQANY GF T+N+LTYP+ TQTVITNG+ WS Y YQLNT+++H   V  NP+ N C 
Sbjct: 350 WLLAQANYNGFNTYNELTYPMNTQTVITNGREWSFYEYQLNTLLLHGTNVAENPRVNFCR 409

Query: 348 GTKPLQLYETIE-NGKVLGLNEDVLIMLLQFYMNAP-VERD-HAMKPYLGKDEKVIADIE 404
           GTKPL LY  I  +GK +  N++ L  LL FY NAP ++R     +PY+  D   ++  E
Sbjct: 410 GTKPLPLYAEISASGKCVDFNDNALRHLLNFYANAPSIQRSIGEQQPYVASD---VSAYE 466

Query: 405 DDNRRCWLEERYKYLVSNRPKHSLIPEVYLWEKIYKIQHNTRFFEAKRRPFERGINPFNR 464
           +  +R ++ + +KYL SNRP+H  +PE+YLWEK+YKI +N R  EAKRR FE  INP+ R
Sbjct: 467 NAEQRDFINKTFKYLASNRPRHLELPEIYLWEKLYKIDNNNRAMEAKRRFFELDINPWQR 526

Query: 465 RLDDHISPYIPKVLR-EYPRSKKKFEATYYP 494
            LD H   Y+P+ +R + P++K +F+ TYYP
Sbjct: 527 TLDTHDKEYVPRAVRPDVPKNKNRFKKTYYP 557



 Score =  140 bits (339), Expect = 4e-33
 Identities = 71/214 (33%), Positives = 120/214 (56%), Gaps = 15/214 (7%)

Query: 40  ILDMTREGKLLRRRQSFQSKIQELNTIEEKQIALNMPRYYGWQCIMLNNDKVPYNAMPLV 99
           I D++ + +  +   ++  +I+++ T+EEK I +NMPRYYG++ +  N+ K+PYNA+PL 
Sbjct: 38  IQDLSFKARKQKDAANWHEEIRQVPTVEEKMIKINMPRYYGFKVVDFNDSKIPYNALPLT 97

Query: 100 QYYTRSHFIPVAKLPEAYNEIEQQASNILQEIKPQIEDAIAIELTDVERNFKFLQD---- 155
           Q+YTR+    +  LP   ++  Q   +  ++ +P ++        DV    +F  D    
Sbjct: 98  QHYTRT---VLEDLPSETDKKAQAKDSEQEQEQPSVDGLFKAARGDVIDALEFAHDYYKH 154

Query: 156 --------KSIKMQQEDTITKCVVRQINRIIMNNLSDNLPHILSTQIDYDARHEAFWHIG 207
                   +S  +++E  +T+ +V Q+NR ++ +LS+   H+    +DY+ RHEAFW +G
Sbjct: 155 LEKQHNSAESNPVERERILTQIIVEQLNRALLQSLSEEYKHLDELDVDYNPRHEAFWAVG 214

Query: 208 GVDPPTTTVKWRKENKWPKSTHYESTDRPVQYIG 241
           GVDPP    K +K  +W K    ES DR VQY G
Sbjct: 215 GVDPPKNVQKSKKGREWQKDMANESVDRMVQYTG 248


>AE014297-1196|AAF54554.2|  614|Drosophila melanogaster CG6547-PA
           protein.
          Length = 614

 Score = 30.3 bits (65), Expect = 6.4
 Identities = 19/76 (25%), Positives = 34/76 (44%)

Query: 265 KTSFGEQDNIEALHCQAMKASFGWLLAQANYQGFTTFNDLTYPLVTQTVITNGKLWSLYA 324
           K S G +     L  + +  +F    A+A      +   L  P+V Q+V T+G+ +    
Sbjct: 292 KNSHGSEVTTSQLQARTLVKAFVVAAARAKQLHGDSVGALPKPIVVQSVQTDGRTFHFGV 351

Query: 325 YQLNTIVMHNDTVDSN 340
            QLNT+ +  ++   N
Sbjct: 352 LQLNTLDLGANSTAKN 367


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.321    0.137    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,922,790
Number of Sequences: 52641
Number of extensions: 1108297
Number of successful extensions: 2177
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2166
Number of HSP's gapped (non-prelim): 5
length of query: 496
length of database: 24,830,863
effective HSP length: 88
effective length of query: 408
effective length of database: 20,198,455
effective search space: 8240969640
effective search space used: 8240969640
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 64 (29.9 bits)