GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001537-TA|BGIBMGA001537-PA|IPR010793|Ribosomal protein
S30, mitochondrial
         (496 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067608-5|AAK95865.1|  523|Caenorhabditis elegans Hypothetical ...    46   6e-05
AF067211-14|AAC16992.2|  412|Caenorhabditis elegans Hypothetical...    31   2.5  
Z81540-5|CAB04405.2|  946|Caenorhabditis elegans Hypothetical pr...    30   3.3  
U58750-6|AAB00646.1| 2049|Caenorhabditis elegans Rod (drosophila...    30   3.3  
AF040643-11|AAQ65204.1|  266|Caenorhabditis elegans Hypothetical...    30   3.3  
AF040643-10|AAB94962.2|  314|Caenorhabditis elegans Hypothetical...    30   3.3  
AF040643-7|AAM98035.1|  314|Caenorhabditis elegans Hypothetical ...    30   4.3  
AF000262-9|AAN60529.1|  820|Caenorhabditis elegans Hypothetical ...    30   4.3  
Z70208-7|CAA94138.1|  183|Caenorhabditis elegans Hypothetical pr...    29   10.0 
U88179-4|AAU05547.1|  576|Caenorhabditis elegans Hypothetical pr...    29   10.0 
U88179-3|AAX88809.1|  751|Caenorhabditis elegans Hypothetical pr...    29   10.0 
U88179-2|AAU05546.1|  770|Caenorhabditis elegans Hypothetical pr...    29   10.0 
U64858-3|AAN84865.1| 1250|Caenorhabditis elegans Roller: helical...    29   10.0 
U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helical...    29   10.0 
AL032640-3|CAA21641.2|  424|Caenorhabditis elegans Hypothetical ...    29   10.0 

>AF067608-5|AAK95865.1|  523|Caenorhabditis elegans Hypothetical
           protein B0511.8 protein.
          Length = 523

 Score = 46.0 bits (104), Expect = 6e-05
 Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 4/94 (4%)

Query: 280 QAMKASFGWLLAQANYQGFTTFNDLTYPLVTQTVITNGKLWSLYAYQLNTIVMHNDTVDS 339
           QA+ + F  L AQA+  GFT + D+T    +Q V+++G  +     QLNTI + N   D 
Sbjct: 402 QAIISMFTTLCAQAHTHGFTQYTDITRSFTSQLVLSDGINFWFAIGQLNTIAI-NVECDG 460

Query: 340 --NPKHNICFGTKPLQLYETIE-NGKVLGLNEDV 370
             NP+ N      P +L++  + NG+ L + E++
Sbjct: 461 FVNPRTNYIRIDGPYRLFDYCDKNGQYLSVQEEI 494


>AF067211-14|AAC16992.2|  412|Caenorhabditis elegans Hypothetical
           protein B0205.6 protein.
          Length = 412

 Score = 30.7 bits (66), Expect = 2.5
 Identities = 14/39 (35%), Positives = 26/39 (66%), Gaps = 3/39 (7%)

Query: 162 QEDTITKCVVRQINRIIMNNLSDNLPHILSTQIDYDARH 200
           +E  + K  V +++++++N +SD LPHI+    + DARH
Sbjct: 268 KEMAMDKAHVERLSQMLINGISDKLPHIIR---NGDARH 303


>Z81540-5|CAB04405.2|  946|Caenorhabditis elegans Hypothetical
           protein F46B3.5 protein.
          Length = 946

 Score = 30.3 bits (65), Expect = 3.3
 Identities = 11/24 (45%), Positives = 14/24 (58%)

Query: 212 PTTTVKWRKENKWPKSTHYESTDR 235
           P     WRK+ ++PK TH ES  R
Sbjct: 253 PRNITNWRKKERYPKGTHCESGKR 276


>U58750-6|AAB00646.1| 2049|Caenorhabditis elegans Rod (drosophila
            roughdeal) homologprotein 1 protein.
          Length = 2049

 Score = 30.3 bits (65), Expect = 3.3
 Identities = 13/38 (34%), Positives = 23/38 (60%)

Query: 170  VVRQINRIIMNNLSDNLPHILSTQIDYDARHEAFWHIG 207
            VV++I R++   L      ++S  +DY  + EAF+H+G
Sbjct: 1124 VVKRIGRVVRETLRRFSFDVISDDLDYLLQLEAFYHLG 1161


>AF040643-11|AAQ65204.1|  266|Caenorhabditis elegans Hypothetical
           protein F14D2.4b protein.
          Length = 266

 Score = 30.3 bits (65), Expect = 3.3
 Identities = 14/58 (24%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 312 TVITNGKLWSLYA-YQLNTIVMHNDTVDSNPKHNICFGTKPLQLYETIENGKVLGLNE 368
           T + + ++WS+++  +L  + +++DT D   K ++CFG    + Y +    + +  NE
Sbjct: 59  TNLKDQEMWSIFSELELKLVSVYSDTRDQKCKIDMCFGHDSGKFYSSYGWSEFISWNE 116


>AF040643-10|AAB94962.2|  314|Caenorhabditis elegans Hypothetical
           protein F14D2.4a protein.
          Length = 314

 Score = 30.3 bits (65), Expect = 3.3
 Identities = 14/58 (24%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 312 TVITNGKLWSLYA-YQLNTIVMHNDTVDSNPKHNICFGTKPLQLYETIENGKVLGLNE 368
           T + + ++WS+++  +L  + +++DT D   K ++CFG    + Y +    + +  NE
Sbjct: 59  TNLKDQEMWSIFSELELKLVSVYSDTRDQKCKIDMCFGHDSGKFYSSYGWSEFISWNE 116


>AF040643-7|AAM98035.1|  314|Caenorhabditis elegans Hypothetical
           protein F14D2.12 protein.
          Length = 314

 Score = 29.9 bits (64), Expect = 4.3
 Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 318 KLWSLYA-YQLNTIVMHNDTVDSNPKHNICFGTKPLQLYETIENGKVLGLNE 368
           ++WS++   +L  I +++DT D   K ++CFG    + Y +    + +  NE
Sbjct: 65  EMWSMFTELELKLISVYSDTRDQKCKTDMCFGHDSGKFYSSYGWSEFISWNE 116


>AF000262-9|AAN60529.1|  820|Caenorhabditis elegans Hypothetical
           protein C48E7.8 protein.
          Length = 820

 Score = 29.9 bits (64), Expect = 4.3
 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 2/83 (2%)

Query: 327 LNTIVMHNDTVDSNPKHNICFGTKPLQLYETIENGKVLGLNEDVLIMLLQFYMNAP--VE 384
           + T  M  DT+    + ++ FG   ++ YE +E G V G + D      Q+       ++
Sbjct: 731 MTTRNMKEDTMKDRMERHVSFGDTEIEKYEVVEEGDVDGNDMDPSENTRQWIETGQLCLQ 790

Query: 385 RDHAMKPYLGKDEKVIADIEDDN 407
           R         ++EK    IEDD+
Sbjct: 791 RSDIDMLCAKQEEKANVKIEDDD 813


>Z70208-7|CAA94138.1|  183|Caenorhabditis elegans Hypothetical
           protein F54B11.6 protein.
          Length = 183

 Score = 28.7 bits (61), Expect = 10.0
 Identities = 10/43 (23%), Positives = 26/43 (60%)

Query: 41  LDMTREGKLLRRRQSFQSKIQELNTIEEKQIALNMPRYYGWQC 83
           LD T+E    +  ++ + +I++L+   ++++A+   + + WQC
Sbjct: 86  LDQTKEELEKKHAENLKEEIEKLSEKHQRELAVAKKKQWCWQC 128


>U88179-4|AAU05547.1|  576|Caenorhabditis elegans Hypothetical
           protein R57.1b protein.
          Length = 576

 Score = 28.7 bits (61), Expect = 10.0
 Identities = 16/54 (29%), Positives = 26/54 (48%)

Query: 200 HEAFWHIGGVDPPTTTVKWRKENKWPKSTHYESTDRPVQYIGFWPGDIDEFGLL 253
           H   W  G +DP + T    +  +    T  E++ +P + I F   D +EFGL+
Sbjct: 368 HFDAWVYGSIDPNSGTAVLAEVARAMMQTINETSWKPARTIVFNAWDAEEFGLI 421


>U88179-3|AAX88809.1|  751|Caenorhabditis elegans Hypothetical
           protein R57.1c protein.
          Length = 751

 Score = 28.7 bits (61), Expect = 10.0
 Identities = 16/54 (29%), Positives = 26/54 (48%)

Query: 200 HEAFWHIGGVDPPTTTVKWRKENKWPKSTHYESTDRPVQYIGFWPGDIDEFGLL 253
           H   W  G +DP + T    +  +    T  E++ +P + I F   D +EFGL+
Sbjct: 368 HFDAWVYGSIDPNSGTAVLAEVARAMMQTINETSWKPARTIVFNAWDAEEFGLI 421


>U88179-2|AAU05546.1|  770|Caenorhabditis elegans Hypothetical
           protein R57.1a protein.
          Length = 770

 Score = 28.7 bits (61), Expect = 10.0
 Identities = 16/54 (29%), Positives = 26/54 (48%)

Query: 200 HEAFWHIGGVDPPTTTVKWRKENKWPKSTHYESTDRPVQYIGFWPGDIDEFGLL 253
           H   W  G +DP + T    +  +    T  E++ +P + I F   D +EFGL+
Sbjct: 387 HFDAWVYGSIDPNSGTAVLAEVARAMMQTINETSWKPARTIVFNAWDAEEFGLI 440


>U64858-3|AAN84865.1| 1250|Caenorhabditis elegans Roller: helically
           twisted, animalsroll when moving protein 3, isoform b
           protein.
          Length = 1250

 Score = 28.7 bits (61), Expect = 10.0
 Identities = 15/66 (22%), Positives = 27/66 (40%)

Query: 302 NDLTYPLVTQTVITNGKLWSLYAYQLNTIVMHNDTVDSNPKHNICFGTKPLQLYETIENG 361
           N   Y L     +   ++ +  A  + T+       D +P + I F      LY  ++NG
Sbjct: 472 NGHVYTLNADNKVYRTEMVAFNATGIETVASLQYLQDMSPSNGIFFDVSKFLLYSALQNG 531

Query: 362 KVLGLN 367
            ++ LN
Sbjct: 532 SMMTLN 537


>U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helically
           twisted, animalsroll when moving protein 3, isoform a
           protein.
          Length = 2456

 Score = 28.7 bits (61), Expect = 10.0
 Identities = 15/66 (22%), Positives = 27/66 (40%)

Query: 302 NDLTYPLVTQTVITNGKLWSLYAYQLNTIVMHNDTVDSNPKHNICFGTKPLQLYETIENG 361
           N   Y L     +   ++ +  A  + T+       D +P + I F      LY  ++NG
Sbjct: 472 NGHVYTLNADNKVYRTEMVAFNATGIETVASLQYLQDMSPSNGIFFDVSKFLLYSALQNG 531

Query: 362 KVLGLN 367
            ++ LN
Sbjct: 532 SMMTLN 537


>AL032640-3|CAA21641.2|  424|Caenorhabditis elegans Hypothetical
           protein Y43F8A.3 protein.
          Length = 424

 Score = 28.7 bits (61), Expect = 10.0
 Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 3/59 (5%)

Query: 313 VITNGKLWSLYAYQLNTIVMHNDTVDSNPKHNICFGTKPLQLYETIENGKVLGLNEDVL 371
           V+TNG +   Y  +++ ++ +  T++S   +N    TK  + +E +EN +   L E V+
Sbjct: 285 VLTNGHVKPDYREKIDKLLTYRTTIESTHTYNT---TKIPKRWEIVENSEAQNLLEKVI 340


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.321    0.137    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,827,492
Number of Sequences: 27539
Number of extensions: 577039
Number of successful extensions: 1345
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1333
Number of HSP's gapped (non-prelim): 16
length of query: 496
length of database: 12,573,161
effective HSP length: 84
effective length of query: 412
effective length of database: 10,259,885
effective search space: 4227072620
effective search space used: 4227072620
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)