GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001537-TA|BGIBMGA001537-PA|IPR010793|Ribosomal protein
S30, mitochondrial
         (496 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g41870.1 68418.m05098 glycoside hydrolase family 28 protein /...    33   0.57 
At5g19400.1 68418.m02312 expressed protein                             31   1.3  
At5g15680.1 68418.m01834 expressed protein                             30   4.1  
At4g03030.1 68417.m00411 kelch repeat-containing F-box family pr...    29   9.4  
At3g04820.1 68416.m00522 expressed protein contains PFam profile...    29   9.4  
At1g77580.2 68414.m09032 myosin heavy chain-related low similari...    29   9.4  
At1g77580.1 68414.m09033 myosin heavy chain-related low similari...    29   9.4  
At1g28420.1 68414.m03494 homeobox transcription factor, putative...    29   9.4  

>At5g41870.1 68418.m05098 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein weak
           similarity to polygalacturonase PG1 [Glycine max]
           GI:5669846; contains PF00295: Glycosyl hydrolases family
           28
          Length = 449

 Score = 32.7 bits (71), Expect = 0.57
 Identities = 13/41 (31%), Positives = 23/41 (56%)

Query: 297 GFTTFNDLTYPLVTQTVITNGKLWSLYAYQLNTIVMHNDTV 337
           G   FN+ T  LV+  V+ N   W+L+    + +V+H+ T+
Sbjct: 183 GLIEFNNSTNILVSHVVLQNSPFWTLHPVYCSNVVVHHVTI 223


>At5g19400.1 68418.m02312 expressed protein
          Length = 1093

 Score = 31.5 bits (68), Expect = 1.3
 Identities = 12/35 (34%), Positives = 21/35 (60%)

Query: 438 IYKIQHNTRFFEAKRRPFERGINPFNRRLDDHISP 472
           + K+  N  +F++K++ F  G+ P +  LD H SP
Sbjct: 569 VIKVDQNHVYFDSKKKKFLVGVKPADDFLDSHSSP 603


>At5g15680.1 68418.m01834 expressed protein 
          Length = 2151

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 11/38 (28%), Positives = 22/38 (57%)

Query: 68   EKQIALNMPRYYGWQCIMLNNDKVPYNAMPLVQYYTRS 105
            E ++ +++     W C+ L  D+V  +A+PL Q Y ++
Sbjct: 1885 ETRLLMHITGLLPWLCLQLTQDQVMVSALPLQQQYQKA 1922


>At4g03030.1 68417.m00411 kelch repeat-containing F-box family
           protein contains Pfam profiles PF01344: Kelch motif,
           PF00646: F-box domain
          Length = 442

 Score = 28.7 bits (61), Expect = 9.4
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 3/24 (12%)

Query: 217 KWRKENKWPKSTHYESTDRPVQYI 240
           +WRKE+  PK  HY   D+PV ++
Sbjct: 353 RWRKESSVPKKAHY---DKPVGFV 373


>At3g04820.1 68416.m00522 expressed protein contains PFam profile
           PF01142: Uncharacterized protein family UPF0024;
           expression supported by MPSS
          Length = 747

 Score = 28.7 bits (61), Expect = 9.4
 Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 1/69 (1%)

Query: 411 WLEERYKYLVSNRPKHSLIPEVYLWEKIYKIQHNTRFFEAKRRPFERGINPFNRRLDDHI 470
           +++E +K+LV++           +  ++    +N R   +K+R  ERG  PF+ R  +H 
Sbjct: 163 FVKENFKFLVTDTVDGPDSTSKCIRVRVNSGANNNRGNRSKKRK-ERGDKPFDSRGSEHW 221

Query: 471 SPYIPKVLR 479
             ++ K LR
Sbjct: 222 PEHVGKFLR 230


>At1g77580.2 68414.m09032 myosin heavy chain-related low similarity
           to SP|P08799 Myosin II heavy chain, non muscle
           {Dictyostelium discoideum}
          Length = 779

 Score = 28.7 bits (61), Expect = 9.4
 Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 1/90 (1%)

Query: 112 KLPEAYNEIEQQASNILQEIKPQIEDAIAIELTDVERNFKFLQDKSIKMQQEDTITKCVV 171
           KL     E+E +     +E   Q+E+++A E+  +    K L++K  K++ E    K  V
Sbjct: 450 KLEAEKVELESEVKCNREEAVAQVENSLATEIEVLTCRIKQLEEKLEKLEVEKDELKSEV 509

Query: 172 RQINRIIMNNLSDNLPHILSTQIDYDARHE 201
           +  NR + + L   L  I   +++ + + E
Sbjct: 510 K-CNREVESTLRFELEAIACEKMELENKLE 538


>At1g77580.1 68414.m09033 myosin heavy chain-related low similarity
           to SP|P08799 Myosin II heavy chain, non muscle
           {Dictyostelium discoideum}
          Length = 629

 Score = 28.7 bits (61), Expect = 9.4
 Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 1/90 (1%)

Query: 112 KLPEAYNEIEQQASNILQEIKPQIEDAIAIELTDVERNFKFLQDKSIKMQQEDTITKCVV 171
           KL     E+E +     +E   Q+E+++A E+  +    K L++K  K++ E    K  V
Sbjct: 416 KLEAEKVELESEVKCNREEAVAQVENSLATEIEVLTCRIKQLEEKLEKLEVEKDELKSEV 475

Query: 172 RQINRIIMNNLSDNLPHILSTQIDYDARHE 201
           +  NR + + L   L  I   +++ + + E
Sbjct: 476 K-CNREVESTLRFELEAIACEKMELENKLE 504


>At1g28420.1 68414.m03494 homeobox transcription factor, putative
            similar to homeobox transcription factor Hox7 GI:19486
            [Lycopersicon peruvianum]
          Length = 1703

 Score = 28.7 bits (61), Expect = 9.4
 Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 4/88 (4%)

Query: 118  NEIEQQASNILQEIKPQIEDAIAIELTDVERNFKFLQDKSIKMQQEDTITKCVVRQINRI 177
            +  ++  S +L E KP  + +  +  +  ER     QD +I   QE+  +K    Q+   
Sbjct: 1030 DSFDRDPSQLLDETKPLEDLSNDLHKSSAERAL-INQDANIS--QENYASKRSRSQLKSY 1086

Query: 178  IMNNLSDNLPHILSTQIDYDARHEAFWH 205
            I +   +  P+  S  +  D RH  +WH
Sbjct: 1087 IGHKAEEVYPY-RSLPLGQDRRHNRYWH 1113


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.321    0.137    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,088,495
Number of Sequences: 28952
Number of extensions: 535549
Number of successful extensions: 1136
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1132
Number of HSP's gapped (non-prelim): 9
length of query: 496
length of database: 12,070,560
effective HSP length: 84
effective length of query: 412
effective length of database: 9,638,592
effective search space: 3971099904
effective search space used: 3971099904
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)