GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001536-TA|BGIBMGA001536-PA|IPR003010|Nitrilase/cyanide
hydratase and apolipoprotein N-acyltransferase
         (385 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25903| Best HMM Match : No HMM Matches (HMM E-Value=.)              91   2e-18
SB_42548| Best HMM Match : DNA_binding_1 (HMM E-Value=5.2)             62   7e-10
SB_8782| Best HMM Match : CN_hydrolase (HMM E-Value=0)                 57   3e-08
SB_11184| Best HMM Match : CN_hydrolase (HMM E-Value=4.4e-10)          47   2e-05
SB_19326| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   2e-04
SB_42741| Best HMM Match : CN_hydrolase (HMM E-Value=4.6e-14)          35   0.097
SB_33972| Best HMM Match : CN_hydrolase (HMM E-Value=1.30321e-43)      35   0.13 
SB_56373| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   2.1  

>SB_25903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 100

 Score = 90.6 bits (215), Expect = 2e-18
 Identities = 37/59 (62%), Positives = 50/59 (84%)

Query: 327 RTPGLSRIKDGLLIAQVDLNLCRQIKDKWGFTMTQRLDLYAQSLNEAIKHDYVPQVVHK 385
           R  GLSR +DGLL+ +VDLNLCRQ+KDKWGF MT RL++YA+SL+EA++ +Y P +VH+
Sbjct: 38  RYHGLSRTRDGLLVTEVDLNLCRQVKDKWGFQMTSRLEMYAKSLSEAVQRNYEPPIVHE 96


>SB_42548| Best HMM Match : DNA_binding_1 (HMM E-Value=5.2)
          Length = 101

 Score = 62.1 bits (144), Expect = 7e-10
 Identities = 34/93 (36%), Positives = 52/93 (55%), Gaps = 1/93 (1%)

Query: 3  SAELTSLDEVISNSLKGKELEEFNRIHYGRIDQCALFISSVAAQKAASNGFEIKAYDFPA 62
          +AE  SL++ +  +L  ++L+E  RI YG      L + + A   AA   FE+  Y   A
Sbjct: 2  AAEFESLNKTLEKNLPAEDLKEVKRILYGN-PVSDLSLPAAAVSVAAELDFELAGYKIDA 60

Query: 63 RKEECRKPRIVRLGLIQHSIAISTDNPITQQRL 95
            EE R+PR+VR+G +Q+ I   T+ PI +Q L
Sbjct: 61 AAEELRQPRLVRIGAVQNKIVEPTNMPIAKQVL 93


>SB_8782| Best HMM Match : CN_hydrolase (HMM E-Value=0)
          Length = 242

 Score = 56.8 bits (131), Expect = 3e-08
 Identities = 49/174 (28%), Positives = 85/174 (48%), Gaps = 21/174 (12%)

Query: 72  IVRLGLIQHSIAISTDNPITQQRLAIFEKVQKIISAAAAEQVNILCLQEAWNMPFAFCTR 131
           + R+GL+Q  +A++ +     QR    EK+++ ++A A     I+ L E +N P+     
Sbjct: 5   VFRIGLVQ--LAVTANKLQNLQRAR--EKIKEAVAAGA----KIVALPECFNSPYG---- 52

Query: 132 EKQPWCDFAEPVLTGPSTVFLAELAVKYDMVIISPILERDDIHGDTIWNTAVVINEFGKV 191
             Q + D+AE +  G S+  LAE+A +    I+   +  +      ++NT++  +  G +
Sbjct: 53  -TQYFKDYAEEI-PGESSNMLAEVAKETGAYIVGGSIP-ERASNRKLYNTSLSYDPSGNL 109

Query: 192 IGKHRKNH-----IPRVGDFNESTYYFEGNTGHPVFETKYGKVAINICYGRHHP 240
           +GKHRK H     +P    F ES     G     + +T+Y K+ I ICY    P
Sbjct: 110 MGKHRKIHLFDIDVPGKIRFQESEVLSPGE-NLTILDTEYCKIGIGICYDMRFP 162


>SB_11184| Best HMM Match : CN_hydrolase (HMM E-Value=4.4e-10)
          Length = 128

 Score = 47.2 bits (107), Expect = 2e-05
 Identities = 37/126 (29%), Positives = 60/126 (47%), Gaps = 13/126 (10%)

Query: 120 EAWNMPFAFCTREKQPWCDFAEPVLTGPSTVFLAELAVKYDMVIISPILERDDIHGDTIW 179
           E +N P+       Q + D+AE +  G S+  LAE+A +    I+   +     +G  ++
Sbjct: 1   ECFNSPYG-----TQYFKDYAEEI-PGESSNMLAEVAKETGAYIVGGSIPERASNGK-LY 53

Query: 180 NTAVVINEFGKVIGKHRKNH-----IPRVGDFNESTYYFEGNTGHPVFETKYGKVAINIC 234
           NT++  +  G ++GKHRK H     +P    F ES     G     + +T+Y K+ I IC
Sbjct: 54  NTSLSYDPSGNLMGKHRKIHLFDIDVPGKIRFQESEVLSPGE-NLTILDTEYCKIGIGIC 112

Query: 235 YGRHHP 240
           Y    P
Sbjct: 113 YDMRFP 118


>SB_19326| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 44.0 bits (99), Expect = 2e-04
 Identities = 36/126 (28%), Positives = 67/126 (53%), Gaps = 15/126 (11%)

Query: 72  IVRLGLIQHSIAISTDNPITQQRLAIFEKVQKIISAAAAEQVNILCLQEAWNMPFAFCTR 131
           + R+GL+Q  +A++ +     QR    EK+++ ++A A     I+ L E +N P+     
Sbjct: 7   VFRIGLVQ--LAVTANKLQNLQRAR--EKIKEAVAAGA----KIVALPECFNSPYG---- 54

Query: 132 EKQPWCDFAEPVLTGPSTVFLAELAVKYDMVIISPILERDDIHGDTIWNTAVVINEFGKV 191
             Q + D+AE +  G S+  LAE+A +    I+   +     +G  ++NT++  +  G +
Sbjct: 55  -TQYFKDYAEEI-PGESSNMLAEVAKETGAYIVGGSIPERASNGK-LYNTSLSYDPSGNL 111

Query: 192 IGKHRK 197
           +GKHRK
Sbjct: 112 MGKHRK 117


>SB_42741| Best HMM Match : CN_hydrolase (HMM E-Value=4.6e-14)
          Length = 255

 Score = 35.1 bits (77), Expect = 0.097
 Identities = 36/157 (22%), Positives = 65/157 (41%), Gaps = 10/157 (6%)

Query: 144 LTGPSTVFLAELAVKYDMVIISPILERDDIHGDTIWNTAVVINEFGKVIGKHRKNHIPRV 203
           + G S  +L + A   D  I+  I+ ++    +  +N  + ++  G  I  + K H   +
Sbjct: 57  MDGNSVSWLKQKAATLDAAIVGSIIIKEQ---ENYYNRLLFVHPTG-TIESYDKRHAFTL 112

Query: 204 GDFNESTYYFEGNTGHPVFETKYGKVAINICYGRHHPLNWLMFGINGAEIVFNPSATVSG 263
              NE   Y  GN    +   K  K+   ICY    P+ W     N   +++  +     
Sbjct: 113 AGENEK--YATGNK-KLIVSYKGWKICPLICYDLRFPV-WSRNVENYDVLMYVANWPKPR 168

Query: 264 LSEHLWAVEARNAAIANSYYTCAINRVGTESFPNEFT 300
           +  H W    +  AI N  Y   +NRVG ++  +E++
Sbjct: 169 I--HAWNTLLKARAIENMSYCIGVNRVGVDANGHEYS 203


>SB_33972| Best HMM Match : CN_hydrolase (HMM E-Value=1.30321e-43)
          Length = 294

 Score = 34.7 bits (76), Expect = 0.13
 Identities = 64/282 (22%), Positives = 117/282 (41%), Gaps = 31/282 (10%)

Query: 96  AIFEKVQKIISAAAAEQVNILCLQEAWNMPFAFCTREKQPWCDFAEPVLTGPSTVFLAEL 155
           A F + Q++I   + +   ++ L E     F F  ++K+   + AE  L GP    + +L
Sbjct: 22  ANFRQCQELIRKGSRKGAEVVFLPEG----FDFLMKDKEKILELAEH-LDGPRISKMCKL 76

Query: 156 AVKYDMVI-ISPILERDDIHGDTIWNTAVVINEFGKVIGKHRKNHIPRVGDFNESTYYFE 214
           A +  + + +     +       + N  VVI+  G++   + K H+    D N      E
Sbjct: 77  AEENGVWLSLGGFHCKHPSETRRVLNCHVVIDNKGRIAASYNKTHL---FDVN-----IE 128

Query: 215 GNTGHPVFETKY---GKVAINICYGRHHPLNWLMFGINGAEIVFNPSATVSGLSEHLWAV 271
           G  G  + E+ +   G   +  CY    P   ++    GA+I+  PSA         W V
Sbjct: 129 G--GPCLKESAFIAHGDRIVPPCYDLRFPEFSMILARQGADILSFPSAFTFHTGSAHWEV 186

Query: 272 EARNAAIANSYYTCAINRV-----GTESFPNEFTSGDGKPAHKDFGHFYGSSYVTAPDGS 326
             R+ AI    Y  A  +      G E++ +    G G+  H +       S V  P G+
Sbjct: 187 LLRSRAIETQCYVVAAAQCGKLYEGREAYGHSMV-GLGRLLH-ECEILVLFSKVVDPWGT 244

Query: 327 RTPGLSRIKD--GLLIAQVDLNLCRQIKDKWGFTMTQRLDLY 366
               +++ +D  GL +A++D    ++++        +R+DLY
Sbjct: 245 ---VVAQCQDGIGLCMAEIDHQYIQKVRSGMPILSHRRVDLY 283


>SB_56373| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 629

 Score = 30.7 bits (66), Expect = 2.1
 Identities = 18/55 (32%), Positives = 26/55 (47%)

Query: 45  AQKAASNGFEIKAYDFPARKEECRKPRIVRLGLIQHSIAISTDNPITQQRLAIFE 99
           A+    N F +  Y   A ++EC K  +  L     SIAI+  N +T + LA  E
Sbjct: 246 AELEKKNSFTLLHYAAQAGQQECLKYLLTALRGANRSIAITDSNGVTPEHLAARE 300


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.136    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,291,321
Number of Sequences: 59808
Number of extensions: 545910
Number of successful extensions: 935
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 927
Number of HSP's gapped (non-prelim): 9
length of query: 385
length of database: 16,821,457
effective HSP length: 83
effective length of query: 302
effective length of database: 11,857,393
effective search space: 3580932686
effective search space used: 3580932686
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)