GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001536-TA|BGIBMGA001536-PA|IPR003010|Nitrilase/cyanide
hydratase and apolipoprotein N-acyltransferase
         (385 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23139-15|AAK31488.1|  387|Caenorhabditis elegans Hypothetical p...   509   e-144
AL132860-12|CAB60517.1|  440|Caenorhabditis elegans Hypothetical...    54   2e-07
AF069986-1|AAC39136.1|  440|Caenorhabditis elegans nitrilase and...    54   2e-07
Z35604-6|CAA84681.1|  305|Caenorhabditis elegans Hypothetical pr...    33   0.45 
AF022981-4|AAG24205.1|  602|Caenorhabditis elegans Hypothetical ...    29   4.2  
AL110485-8|CAB60356.1|  434|Caenorhabditis elegans Hypothetical ...    29   7.3  
AL161712-13|CAC70137.1|  830|Caenorhabditis elegans Hypothetical...    28   9.7  
AF024494-4|AAQ62459.1|  253|Caenorhabditis elegans Hypothetical ...    28   9.7  
AC025716-3|AAK39618.1|  690|Caenorhabditis elegans Hypothetical ...    28   9.7  

>U23139-15|AAK31488.1|  387|Caenorhabditis elegans Hypothetical
           protein F13H8.7 protein.
          Length = 387

 Score =  509 bits (1256), Expect = e-144
 Identities = 233/381 (61%), Positives = 289/381 (75%), Gaps = 1/381 (0%)

Query: 2   ASAELTSLDEVISNSLKGKELEEFNRIHYGRIDQCALFISSVAAQKAASNGFEIKAYDFP 61
           A A+   ++  ++  L G  L+E  RI YGR  + AL ISS+A + A    F++  Y   
Sbjct: 4   APAQFDGVETALAEKLDGVSLDEVERILYGRPYR-ALEISSIAEKLAQDGDFQLSGYIVD 62

Query: 62  ARKEECRKPRIVRLGLIQHSIAISTDNPITQQRLAIFEKVQKIISAAAAEQVNILCLQEA 121
           A+KE+ R PR+VR+  IQ+ I   T + + +QR AI ++V  +I AAA+   N++ LQEA
Sbjct: 63  AQKEQTRAPRLVRVAAIQNKIHRPTTDSVVEQRDAIHQRVGAMIEAAASAGANVIGLQEA 122

Query: 122 WNMPFAFCTREKQPWCDFAEPVLTGPSTVFLAELAVKYDMVIISPILERDDIHGDTIWNT 181
           W MPFAFCTRE+ PW +FAE V TGP+T FL++LAVK+D+VIISPILERD+   D IWNT
Sbjct: 123 WTMPFAFCTRERLPWTEFAESVYTGPTTQFLSKLAVKHDIVIISPILERDEEKDDVIWNT 182

Query: 182 AVVINEFGKVIGKHRKNHIPRVGDFNESTYYFEGNTGHPVFETKYGKVAINICYGRHHPL 241
           AVVI+  G+VIG+ RKNHIPRVGDFNESTYY E   GHPVFETKYG++ INICYGRHHP 
Sbjct: 183 AVVISHTGRVIGRSRKNHIPRVGDFNESTYYMESTLGHPVFETKYGRIGINICYGRHHPQ 242

Query: 242 NWLMFGINGAEIVFNPSATVSGLSEHLWAVEARNAAIANSYYTCAINRVGTESFPNEFTS 301
           NW+M+ +NGAEI+FNPSATV  LSE LW +EARNAAIAN  +T  INRVGTE FPNEFTS
Sbjct: 243 NWMMYALNGAEIIFNPSATVGALSEPLWGIEARNAAIANHVFTVGINRVGTEVFPNEFTS 302

Query: 302 GDGKPAHKDFGHFYGSSYVTAPDGSRTPGLSRIKDGLLIAQVDLNLCRQIKDKWGFTMTQ 361
           G+G+PAHKDFGHFYGSSY+ APDGSRTP LSR+++G+LIA++DLNLCRQ KD WGF MT 
Sbjct: 303 GNGQPAHKDFGHFYGSSYIAAPDGSRTPALSRVREGVLIAELDLNLCRQCKDAWGFRMTN 362

Query: 362 RLDLYAQSLNEAIKHDYVPQV 382
           RLD+YAQ + E    DY P +
Sbjct: 363 RLDMYAQKITEVSNPDYRPDI 383


>AL132860-12|CAB60517.1|  440|Caenorhabditis elegans Hypothetical
           protein Y56A3A.13 protein.
          Length = 440

 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 57/225 (25%), Positives = 89/225 (39%), Gaps = 22/225 (9%)

Query: 154 ELAVKYDMVI-ISPILERDDIHGDTIWNTAVVINEFGKVIGKHRKNH-----IPRVGDFN 207
           ELA K+++ + +  +  +D       WNT ++I+  G    ++ K H     IP      
Sbjct: 83  ELARKHNIWLSLGGLHHKDPSDAAHPWNTHLIIDSDGVTRAEYNKLHLFDLEIPGKVRLM 142

Query: 208 ESTYYFEGNTGHPVFETKYGKVAINICYGRHHPLNWLMFGINGAEIVFNPSATVSGLSEH 267
           ES +   G    P  +T  G++ ++ICY    P   L     GA+++  PSA        
Sbjct: 143 ESEFSKAGTEMIPPVDTPIGRLGLSICYDVRFPELSLWNRKRGAQLLSFPSAFTLNTGLA 202

Query: 268 LWAVEARNAAIANSYYTCAINRVGTESFPNEFTSGDGKPAHKDFGHFYGSSYVTAPDGSR 327
            W    R  AI N  Y  A  + G               AH      YG S V  P G+ 
Sbjct: 203 HWETLLRARAIENQCYVVAAAQTG---------------AHNPKRQSYGHSMVVDPWGAV 247

Query: 328 TPGLSRIKDGLLIAQVDLNLCRQIKDKWGFTMTQRLDLYAQSLNE 372
               S   D +  A++DL+    +++       +R DLY   +NE
Sbjct: 248 VAQCSERVD-MCFAEIDLSYVDTLREMQPVFSHRRSDLYTLHINE 291


>AF069986-1|AAC39136.1|  440|Caenorhabditis elegans nitrilase and
           fragile histidinetriad fusion protein NitFhit protein.
          Length = 440

 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 57/225 (25%), Positives = 89/225 (39%), Gaps = 22/225 (9%)

Query: 154 ELAVKYDMVI-ISPILERDDIHGDTIWNTAVVINEFGKVIGKHRKNH-----IPRVGDFN 207
           ELA K+++ + +  +  +D       WNT ++I+  G    ++ K H     IP      
Sbjct: 83  ELARKHNIWLSLGGLHHKDPSDAAHPWNTHLIIDSDGVTRAEYNKLHLFDLEIPGKVRLM 142

Query: 208 ESTYYFEGNTGHPVFETKYGKVAINICYGRHHPLNWLMFGINGAEIVFNPSATVSGLSEH 267
           ES +   G    P  +T  G++ ++ICY    P   L     GA+++  PSA        
Sbjct: 143 ESEFSKAGTEMIPPVDTPIGRLGLSICYDVRFPELSLWNRKRGAQLLSFPSAFTLNTGLA 202

Query: 268 LWAVEARNAAIANSYYTCAINRVGTESFPNEFTSGDGKPAHKDFGHFYGSSYVTAPDGSR 327
            W    R  AI N  Y  A  + G               AH      YG S V  P G+ 
Sbjct: 203 HWETLLRARAIENQCYVVAAAQTG---------------AHNPKRQSYGHSMVVDPWGAV 247

Query: 328 TPGLSRIKDGLLIAQVDLNLCRQIKDKWGFTMTQRLDLYAQSLNE 372
               S   D +  A++DL+    +++       +R DLY   +NE
Sbjct: 248 VAQCSERVD-MCFAEIDLSYVDTLREMQPVFSHRRSDLYTLHINE 291


>Z35604-6|CAA84681.1|  305|Caenorhabditis elegans Hypothetical
           protein ZK1058.6 protein.
          Length = 305

 Score = 32.7 bits (71), Expect = 0.45
 Identities = 41/160 (25%), Positives = 70/160 (43%), Gaps = 22/160 (13%)

Query: 96  AIFEKVQKIISAAAAEQVNILCLQEA-------WN-MPFAFCTREKQPWCDFA---EPVL 144
           A  EKV+K +  AA     ++   EA       WN       TR  +   +F    E  +
Sbjct: 18  ATLEKVKKNVEEAAGNGAELVLFPEAFIGGYPKWNSFGITMGTRTPEGRKEFKRYFENAI 77

Query: 145 --TGPSTVFLAELAVKYDMVIISPILERDDIHGDTIWNTAVVINEFGKVIGKHRKNHIPR 202
              G  +  +  LA + ++ I+  ++ER+     T++ +    +  G  +GKHRK  +P 
Sbjct: 78  EENGEESKLIESLAAQNNIHIVIGVVERE---ASTLYCSVFFYSPSG-YLGKHRKL-LPT 132

Query: 203 VGDFNESTYYFEGN-TGHPVFETKYGKVAINICYGRHHPL 241
                E   + +G+ +  PVF T  GK+   IC+  + PL
Sbjct: 133 A---LERCVWGQGDGSTMPVFSTSVGKIGSAICWENYMPL 169


>AF022981-4|AAG24205.1|  602|Caenorhabditis elegans Hypothetical
          protein W03F9.10 protein.
          Length = 602

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 5/90 (5%)

Query: 10 DEVISNSLKGKELEEFNRIHYGRIDQCALFISSVAAQKAASNGFEIKAYDFPARKEECRK 69
          D+  + +L  KEL+E  R    +  +      S    KA     EI+  + P ++EE   
Sbjct: 10 DDEANKNLSKKELQELKR----KQQKSKKKKESKKRAKATKQA-EIETREEPKKEEENGD 64

Query: 70 PRIVRLGLIQHSIAISTDNPITQQRLAIFE 99
             V +  I  +I I  DNP  Q   AIF+
Sbjct: 65 DLDVEIDYIGETIEIEPDNPHAQYFSAIFD 94


>AL110485-8|CAB60356.1|  434|Caenorhabditis elegans Hypothetical
           protein Y46G5A.13 protein.
          Length = 434

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 3/66 (4%)

Query: 271 VEARNAAIANSYYTCAINRVGTESFPNEFTSGDGKPAHKDFGHFYGSSYVTAPDGSRTPG 330
           V+  NA I      C+  + G    P+E  SG G     ++G+ YG+S      GS  PG
Sbjct: 308 VQMNNADIGGQIVRCSWGKSGDSGKPSERGSGGG-GGSGNYGYGYGNS--GGGGGSGGPG 364

Query: 331 LSRIKD 336
            S+  +
Sbjct: 365 NSQFSN 370


>AL161712-13|CAC70137.1|  830|Caenorhabditis elegans Hypothetical
           protein Y66D12A.17 protein.
          Length = 830

 Score = 28.3 bits (60), Expect = 9.7
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 3/48 (6%)

Query: 61  PARKEECRKPRIVRL-GLIQHSIAISTDNPITQQRLAIFEKVQKIISA 107
           P +K + R  RIV L  L  H++   T  P+T  ++AIF+ ++ +  A
Sbjct: 2   PPKKAQTR--RIVSLDSLFGHTLLNITGEPVTPTKIAIFQLIRTLFHA 47


>AF024494-4|AAQ62459.1|  253|Caenorhabditis elegans Hypothetical
           protein C38C3.4b protein.
          Length = 253

 Score = 28.3 bits (60), Expect = 9.7
 Identities = 12/36 (33%), Positives = 18/36 (50%)

Query: 336 DGLLIAQVDLNLCRQIKDKWGFTMTQRLDLYAQSLN 371
           + L +  +D  +CR  KDK G   T R D+  +  N
Sbjct: 178 EALKLCLIDYGICRSFKDKSGELKTPRTDIKFRGTN 213


>AC025716-3|AAK39618.1|  690|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.10 protein.
          Length = 690

 Score = 28.3 bits (60), Expect = 9.7
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 21  ELEEFNRIHYGRIDQCALFISSVAAQKAASNGFEIKAYDFPARKEECRKPRIVR 74
           ELE+ N  H    DQC+L +SS    + A    E K        EEC   R+ R
Sbjct: 475 ELEQSNAAHQSLRDQCSLLLSSEDDLRTAHLALESK---MTLVSEECIALRVSR 525


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.136    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,896,787
Number of Sequences: 27539
Number of extensions: 434443
Number of successful extensions: 723
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 715
Number of HSP's gapped (non-prelim): 10
length of query: 385
length of database: 12,573,161
effective HSP length: 83
effective length of query: 302
effective length of database: 10,287,424
effective search space: 3106802048
effective search space used: 3106802048
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)