Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001535-TA|BGIBMGA001535-PA|undefined
         (200 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    27   2.5  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    27   2.5  
SPCC1753.04 |tol1||3'|Schizosaccharomyces pombe|chr 3|||Manual         26   3.3  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    25   5.8  
SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces pombe...    25   5.8  
SPBC18H10.17c |||mitochondrial ribosomal protein subunit Mrp49 |...    25   7.7  

>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 12/40 (30%), Positives = 20/40 (50%)

Query: 98  ADPIMRPVPPEQKAIIYKDIPNFGRKVYLSKRSKIAPEAK 137
           A PI  P+P +        +P++G K+ LS +  I  + K
Sbjct: 863 ATPIPEPIPVDAMPTFTVLVPHYGEKILLSLKEIIREQDK 902


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 14/38 (36%), Positives = 18/38 (47%)

Query: 98  ADPIMRPVPPEQKAIIYKDIPNFGRKVYLSKRSKIAPE 135
           A PI  PVP +        IP++  K+ LS R  I  E
Sbjct: 891 ATPIPEPVPVDNMPTFTVLIPHYAEKILLSLREIIREE 928


>SPCC1753.04 |tol1||3'|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 353

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 1/22 (4%)

Query: 153 EDS-FFRRNPHRCGRVWRLTRD 173
           EDS F R N   C RVW L ++
Sbjct: 74  EDSDFLRENTQTCSRVWELVQE 95


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
           Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)

Query: 106 PPEQKAIIYKDIPNFGRKVY 125
           P EQ A++ K I ++ RKVY
Sbjct: 712 PSEQAAMVQKRIADYSRKVY 731


>SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 230

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 13/52 (25%), Positives = 21/52 (40%)

Query: 63  IPGISFIKKGNSIVDVGLGDPAEDPRLKRSDTDLSADPIMRPVPPEQKAIIY 114
           +P +    + NS+      D   +P L  SD  L +    +P PP    + Y
Sbjct: 68  LPNLMLQDRSNSLERCMEEDREHNPFLSSSDNQLLSRKKRKPTPPPSDGLYY 119


>SPBC18H10.17c |||mitochondrial ribosomal protein subunit Mrp49
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 175

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 10/32 (31%), Positives = 20/32 (62%)

Query: 88  RLKRSDTDLSADPIMRPVPPEQKAIIYKDIPN 119
           R  RS   L++D +  P+P  ++ I+ +++PN
Sbjct: 83  RKYRSVQPLTSDLLKLPIPVRRRKIMRQEVPN 114


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.138    0.438 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,079,704
Number of Sequences: 5004
Number of extensions: 46807
Number of successful extensions: 102
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 96
Number of HSP's gapped (non-prelim): 6
length of query: 200
length of database: 2,362,478
effective HSP length: 69
effective length of query: 131
effective length of database: 2,017,202
effective search space: 264253462
effective search space used: 264253462
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)