Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001535-TA|BGIBMGA001535-PA|undefined
         (200 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1633| Best HMM Match : No HMM Matches (HMM E-Value=.)               43   1e-04
SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_19450| Best HMM Match : GTP_EFTU (HMM E-Value=7.9e-08)              28   6.0  
SB_18464| Best HMM Match : AFG1_ATPase (HMM E-Value=0.48)              28   6.0  
SB_3164| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.0  

>SB_1633| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 182

 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 102 MRPVPPEQKAIIYKDIPNFG--RKVYLSKRSKIAPEAKYYFNECSGWVYGWRLED 154
           MRPV    K ++Y      G  R  YL KR    PE KY F   S W  GW++++
Sbjct: 98  MRPVSSNTKKLLYNGFSALGEGRYQYLEKRKMKKPEQKYEFPITSAWEIGWKIDE 152


>SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 635

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 25/109 (22%), Positives = 42/109 (38%), Gaps = 11/109 (10%)

Query: 88  RLKRSDTDLSADPIMRPVPPEQKAIIYKDIPNFGRKVYLSK-RSKIA-----PEAKY--- 138
           R    D   + + ++ P PPE    + ++I   GR  Y+   R  +      P   Y   
Sbjct: 221 REDNDDCHWTVENVIPPPPPEGH--VEREIYELGRDEYMRNLRESLTHRNTPPPLDYVQA 278

Query: 139 YFNECSGWVYGWRLEDSFFRRNPHRCGRVWRLTRDVKSRTGPHPDPDHY 187
           +   C  W + W L++ +   NP     V    RD   R     +P+H+
Sbjct: 279 HRRACLAWYWDWELDNQYDNDNPPPPPPVGHSLRDEYERDPLAWNPNHH 327


>SB_19450| Best HMM Match : GTP_EFTU (HMM E-Value=7.9e-08)
          Length = 926

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 5/40 (12%)

Query: 69  IKKGNSIVDVGLGDPAEDPRLKRSDTDLSADPIMRPVPPE 108
           +K+G  IV+   G   + PR+ R  +D     IM P+PPE
Sbjct: 842 LKRGGFIVNTRTGKRVKVPRIVRMHSD-----IMEPMPPE 876


>SB_18464| Best HMM Match : AFG1_ATPase (HMM E-Value=0.48)
          Length = 675

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/25 (48%), Positives = 13/25 (52%)

Query: 139 YFNECSGWVYGWRLEDSFFRRNPHR 163
           Y  E    VY WR  D+F RRN  R
Sbjct: 220 YIQEFGALVYHWRQRDNFCRRNNAR 244


>SB_3164| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 623

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 8/45 (17%)

Query: 145 GWVYGWRLE-DSFFRRNPHRCGRVWRLTRDVKSRTGPHPDPDHYK 188
           GW   WR   DS  R + +  G       D++SRTG   DP+ Y+
Sbjct: 386 GWTNDWRERLDSIGRESYYSIG-------DIRSRTGTFEDPNAYR 423


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.138    0.438 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,271,487
Number of Sequences: 59808
Number of extensions: 375117
Number of successful extensions: 696
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 694
Number of HSP's gapped (non-prelim): 5
length of query: 200
length of database: 16,821,457
effective HSP length: 79
effective length of query: 121
effective length of database: 12,096,625
effective search space: 1463691625
effective search space used: 1463691625
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)