GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001535-TA|BGIBMGA001535-PA|undefined
         (200 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    25   0.55 
AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory recept...    23   1.3  
AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory recept...    23   1.3  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   1.7  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   2.9  
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    21   6.7  

>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 24.6 bits (51), Expect = 0.55
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 7   HSNKLKKAATLNREPKDYFESDVLENVMIGGMATIT 42
           HS   +K   +  EP+DY E D++ ++ +   A IT
Sbjct: 208 HSFPFRKTTEIPPEPEDYVE-DLVGHIEVNHSAPIT 242


>AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory receptor
           candidate 18 protein.
          Length = 387

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 108 EQKAIIYKDIPNFGRKVYLSKRSK 131
           E    I KD+   G+K YL KR++
Sbjct: 103 ENMTKIDKDLTELGQKKYLEKRNR 126


>AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory receptor
           candidate 17 protein.
          Length = 372

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 108 EQKAIIYKDIPNFGRKVYLSKRSK 131
           E    I KD+   G+K YL KR++
Sbjct: 103 ENMTKIDKDLTELGQKKYLEKRNR 126


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)

Query: 166  RVWRLTRDVKSRTGPH 181
            R W +TRD + R GP+
Sbjct: 2612 RGWTVTRDPQGRIGPY 2627



 Score = 21.4 bits (43), Expect = 5.1
 Identities = 6/14 (42%), Positives = 10/14 (71%)

Query: 168  WRLTRDVKSRTGPH 181
            W++ RD + R GP+
Sbjct: 2116 WKVVRDRRGRIGPY 2129


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 8/17 (47%), Positives = 10/17 (58%)

Query: 105 VPPEQKAIIYKDIPNFG 121
           VPP     I+ + PNFG
Sbjct: 103 VPPSNPIYIHPESPNFG 119


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 6/25 (24%), Positives = 13/25 (52%)

Query: 5   RIHSNKLKKAATLNREPKDYFESDV 29
           ++H   +K   TLN  P + +  ++
Sbjct: 340 KVHDESIKPLLTLNSVPTEIYNLEI 364


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.138    0.438 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,488
Number of Sequences: 317
Number of extensions: 2393
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 200
length of database: 114,650
effective HSP length: 54
effective length of query: 146
effective length of database: 97,532
effective search space: 14239672
effective search space used: 14239672
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 41 (20.6 bits)