GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001535-TA|BGIBMGA001535-PA|undefined
         (200 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0493 + 18299885-18299892,18300201-18300837,18301254-183016...    31   0.84 
10_02_0105 - 5345149-5347833                                           28   4.5  
02_05_0107 + 25897487-25898059                                         28   4.5  
01_06_1330 - 36361275-36361448,36361778-36361973,36362248-363623...    28   4.5  
06_01_0930 - 7181514-7181756,7181847-7181903,7182656-7182859,718...    28   5.9  
06_03_1180 + 28218386-28218649,28218725-28219202,28219309-282196...    27   7.8  
02_05_1277 - 35408097-35409080                                         27   7.8  

>10_08_0493 +
           18299885-18299892,18300201-18300837,18301254-18301676,
           18301769-18302014,18302124-18302789,18303228-18303283,
           18303367-18303460,18303559-18303738
          Length = 769

 Score = 30.7 bits (66), Expect = 0.84
 Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 2/67 (2%)

Query: 72  GNSIVDVGLGDPAEDPRLKRSDTDLSADPIMRPVPPEQKAIIYKDIPNFGRKVYLSKRSK 131
           G   +D   G PA DP  +R   D S   +    P +        +  F ++ Y S  SK
Sbjct: 521 GRPAIDPPYGRPAIDPPYRRPANDTSYGGLNNDGPRDPYTAY--PVEYFSKREYPSGNSK 578

Query: 132 IAPEAKY 138
           + P A Y
Sbjct: 579 VTPSASY 585


>10_02_0105 - 5345149-5347833
          Length = 894

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/47 (25%), Positives = 27/47 (57%)

Query: 2   KWNRIHSNKLKKAATLNREPKDYFESDVLENVMIGGMATITRDHEVA 48
           ++N ++S+   +A  + RE +D++   ++   +  GM  +  DHE+A
Sbjct: 127 RYNAVNSSTSTEAQPIFREDEDFYAQRLVPPGLDQGMDIVGFDHEIA 173


>02_05_0107 + 25897487-25898059
          Length = 190

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 16/37 (43%), Positives = 20/37 (54%)

Query: 52  RRRKPIRDVKEIPGISFIKKGNSIVDVGLGDPAEDPR 88
           RRR   R ++E PG +   KG   V VG G+P E  R
Sbjct: 93  RRRGSERLLEESPGEATTPKGQVAVYVGGGEPGESMR 129


>01_06_1330 -
           36361275-36361448,36361778-36361973,36362248-36362325,
           36362685-36362807,36363206-36363463,36363914-36364073,
           36364702-36364812,36365159-36365429,36365514-36365663,
           36366383-36367090
          Length = 742

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 6/59 (10%)

Query: 118 PNFGRKVYLSKRSKIAPEAKYYFNECSGWVYG----WRLEDSFFRRNPH--RCGRVWRL 170
           P   RKV +  +  I   A+     C G +YG    W L     R  P+  RCGRV R+
Sbjct: 672 PYASRKVLMCDKPMIGASAEAKAVTCMGQIYGLERQWVLRKPNRRTEPNRRRCGRVVRV 730


>06_01_0930 -
           7181514-7181756,7181847-7181903,7182656-7182859,
           7182937-7183266
          Length = 277

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 10/25 (40%), Positives = 13/25 (52%)

Query: 175 KSRTGPHPDPDHYKDSDPPGPTKCL 199
           K +  P P P+ Y D   P P +CL
Sbjct: 4   KPKRKPPPSPEPYHDHPSPSPAQCL 28


>06_03_1180 +
           28218386-28218649,28218725-28219202,28219309-28219697,
           28219785-28220426,28220466-28221368
          Length = 891

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 4/68 (5%)

Query: 61  KEIPGISFIKKGNSIVD----VGLGDPAEDPRLKRSDTDLSADPIMRPVPPEQKAIIYKD 116
           KE+  +  +   N++VD      +GD  E     R+D DL A     PV   +K+   K 
Sbjct: 414 KEVASLYVVAPANTVVDEDCSTQVGDTVETTNPLRADRDLVAKKAKTPVNAAEKSEAGKS 473

Query: 117 IPNFGRKV 124
             + G ++
Sbjct: 474 AADGGVRI 481


>02_05_1277 - 35408097-35409080
          Length = 327

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 1/75 (1%)

Query: 69  IKKGNSIVDVGLGDPAEDPRLKRSDTDLSADPIMRPVPPEQKAIIYKDIPNFGRKVYLSK 128
           + +G ++VD     PA  P        L+A P   P PP+   ++ K      RK   + 
Sbjct: 46  LAQGAAVVDSKPSTPAPPPPPPAQPPVLAA-PAPAPPPPQPPVVVVKSERYTSRKYTEAA 104

Query: 129 RSKIAPEAKYYFNEC 143
            +     A +Y  EC
Sbjct: 105 TTADGVRAGFYVYEC 119


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.138    0.438 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,316,542
Number of Sequences: 37544
Number of extensions: 328477
Number of successful extensions: 635
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 629
Number of HSP's gapped (non-prelim): 9
length of query: 200
length of database: 14,793,348
effective HSP length: 79
effective length of query: 121
effective length of database: 11,827,372
effective search space: 1431112012
effective search space used: 1431112012
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)