GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001535-TA|BGIBMGA001535-PA|undefined
         (200 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    24   1.1  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   3.5  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   6.1  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.0  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.0  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   8.0  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 12/39 (30%), Positives = 20/39 (51%)

Query: 82  DPAEDPRLKRSDTDLSADPIMRPVPPEQKAIIYKDIPNF 120
           D A++  +   + DLS +   R +  EQ   +YK  PN+
Sbjct: 422 DHAKNTIIDYRNNDLSINEEKRTIENEQLNRMYKSYPNY 460


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 10/52 (19%)

Query: 122 RKVYLSKRSKIAPEAKYYFNE---CSGWVYGWRLEDSFFRRNPHRCGRVWRL 170
           R+V +     IAP   + +N+   C G         S +R    +CGR+W L
Sbjct: 93  REVSIDGNPLIAPYPNWSYNDVKYCDGLT-------SVYRMQVDKCGRLWIL 137


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 5/39 (12%)

Query: 82  DPAEDPRLKRSDTDLSADPI-----MRPVPPEQKAIIYK 115
           +PAE   L  S +     P+     ++P+ PEQ+ +I++
Sbjct: 303 EPAEAESLSTSGSSGILTPVSPYGYVKPISPEQEELIHR 341


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic
          acetylcholine receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 8/37 (21%), Positives = 20/37 (54%)

Query: 44 DHEVAGYNRRRKPIRDVKEIPGISFIKKGNSIVDVGL 80
          D  ++ YN+  +P+ +  ++  +    K + ++DV L
Sbjct: 34 DDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNL 70


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic
          acetylcholine receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 8/37 (21%), Positives = 20/37 (54%)

Query: 44 DHEVAGYNRRRKPIRDVKEIPGISFIKKGNSIVDVGL 80
          D  ++ YN+  +P+ +  ++  +    K + ++DV L
Sbjct: 34 DDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNL 70


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic
          acetylcholine receptor alpha3subunit protein.
          Length = 566

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 9/37 (24%), Positives = 20/37 (54%)

Query: 44 DHEVAGYNRRRKPIRDVKEIPGISFIKKGNSIVDVGL 80
          D  ++ YN+  +P+ +V +   +    K + ++DV L
Sbjct: 30 DDLLSNYNKLVRPVVNVTDALTVKIKLKLSQLIDVNL 66


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.138    0.438 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,868
Number of Sequences: 429
Number of extensions: 3290
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 6
length of query: 200
length of database: 140,377
effective HSP length: 55
effective length of query: 145
effective length of database: 116,782
effective search space: 16933390
effective search space used: 16933390
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 42 (21.0 bits)