Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001535-TA|BGIBMGA001535-PA|undefined
(200 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g25050.1 68415.m02996 formin homology 2 domain-containing pro... 30 1.2
At2g36980.1 68415.m04535 pentatricopeptide (PPR) repeat-containi... 29 2.1
At5g39785.2 68418.m04819 expressed protein 29 2.8
At5g39785.1 68418.m04818 expressed protein 29 2.8
At4g14310.2 68417.m02205 peroxisomal membrane protein-related co... 29 2.8
At4g14310.1 68417.m02204 peroxisomal membrane protein-related co... 29 2.8
At3g30560.1 68416.m03867 hypothetical protein 29 2.8
At5g64500.1 68418.m08103 membrane protein-related contains weak ... 28 4.9
At4g21070.1 68417.m03047 BRCT domain-containing protein / zinc f... 28 4.9
At5g36840.1 68418.m04414 hypothetical protein similar to At3g243... 27 6.5
At4g13650.1 68417.m02123 pentatricopeptide (PPR) repeat-containi... 27 8.6
At3g09180.1 68416.m01090 expressed protein 27 8.6
>At2g25050.1 68415.m02996 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02128
Length = 1111
Score = 29.9 bits (64), Expect = 1.2
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 56 PIRDVKEIPGISFIKKGNSIVDVGLGDPAEDPRLKRSDTDLSADPIMRPVPPEQ 109
PI ++ P S NSI G P P L+ + LS+ P+ P+PP++
Sbjct: 579 PISSLRSTPSPS--STSNSIATQGPPPPPPPPPLQSHRSALSSSPLPPPLPPKK 630
>At2g36980.1 68415.m04535 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 625
Score = 29.1 bits (62), Expect = 2.1
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 52 RRRKPIRDVKEIPGISFIKKGNSIVDVGLGDPAEDPRLKRSDTDLS 97
RR R +K+ PG S+I+ GN + +GD + PRL+ L+
Sbjct: 567 RREMVERGMKKTPGCSWIEVGNQVSTFVVGD-SSHPRLEELSETLN 611
>At5g39785.2 68418.m04819 expressed protein
Length = 607
Score = 28.7 bits (61), Expect = 2.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 163 RCGRVWRLTRDVKSRTGPHPDPDHYKDSD 191
RC ++ D KSRT +PDH +DS+
Sbjct: 478 RCDKLTSSIHDQKSRTKSQIEPDHEEDSE 506
>At5g39785.1 68418.m04818 expressed protein
Length = 606
Score = 28.7 bits (61), Expect = 2.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 163 RCGRVWRLTRDVKSRTGPHPDPDHYKDSD 191
RC ++ D KSRT +PDH +DS+
Sbjct: 478 RCDKLTSSIHDQKSRTKSQIEPDHEEDSE 506
>At4g14310.2 68417.m02205 peroxisomal membrane protein-related
contains weak similarity to Peroxisomal membrane protein
2 (22 kDa peroxisomal membrane protein)
(Swiss-Prot:P42925) [Mus musculus]
Length = 965
Score = 28.7 bits (61), Expect = 2.8
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 54 RKPIRDVKEIPGISFIKKGNSIVDVGLGDPAE-DPRLKRSDTDLSADPIMRPVPPEQKAI 112
+KP+R V +P S K N + L +P+L + P++RPVP K+
Sbjct: 70 KKPLRSVTPLPISS--KNSNPALQKSLSSKENPNPKLSHRSFGSTQKPVLRPVPRIDKSA 127
Query: 113 I 113
+
Sbjct: 128 V 128
>At4g14310.1 68417.m02204 peroxisomal membrane protein-related
contains weak similarity to Peroxisomal membrane protein
2 (22 kDa peroxisomal membrane protein)
(Swiss-Prot:P42925) [Mus musculus]
Length = 1087
Score = 28.7 bits (61), Expect = 2.8
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 54 RKPIRDVKEIPGISFIKKGNSIVDVGLGDPAE-DPRLKRSDTDLSADPIMRPVPPEQKAI 112
+KP+R V +P S K N + L +P+L + P++RPVP K+
Sbjct: 70 KKPLRSVTPLPISS--KNSNPALQKSLSSKENPNPKLSHRSFGSTQKPVLRPVPRIDKSA 127
Query: 113 I 113
+
Sbjct: 128 V 128
>At3g30560.1 68416.m03867 hypothetical protein
Length = 1473
Score = 28.7 bits (61), Expect = 2.8
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 66 ISFIKKGNSIVDVGLGDPAEDP--RLKRSDTDLSADPIMRPVPPEQKAIIYKDIPNF 120
++F +KG + V G+ AE R+ +T +A + PE ++Y+ IPNF
Sbjct: 776 LTFHEKGKQPIYVKEGETAESVLYRVNDDETQFTAWFELNKRDPEAAKLLYEQIPNF 832
>At5g64500.1 68418.m08103 membrane protein-related contains weak
similarity to spinster type IV (GI:12003976) [Drosophila
melanogaster]
Length = 484
Score = 27.9 bits (59), Expect = 4.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 79 GLGDPAEDPRLKRSDTDLSADPIMRP 104
G GD ++PR+ D+D DPI P
Sbjct: 5 GEGDRGQNPRIMERDSDSIKDPISEP 30
>At4g21070.1 68417.m03047 BRCT domain-containing protein / zinc
finger (C3HC4-type RING finger) family protein (BRCA1)
contains Pfam profiles PF00533: BRCA1 C Terminus (BRCT)
domain, PF00097: Zinc finger, C3HC4 type (RING finger),
PF01535: PPR repeat; identical to cDNA BRCA1 GI:28372473
Length = 1276
Score = 27.9 bits (59), Expect = 4.9
Identities = 12/31 (38%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 53 RRKPIRD-VKEIPGISFIKKGNSIVDVGLGD 82
R++ +RD VK++PG S ++ GN + + +GD
Sbjct: 202 RKQMLRDGVKKVPGHSLVEVGNRVHEFLMGD 232
>At5g36840.1 68418.m04414 hypothetical protein similar to At3g24380,
At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
At2g05560, At4g08880, At1g34730, At1g27790
Length = 434
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 68 FIKKGNSIVDVGLGDPAEDPRLKRSDTDLSADPIMRPVP 106
F+ +I+ V +P++ PRLK + SA+P R VP
Sbjct: 226 FVDVHGAIMRVEYTNPSKPPRLKNNAFPTSANPSNRVVP 264
>At4g13650.1 68417.m02123 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 1064
Score = 27.1 bits (57), Expect = 8.6
Identities = 13/50 (26%), Positives = 27/50 (54%)
Query: 33 VMIGGMATITRDHEVAGYNRRRKPIRDVKEIPGISFIKKGNSIVDVGLGD 82
V++ + +++ + R++ + VK+ PG S+I+ NSI +GD
Sbjct: 899 VLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGD 948
>At3g09180.1 68416.m01090 expressed protein
Length = 402
Score = 27.1 bits (57), Expect = 8.6
Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 66 ISFIKKGNSIVDVGLGDPAEDPR-LKRSDTDLSADPIMRPVPPEQKAIIYKDIPNFGRK- 123
++++K+ NS+ G DP E + + +S + L + ++ ++ A+I P+ R
Sbjct: 219 LNWLKRANSLPGSGSDDPTEASKPIFQSSSKLRSG--LQTEVVDKIAVIELSFPSLFRAI 276
Query: 124 VYLSKRSKIAPEAKYYFNECSGWVY 148
V LS + P+A +F+ G Y
Sbjct: 277 VSLSPAGSVDPDAVAFFSPDEGGSY 301
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.138 0.438
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,797,004
Number of Sequences: 28952
Number of extensions: 259797
Number of successful extensions: 601
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 594
Number of HSP's gapped (non-prelim): 12
length of query: 200
length of database: 12,070,560
effective HSP length: 78
effective length of query: 122
effective length of database: 9,812,304
effective search space: 1197101088
effective search space used: 1197101088
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 57 (27.1 bits)
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