GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001534-TA|BGIBMGA001534-PA|IPR001522|Fatty acid
desaturase, type 1, IPR005804|Fatty acid desaturase
         (160 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    22   2.2  
AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    22   2.2  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    20   8.8  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    20   8.8  

>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
          homeodomain protein protein.
          Length = 232

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 9/24 (37%), Positives = 11/24 (45%)

Query: 4  SLYQWVRDHRIHHKFSDTDADPHN 27
          SL     D  + H+ SD D D  N
Sbjct: 18 SLLSKKEDEEVEHRLSDRDDDDEN 41


>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 9/16 (56%), Positives = 9/16 (56%)

Query: 97  FPFDYKAAEHFDFFNF 112
           FPFDYK    FD   F
Sbjct: 154 FPFDYKQPVVFDLVYF 169


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 8/31 (25%), Positives = 11/31 (35%)

Query: 123 IGWAYDLKEATPEMINAIAKKLGDGTPVHFP 153
           I W Y      P    +I        P+H+P
Sbjct: 133 IAWPYAAVYTDPAFAASIFHAAATSLPLHYP 163


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)

Query: 40  LMMKKNNEVILRGKQIDM 57
           ++M KN  +IL G+ I M
Sbjct: 825 VLMLKNRYIILNGRLIKM 842


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.325    0.141    0.461 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,959
Number of Sequences: 317
Number of extensions: 2059
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 160
length of database: 114,650
effective HSP length: 52
effective length of query: 108
effective length of database: 98,166
effective search space: 10601928
effective search space used: 10601928
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 40 (20.2 bits)