GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001534-TA|BGIBMGA001534-PA|IPR001522|Fatty acid
desaturase, type 1, IPR005804|Fatty acid desaturase
         (160 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    77   1e-15
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce...    29   0.44 
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p...    27   1.8  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    26   2.3  
SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit S...    26   3.1  
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    25   4.1  
SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2 |Schizos...    25   4.1  
SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|...    25   7.1  
SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein L10...    25   7.1  
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    25   7.1  

>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 77.0 bits (181), Expect = 1e-15
 Identities = 29/72 (40%), Positives = 50/72 (69%), Gaps = 3/72 (4%)

Query: 4   SLYQWVRDHRIHHKFSDTDADPHNANRGLFFSHIGWLMMKKNNEVILRGKQIDMSDIEND 63
           S+  W RDHR HH+++DTD DP+N  +G +++H+GW+++ +N   I R    D+SD+ +D
Sbjct: 139 SIRWWSRDHRAHHRYTDTDKDPYNVKKGFWYAHVGWMIILQNPRRIGRS---DVSDLNSD 195

Query: 64  PFLRFYDKNIVP 75
           PF+ F  ++ +P
Sbjct: 196 PFVMFNHRHFLP 207



 Score = 47.6 bits (108), Expect = 9e-07
 Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 76  AENRFVS-ICTLGEGWHNYHHAFPFDYKAAEHFDFFNFGTKFIKLFEKIGWAYDL 129
           A N F++ + TLGEG HNYHHAFP DY+    +  ++    FI +    G AY+L
Sbjct: 268 ARNHFITALVTLGEGNHNYHHAFPNDYRNGLRWYEYDPTKIFIYIASLFGLAYNL 322


>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 28.7 bits (61), Expect = 0.44
 Identities = 13/29 (44%), Positives = 16/29 (55%)

Query: 108 DFFNFGTKFIKLFEKIGWAYDLKEATPEM 136
           DFFNF TKF++LF       D +   P M
Sbjct: 335 DFFNFQTKFLELFPNEAGRGDERRVIPYM 363


>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1028

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 49  ILRGKQIDMSDIENDPFLRF-YDKNIVPAENRFVSICTLGEGWHNYHHAFPFDYKAAEHF 107
           ++ G  +D     N+  L F ++ +  P+E   +      E + ++H+   F Y A E +
Sbjct: 723 VIYGSVLDYEATRNNILLHFGFEIHCAPSEEELIE---REEAFKDFHNMLSFKYSANEIY 779

Query: 108 DF 109
           +F
Sbjct: 780 EF 781


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 3/45 (6%)

Query: 70   DKNIVPAENRFVSICTL--GEGWHNYHHAFPFDY-KAAEHFDFFN 111
            +KN     N  V + T+  GEGW++  H +   Y       DF+N
Sbjct: 1429 NKNFRSIRNALVLLFTMTFGEGWNDVMHDYTISYPNCVNGDDFYN 1473


>SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit
           Sfc6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 582

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 11/44 (25%), Positives = 19/44 (43%)

Query: 29  NRGLFFSHIGWLMMKKNNEVILRGKQIDMSDIENDPFLRFYDKN 72
           N G+  S + WL   K  + +  G  +  S+     F+R   +N
Sbjct: 204 NTGIPLSSVSWLPTNKETQFLAVGGMLKFSETTESVFMRTSGRN 247


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 10/29 (34%), Positives = 18/29 (62%), Gaps = 1/29 (3%)

Query: 59  DIENDPFLRFYDKNIVPAENRFV-SICTL 86
           ++ N+  L FYD N   + NR + ++CT+
Sbjct: 459 ELTNEMALEFYDLNTKASRNRLIKALCTI 487


>SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 980

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 9/23 (39%), Positives = 16/23 (69%)

Query: 63  DPFLRFYDKNIVPAENRFVSICT 85
           + F+R +++NI+   NR V+ CT
Sbjct: 252 ETFVRLHEENIIYRANRLVNWCT 274


>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 532

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 8/23 (34%), Positives = 14/23 (60%)

Query: 48  VILRGKQIDMSDIENDPFLRFYD 70
           +++ G +IDM+   NDP    Y+
Sbjct: 303 LLIEGSRIDMASHNNDPIAHVYE 325


>SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 4/74 (5%)

Query: 74  VPAENRFVSICTLGEGWHNYHHAFPFDYKAAEHFDFFNFGTKFIKLFEKIGWAYDLKEAT 133
           VP  N  +SIC LG+  H+   A      A    D      K  KL +K+   YD   A+
Sbjct: 57  VPRPN--MSICILGDA-HDLDRAKHGGVDAMSVDDLKKLN-KNKKLVKKLAKKYDAFIAS 112

Query: 134 PEMINAIAKKLGDG 147
             +I  I + LG G
Sbjct: 113 EVLIKQIPRLLGPG 126


>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 100 DYKAAEHFDFFNFGTKFIKLFEKIGWAYDLKEATPEMINAIAKKLGDGTPVHFPI 154
           D K  + +    F  K  ++F K+  +  + E   ++   I   L DG PV F +
Sbjct: 400 DLKRTKTYTKAEFAAKREEIFNKL--SMPVYEPLKDLSECIGNVLADGEPVQFSV 452


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.325    0.141    0.461 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 876,535
Number of Sequences: 5004
Number of extensions: 39015
Number of successful extensions: 105
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 98
Number of HSP's gapped (non-prelim): 11
length of query: 160
length of database: 2,362,478
effective HSP length: 68
effective length of query: 92
effective length of database: 2,022,206
effective search space: 186042952
effective search space used: 186042952
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 50 (24.2 bits)