GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001534-TA|BGIBMGA001534-PA|IPR001522|Fatty acid
desaturase, type 1, IPR005804|Fatty acid desaturase
         (160 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0353 - 12856385-12857705,12858007-12858959                       31   0.44 
04_03_0623 - 18109311-18109853,18109900-18110495,18111292-181114...    29   2.3  
05_05_0262 - 23666184-23666262,23666564-23667759                       28   3.1  
01_05_0444 + 22298490-22298598,22299847-22300108,22302420-223025...    28   4.1  
01_05_0801 + 25353708-25353914,25354307-25354429,25355035-253552...    27   5.4  
04_03_0618 - 18071612-18072795,18073007-18073072,18074101-180741...    27   7.1  
05_04_0193 + 18939869-18939988,18940714-18941012,18941078-189411...    27   9.4  

>05_03_0353 - 12856385-12857705,12858007-12858959
          Length = 757

 Score = 31.1 bits (67), Expect = 0.44
 Identities = 25/89 (28%), Positives = 34/89 (38%), Gaps = 2/89 (2%)

Query: 52  GKQIDMSDIENDPFLRFYDKNIVPAENRFVS-ICTLG-EGWHNYHHAFPFDYKAAEHFDF 109
           G+Q  MS+   D FLR     I+P  + + S +C     G H   +    D K       
Sbjct: 490 GQQKKMSEKAEDAFLRMKTDGIMPTSSTYTSLLCAYAVNGLHEKAYLTYVDMKREGLKPS 549

Query: 110 FNFGTKFIKLFEKIGWAYDLKEATPEMIN 138
               T  I +F + G    L E    MIN
Sbjct: 550 LETYTALIDMFRRAGDTEKLMETWRSMIN 578


>04_03_0623 -
           18109311-18109853,18109900-18110495,18111292-18111493,
           18111616-18111814,18112091-18112191
          Length = 546

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 40  LMMKKNNEVILRGKQI--DMSDIENDPFLRFYDKN-IVPAENRFVSICTLGEG 89
           LM K+     L G Q+  DM +IEN+   + YD++ I  A   F  +  +GEG
Sbjct: 197 LMRKRGEYFNLHGGQLLTDMMNIENNISFKLYDRDEIELATKGFDKMSIIGEG 249


>05_05_0262 - 23666184-23666262,23666564-23667759
          Length = 424

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 84  CTL-GEGWHNYHHAFPFDYKAAEHFDFFNFGTKFIKLFEKIGWA 126
           C L G   H + H  P D +AA +F  ++ G  F+  +  + +A
Sbjct: 68  CALAGCATHGFGHPLPADARAARYFGAYDGGWVFVCFYRTLDYA 111


>01_05_0444 +
           22298490-22298598,22299847-22300108,22302420-22302516,
           22302633-22302647,22302775-22302831,22303481-22303557,
           22303688-22303967
          Length = 298

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 9/26 (34%), Positives = 16/26 (61%)

Query: 3   NSLYQWVRDHRIHHKFSDTDADPHNA 28
           N + ++ R  +++H F   D DPHN+
Sbjct: 254 NMIDRFSRHAKVYHSFDSVDDDPHNS 279


>01_05_0801 +
           25353708-25353914,25354307-25354429,25355035-25355205,
           25355303-25355392,25355497-25355583,25355664-25355719,
           25355812-25355905,25356032-25356144,25356211-25356283,
           25356603-25356683,25356865-25356951,25357031-25357135,
           25357279-25357385,25357481-25357541,25357931-25358158,
           25359720-25360677,25360816-25360997,25361237-25361326,
           25361422-25361709,25361844-25362056,25362560-25362784
          Length = 1212

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 7/102 (6%)

Query: 52  GKQIDMSDIE-NDPFLRFYDKNIVPAEN----RFVSICTLGEGWHNYHHAFPF-DYKAAE 105
           G+QI  S     +   RF    I+P  N       +I   G+ WH + +A  F DY   E
Sbjct: 716 GRQIGRSGNHLKEQLSRFCPLKIIPLWNFRGHSGNAIVEFGKDWHGFRNALAFEDYFGKE 775

Query: 106 HFDFFNFGTKFIKLFEKIGWAYDLKEAT-PEMINAIAKKLGD 146
            +   ++  K  +     GW    ++ T P +I    +K GD
Sbjct: 776 GYGRRDWKEKQNQGSNLFGWVARAEDHTSPGLIGDHLRKNGD 817


>04_03_0618 -
           18071612-18072795,18073007-18073072,18074101-18074175,
           18074234-18074963
          Length = 684

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 40  LMMKKNNEVILRGKQI--DMSDIENDPFLRFYDK-NIVPAENRFVSICTLGEG 89
           +M K+     L G Q+  DM +IEN+   + YD+ +I  A   F     +GEG
Sbjct: 320 IMRKRGEYFHLHGGQLLTDMMNIENNISFKLYDRDDIELATKGFDKTSIIGEG 372


>05_04_0193 +
           18939869-18939988,18940714-18941012,18941078-18941186,
           18941874-18941999,18942178-18942218,18942614-18942744,
           18943218-18943291,18944215-18944450,18944543-18944863,
           18945023-18945086
          Length = 506

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 1   MYNSLYQWVRDHRIHHKFSDTDADPHNANRGLFFSHIGWLM---MKKNNEVILRGKQIDM 57
           M   L   +RD  I    +DT +      +GL F H  W++   MK NN +I    Q+ +
Sbjct: 98  METDLEAVIRDRNIVLSPADTKSYIQMMLKGLAFCHKKWVLHRDMKPNNLLIGADGQLKL 157

Query: 58  SD 59
           +D
Sbjct: 158 AD 159


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.325    0.141    0.461 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,213,613
Number of Sequences: 37544
Number of extensions: 215204
Number of successful extensions: 475
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 473
Number of HSP's gapped (non-prelim): 7
length of query: 160
length of database: 14,793,348
effective HSP length: 77
effective length of query: 83
effective length of database: 11,902,460
effective search space: 987904180
effective search space used: 987904180
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 56 (26.6 bits)