GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001533-TA|BGIBMGA001533-PA|IPR003599|Immunoglobulin
subtype, IPR003598|Immunoglobulin subtype 2,
IPR007110|Immunoglobulin-like, IPR013151|Immunoglobulin
         (335 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    27   2.8  
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    26   6.6  
SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    26   6.6  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    26   8.7  

>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 11/34 (32%), Positives = 19/34 (55%)

Query: 191  PPVITINGDDSHDMKDRFYKAGSAIKLSCILSEE 224
            PP +T+ G  SHD +D ++ +      + IL +E
Sbjct: 1266 PPKVTVVGSTSHDSQDAYFDSDVLDDNTLILEQE 1299


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1441

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 12/54 (22%), Positives = 25/54 (46%), Gaps = 5/54 (9%)

Query: 150  FQYPNNWRLSMNPVKRSDAGHYMCQISTHPPRTIFTNLTVLPPVITINGDDSHD 203
            F+Y N W     P K+   G  +  I+ HP + ++   + +P    +  +D ++
Sbjct: 1010 FEYDNKW-----PYKKVSLGKQINGIAYHPTKMVYAVGSAVPIEFKVTDEDGNE 1058


>SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr
          2|||Manual
          Length = 359

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 3/45 (6%)

Query: 15 RTNGVRRRRSEEKDSLALSREIFKNI---TKQLRENIKREGATDK 56
          RTN  RRR S ++  L++S     NI    ++ ++N+++  A D+
Sbjct: 5  RTNAKRRRLSSKQGGLSISEGKESNIPSVVEESKDNLEQASADDR 49


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 18/68 (26%), Positives = 28/68 (41%)

Query: 156 WRLSMNPVKRSDAGHYMCQISTHPPRTIFTNLTVLPPVITINGDDSHDMKDRFYKAGSAI 215
           +  SM P +     H     ++HP      N + +PPV TI  +  H    +  KA  + 
Sbjct: 234 YHASMAPKRSGSWRHTNFHSTSHPRAASIGNKSGIPPVPTIPPNIGHSTDHQHPKANISG 293

Query: 216 KLSCILSE 223
            L+   SE
Sbjct: 294 SLTKSSSE 301


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.134    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,199,532
Number of Sequences: 5004
Number of extensions: 41076
Number of successful extensions: 90
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 88
Number of HSP's gapped (non-prelim): 4
length of query: 335
length of database: 2,362,478
effective HSP length: 73
effective length of query: 262
effective length of database: 1,997,186
effective search space: 523262732
effective search space used: 523262732
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 54 (25.8 bits)