GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001533-TA|BGIBMGA001533-PA|IPR003599|Immunoglobulin
subtype, IPR003598|Immunoglobulin subtype 2,
IPR007110|Immunoglobulin-like, IPR013151|Immunoglobulin
         (335 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0961 + 29715938-29716034,29716918-29717133,29717438-297177...    33   0.32 
11_06_0390 - 23060034-23060399,23060486-23060573,23061767-230618...    31   0.99 
07_03_0149 - 14452654-14452666,14452943-14454699,14454886-144549...    29   4.0  
11_06_0478 + 24073295-24074172,24074790-24075090                       29   5.3  
04_01_0567 - 7263744-7263922,7264020-7264259,7264919-7264982,726...    29   7.0  
01_03_0260 - 14323503-14323603,14323751-14323990,14324212-143242...    29   7.0  
03_06_0619 - 35136435-35136728,35137155-35137358,35137476-351376...    28   9.2  

>04_04_0961 +
           29715938-29716034,29716918-29717133,29717438-29717776,
           29718247-29719274,29719465-29719551,29719636-29720043,
           29720394-29720558,29720742-29721036,29721131-29721345,
           29721838-29722143,29722474-29722537,29722644-29722883,
           29722959-29723062
          Length = 1187

 Score = 33.1 bits (72), Expect = 0.32
 Identities = 11/40 (27%), Positives = 26/40 (65%)

Query: 89  YFEEEKYTQVTAHVGAEALLNCRVVMLKDKTVMWLRNTTD 128
           Y  ++ ++ V AH G++   +C + +LKDKT++++ +  +
Sbjct: 541 YLFDDPFSAVDAHTGSQLFKDCLMGILKDKTILYVTHQVE 580


>11_06_0390 -
           23060034-23060399,23060486-23060573,23061767-23061843,
           23062971-23063057
          Length = 205

 Score = 31.5 bits (68), Expect = 0.99
 Identities = 15/35 (42%), Positives = 17/35 (48%)

Query: 151 QYPNNWRLSMNPVKRSDAGHYMCQISTHPPRTIFT 185
           Q P +    M P     AGHYM Q+   PPRT  T
Sbjct: 77  QNPGSRPQMMQPGATPGAGHYMSQVPMFPPRTPLT 111


>07_03_0149 -
           14452654-14452666,14452943-14454699,14454886-14454990,
           14455808-14455978,14456309-14456641,14456900-14457492,
           14458864-14458906
          Length = 1004

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 20  RRRRSEEKDSLALSREIFKNITKQLRENIKREGATDKTDHLLQTKVEDTRNYAPYQSY 77
           R+RR  E  +L +  +   N+ K  R+N + + A D    L QT V   +N  P QSY
Sbjct: 236 RKRRKSEPTTL-VDGDGGTNLGKGKRKNHQNQAAVDSILDLQQTVVPLQQNDVPSQSY 292


>11_06_0478 + 24073295-24074172,24074790-24075090
          Length = 392

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 12/32 (37%), Positives = 20/32 (62%)

Query: 139 PYTGDSRIAVKFQYPNNWRLSMNPVKRSDAGH 170
           PY G S++ V F + ++W+LS+  +K S   H
Sbjct: 318 PYLGKSKMGVSFGFIHDWQLSIWILKESTYQH 349


>04_01_0567 -
           7263744-7263922,7264020-7264259,7264919-7264982,
           7265088-7265393,7265652-7265866,7266195-7266489,
           7266596-7266655,7267091-7267717,7268510-7268596,
           7269292-7269612,7270051-7270224,7272806-7275022
          Length = 1594

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 12/40 (30%), Positives = 21/40 (52%)

Query: 89  YFEEEKYTQVTAHVGAEALLNCRVVMLKDKTVMWLRNTTD 128
           Y  ++ ++ V AH G+     C   MLK KT++ + +  D
Sbjct: 885 YLLDDVFSAVDAHTGSSIFKECLRGMLKGKTILLVTHQVD 924


>01_03_0260 -
           14323503-14323603,14323751-14323990,14324212-14324275,
           14324349-14324654,14324841-14325055,14325551-14325845,
           14325965-14326129,14326324-14327352,14333553-14333814,
           14334135-14334631,14338714-14340123
          Length = 1527

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 12/40 (30%), Positives = 23/40 (57%)

Query: 89  YFEEEKYTQVTAHVGAEALLNCRVVMLKDKTVMWLRNTTD 128
           Y  ++ ++ V AH G++   +C    L+DKTV+ + +  D
Sbjct: 811 YLLDDVFSAVDAHTGSDIFRDCVRGALRDKTVLLVTHQLD 850


>03_06_0619 -
           35136435-35136728,35137155-35137358,35137476-35137646,
           35137902-35138050,35138380-35138527,35138614-35138682,
           35138767-35139027,35139223-35139417,35139772-35139888,
           35140026-35140961
          Length = 847

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 12/35 (34%), Positives = 16/35 (45%)

Query: 139 PYTGDSRIAVKFQYPNNWRLSMNPVKRSDAGHYMC 173
           P TG+    V+     NWR  ++P      GH MC
Sbjct: 773 PETGECVRRVREMAEENWRAYVSPEMEETKGHLMC 807


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.319    0.134    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,411,512
Number of Sequences: 37544
Number of extensions: 248974
Number of successful extensions: 484
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 477
Number of HSP's gapped (non-prelim): 7
length of query: 335
length of database: 14,793,348
effective HSP length: 82
effective length of query: 253
effective length of database: 11,714,740
effective search space: 2963829220
effective search space used: 2963829220
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)