Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001533-TA|BGIBMGA001533-PA|IPR003599|Immunoglobulin
subtype, IPR003598|Immunoglobulin subtype 2,
IPR007110|Immunoglobulin-like, IPR013151|Immunoglobulin
(335 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42560| Best HMM Match : ig (HMM E-Value=2.4e-06) 33 0.44
SB_10900| Best HMM Match : I-set (HMM E-Value=0) 32 0.76
SB_43084| Best HMM Match : ig (HMM E-Value=9.7e-23) 31 1.0
SB_1691| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_23461| Best HMM Match : DUF504 (HMM E-Value=0.0038) 30 3.1
SB_10883| Best HMM Match : ig (HMM E-Value=7.00649e-43) 30 3.1
SB_59088| Best HMM Match : AlaDh_PNT_N (HMM E-Value=4.3e-07) 29 4.1
SB_8818| Best HMM Match : I-set (HMM E-Value=0) 29 4.1
SB_17403| Best HMM Match : I-set (HMM E-Value=0) 29 5.4
SB_31699| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.1
SB_15415| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.1
SB_2143| Best HMM Match : ig (HMM E-Value=1.9e-09) 29 7.1
SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
SB_29566| Best HMM Match : HypA (HMM E-Value=0.38) 28 9.4
>SB_42560| Best HMM Match : ig (HMM E-Value=2.4e-06)
Length = 360
Score = 32.7 bits (71), Expect = 0.44
Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 11/83 (13%)
Query: 92 EEKYTQVTAHVGAEALLNCRVVMLKDKTVMWLRNTTDSAQLLTVGPAPYTGDSR-IAVKF 150
E K+T +G+ L C + K TV W +N G T + R IA K
Sbjct: 48 ELKHTDYVMKIGSRIKLKCAPLPEKKTTVEWFKN----------GEVLRTREGRIIARKK 97
Query: 151 QYPNNWRLSMNPVKRSDAGHYMC 173
+ N RL + +K SD G Y C
Sbjct: 98 KKRKNQRLIIRDIKPSDEGCYSC 120
>SB_10900| Best HMM Match : I-set (HMM E-Value=0)
Length = 1642
Score = 31.9 bits (69), Expect = 0.76
Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 15/96 (15%)
Query: 96 TQVTAHVGAEALLNCRVVMLKDKTVMWLRNTTDSAQLLTVGPAPYTGDSRIAVKFQYPNN 155
T + HVG EA+ +C +V W N D P +G +F N
Sbjct: 125 TGTSPHVGQEAIFHCIATANPSPSVSW-TNPFDQ-------PINRSG------RFTVYGN 170
Query: 156 WRLSMNPVKRSDAGHYMCQIS-THPPRTIFTNLTVL 190
L ++ VK++D G+Y C +S + F LTVL
Sbjct: 171 GSLVISDVKKADTGYYTCIVSNSFGSAKAFAQLTVL 206
>SB_43084| Best HMM Match : ig (HMM E-Value=9.7e-23)
Length = 960
Score = 31.5 bits (68), Expect = 1.0
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 11/102 (10%)
Query: 125 NTTDSAQLL---TVGPAPYTGDSRIAVKFQYPNNWRLSMNPVKRSDAGHYMC----QIST 177
N T++A+L+ T P P +R K L+ + VK SD G Y+C I +
Sbjct: 132 NKTNTAELMCSATGNPKPNVTWTRSGKKDVLGTGETLTFSNVKISDGGCYVCTATNNIGS 191
Query: 178 HPPRTIFTNLTVLPPVITINGDDSHDMKDRFYKAGSAIKLSC 219
T+ + P I G +S++++ + G+AI L+C
Sbjct: 192 GASGTVCLTVRYKPVHTNITGVESYNVR----QCGAAISLTC 229
>SB_1691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 481
Score = 30.3 bits (65), Expect = 2.3
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 105 EALLNCRVVMLKDKTVMWLRNTTDSAQ--LLTVGPAPYTGDSRIAVKFQYPNNWRL 158
E+++NC M++D T+ W R T A L TV +P+ V+F + WRL
Sbjct: 317 ESIVNCLDQMVEDNTLKWDRKTLTEASGFLNTVTSSPFLAAFE-TVRFSF--RWRL 369
>SB_23461| Best HMM Match : DUF504 (HMM E-Value=0.0038)
Length = 657
Score = 29.9 bits (64), Expect = 3.1
Identities = 16/51 (31%), Positives = 25/51 (49%)
Query: 17 NGVRRRRSEEKDSLALSREIFKNITKQLRENIKREGATDKTDHLLQTKVED 67
NGV +SEEK + L E+ +N + + + G T ++ L KV D
Sbjct: 198 NGVNGNQSEEKSEMFLLEELERNDEAESQVRNSKTGKTSGPNYFLAVKVCD 248
>SB_10883| Best HMM Match : ig (HMM E-Value=7.00649e-43)
Length = 1280
Score = 29.9 bits (64), Expect = 3.1
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 11/102 (10%)
Query: 125 NTTDSAQLL---TVGPAPYTGDSRIAVKFQYPNNWRLSMNPVKRSDAGHYMC----QIST 177
N T++A+L+ T P P +R K L+ + VK SD G Y+C I +
Sbjct: 990 NKTNTAELMCSATGNPKPNVTWTRSGKKDVLGTGETLTFSNVKISDGGCYVCTATNNIGS 1049
Query: 178 HPPRTIFTNLTVLPPVITINGDDSHDMKDRFYKAGSAIKLSC 219
T+ + P I G +S+ ++ + G+AI L+C
Sbjct: 1050 GASGTVCLTVRYKPVHTNITGVESYIVR----QCGAAISLTC 1087
>SB_59088| Best HMM Match : AlaDh_PNT_N (HMM E-Value=4.3e-07)
Length = 217
Score = 29.5 bits (63), Expect = 4.1
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 11 PEDYRTNGVRRRRSEEKDSLALSREIFKNITKQLRENIKREGA 53
P D T GV + S + +A+S E KN TKQ + + EGA
Sbjct: 142 PYDQLTIGVPKEMSANERRVAISPEAVKNYTKQGFKVVIEEGA 184
>SB_8818| Best HMM Match : I-set (HMM E-Value=0)
Length = 2787
Score = 29.5 bits (63), Expect = 4.1
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 158 LSMNPVKRSDAGHYMCQISTHPPRTIFTNLTVLPPVITINGDDSHDMKDRFYK 210
L++ DAGHY C+ +T TI T L ++ + DD KDR K
Sbjct: 1637 LTLTDASLDDAGHYRCESTTKLGTTISTFLIIVK--VEWLKDDKPIAKDRHLK 1687
>SB_17403| Best HMM Match : I-set (HMM E-Value=0)
Length = 671
Score = 29.1 bits (62), Expect = 5.4
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 137 PAPYTGDSRIAVKFQYPNNWRLSMNPVKRSDAGHYMCQISTHPPRTIFTNLTV---LPPV 193
PAP S+++ L +N + RS++G Y+C S + N T+ PP
Sbjct: 271 PAPSISWSKMSSGVTIATGEHLVINNINRSESGDYLCTASNGVLGSALANATINVQYPPF 330
Query: 194 ITI 196
I +
Sbjct: 331 IEV 333
>SB_31699| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6119
Score = 28.7 bits (61), Expect = 7.1
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 158 LSMNPVKRSDAGHYMCQISTHPPRTIFTNLTVLPPVITINGDD 200
L ++PV++ D G YMC IS L + P+++ +G+D
Sbjct: 4820 LKISPVEKKDEGLYMCVISNKAGTADCEALLTVEPMVS-DGED 4861
>SB_15415| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1390
Score = 28.7 bits (61), Expect = 7.1
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 149 KFQYPNNWRLSMNPVKRSDAGHYMCQIS-THPPRTIFTNLTV-LPP 192
K+ + NN L + +++ D G YMC S T +T+ L V +PP
Sbjct: 754 KYTHFNNGSLKIMNLEKEDTGKYMCTASNTLGKQTVMRRLRVQIPP 799
>SB_2143| Best HMM Match : ig (HMM E-Value=1.9e-09)
Length = 306
Score = 28.7 bits (61), Expect = 7.1
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 11/102 (10%)
Query: 125 NTTDSAQLL---TVGPAPYTGDSRIAVKFQYPNNWRLSMNPVKRSDAGHYMC----QIST 177
N T++A+L T P P +R + L+ + VK SD G Y+C I +
Sbjct: 132 NKTNTAELTCSATGNPTPNVTWTRSGKENVLGTGETLTFSDVKISDGGCYVCTATNNIGS 191
Query: 178 HPPRTIFTNLTVLPPVITINGDDSHDMKDRFYKAGSAIKLSC 219
T+ + P I G +S++++ + G+AI L+C
Sbjct: 192 GASGTVCLTVQYKPVHTNIAGVESYNVR----QCGAAISLTC 229
>SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1705
Score = 28.3 bits (60), Expect = 9.4
Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Query: 154 NNWRLSMNPVKRSDAGHYMCQISTHPPRTIFTNLTVLPPVITINGDDSHDMKDRFYKAGS 213
NN+ S + + S+ HY I+ +T+ T T P ++S++ D +Y G
Sbjct: 1115 NNYAASTSNINNSNNKHYNINITQQQQQTLVTTATATPAT-----NNSNNNSDSYYNHGC 1169
Query: 214 AI 215
+
Sbjct: 1170 LV 1171
>SB_29566| Best HMM Match : HypA (HMM E-Value=0.38)
Length = 701
Score = 28.3 bits (60), Expect = 9.4
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 10/60 (16%)
Query: 95 YTQVTAHVGAEALLNCRVVMLKDKTVMWLRNTTDSAQLLTVGPAPYTGDSRIAVKFQYPN 154
Y QV H G ++++N ++V R + LL V PYT +R + KF YPN
Sbjct: 150 YEQVNLHDGTDSIIN--------ESVNMPRRSMSGLLLLFV--EPYTAGARDSEKFVYPN 199
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.319 0.134 0.406
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,862,256
Number of Sequences: 59808
Number of extensions: 306442
Number of successful extensions: 1203
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1185
Number of HSP's gapped (non-prelim): 32
length of query: 335
length of database: 16,821,457
effective HSP length: 82
effective length of query: 253
effective length of database: 11,917,201
effective search space: 3015051853
effective search space used: 3015051853
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)
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