GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001533-TA|BGIBMGA001533-PA|IPR003599|Immunoglobulin
subtype, IPR003598|Immunoglobulin subtype 2,
IPR007110|Immunoglobulin-like, IPR013151|Immunoglobulin
         (335 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g60970.1 68416.m06823 ABC transporter family protein ABC tran...    33   0.20 
At3g60160.1 68416.m06717 ABC transporter family protein similar ...    33   0.20 
At4g04970.1 68417.m00722 callose synthase, putative / 1,3-beta-g...    29   3.3  
At5g16020.1 68418.m01873 stress protein-related contains weak si...    28   7.7  
At1g79280.1 68414.m09242 expressed protein weak similarity to Nu...    28   7.7  

>At3g60970.1 68416.m06823 ABC transporter family protein ABC
           transporter-like proteins
          Length = 1037

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 13/40 (32%), Positives = 25/40 (62%)

Query: 89  YFEEEKYTQVTAHVGAEALLNCRVVMLKDKTVMWLRNTTD 128
           Y  ++ ++ V AH G E   +C + +LKDKTV+++ +  +
Sbjct: 360 YLLDDPFSAVDAHTGRELFEDCLMGILKDKTVLYVTHQVE 399


>At3g60160.1 68416.m06717 ABC transporter family protein similar to
           ATP-binding cassette transporter MRP8 GI:18031899 from
           [Arabidopsis thaliana]
          Length = 1490

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 13/40 (32%), Positives = 25/40 (62%)

Query: 89  YFEEEKYTQVTAHVGAEALLNCRVVMLKDKTVMWLRNTTD 128
           Y  ++ ++ V AH G E   +C + +LKDKTV+++ +  +
Sbjct: 776 YLLDDPFSAVDAHTGRELFEDCLMGILKDKTVLYVTHQVE 815


>At4g04970.1 68417.m00722 callose synthase, putative /
           1,3-beta-glucan synthase, putative similar to callose
           synthase 1 catalytic subunit GI:13649388 from
           [Arabidopsis thaliana]
          Length = 1768

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 14  YRTNGVRRRRSEEKDSLALSREIFKNITKQLRENIKREGATDKTDHLLQTKVEDTRNYAP 73
           YR   +R    +   +L   + I+++      E ++REGA ++ D +   KV D R +A 
Sbjct: 917 YRQEMLRAENEDGISTLFYLQRIYEDEWVNFLERMRREGAENEND-IWSKKVRDLRLWAS 975

Query: 74  YQ 75
           Y+
Sbjct: 976 YR 977


>At5g16020.1 68418.m01873 stress protein-related contains weak
           similarity to Swiss-Prot:P18899 stress protein (DNA
           damage-responsive protein 48) (DDRP 48) (YP 75)
           (Flocculent specific protein) [Saccharomyces cerevisiae]
          Length = 641

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 14/32 (43%), Positives = 18/32 (56%)

Query: 33  SREIFKNITKQLRENIKREGATDKTDHLLQTK 64
           SREI K IT+   E+   E A DK   L+Q +
Sbjct: 490 SREIDKTITRLQNESTANESAVDKIGDLIQKR 521


>At1g79280.1 68414.m09242 expressed protein weak similarity to
            Nucleoprotein TPR (Swiss-Prot:P12270) [Homo sapiens]
          Length = 2111

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 14   YRTNGVRRRRSEEKDSLALSREIFKNITKQLRENIKREGATDKTDHLLQTKVED 67
            Y  N  +R+  +EKD L+   +   ++ KQL E  +  G    TD +++  V++
Sbjct: 1462 YTLNMTKRKYEKEKDELSKQNQ---SLAKQLEEAKEEAGKRTTTDAVVEQSVKE 1512


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.319    0.134    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,145,774
Number of Sequences: 28952
Number of extensions: 210110
Number of successful extensions: 494
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 491
Number of HSP's gapped (non-prelim): 5
length of query: 335
length of database: 12,070,560
effective HSP length: 81
effective length of query: 254
effective length of database: 9,725,448
effective search space: 2470263792
effective search space used: 2470263792
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)