Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001532-TA|BGIBMGA001532-PA|undefined
         (122 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g50590.1 68416.m05533 transducin family protein / WD-40 repea...    28   2.0  
At3g19520.1 68416.m02475 expressed protein contains Pfam profile...    27   4.6  
At3g15730.1 68416.m01993 phospholipase D alpha 1 / PLD alpha 1 (...    26   6.1  
At1g74360.1 68414.m08615 leucine-rich repeat transmembrane prote...    26   6.1  
At5g61820.1 68418.m07757 expressed protein MtN19, Medicago trunc...    26   8.1  

>At3g50590.1 68416.m05533 transducin family protein / WD-40 repeat
           family protein contains 3 WD-40 repeats (PF00400); some
           similarity to s-tomosyn isoform (GI:4689231)[Rattus
           norvegicus]; contains non-consensus AT-AC splice sites
           at intron 18
          Length = 1606

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 5/82 (6%)

Query: 29  SHAIRHMHTKASAKAYLALFFPVTYKLELGDMEKTCQFLTNTKCP--IPSGQEVHFS--- 83
           S A+R +++  S+ A +A+    T +    + E+TC   +  K    I S  EVH +   
Sbjct: 62  SPAVRMLYSPTSSNAVVAILEDCTIRSCDFETEQTCVLHSPEKRSEHISSDTEVHLAVTP 121

Query: 84  LEILIEDDFPKNQQLTVEFIIE 105
           L+ ++   FPK   +TV   +E
Sbjct: 122 LQPVVFFGFPKRMSVTVVGTVE 143


>At3g19520.1 68416.m02475 expressed protein contains Pfam profile
           PF04776: Protein of unknown function (DUF626)
          Length = 312

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 10/88 (11%)

Query: 32  IRHMHTKASAKAYLALFFPVTYKLELGDMEKTCQFLTNTKCPIPSGQEVHFSLEILI--- 88
           I H H +A+A  +     P    +  GD+    +F    KC + S   +   LE+ +   
Sbjct: 149 IHHFHCEAAADDFYKGALPDWPSV--GDLNNQKRFYMVKKCELQSNDWIRLYLELAVGVR 206

Query: 89  -----EDDFPKNQQLTVEFIIEDQDNKP 111
                E D  K Q L V    +++D +P
Sbjct: 207 YQQTSESDLSKLQVLKVAIETKEEDVQP 234


>At3g15730.1 68416.m01993 phospholipase D alpha 1 / PLD alpha 1
           (PLDALPHA1) (PLD1) / choline phosphatase 1 identical to
           SP:Q38882 Phospholipase D alpha 1 (EC 3.1.4.4)
           (AtPLDalpha1) (PLD alpha 1) (Choline phosphatase 1)
           (Phosphatidylcholine-hydrolyzing phospholipase D 1)
           (PLDalpha) [Arabidopsis thaliana]
          Length = 810

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/45 (24%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 48  FFPVTYKLELGDMEKTCQFLTNTKCPIPSGQEVHFSLEIL-IEDD 91
           + PV   +   ++++  + L N + PI  G ++H  L+   +E+D
Sbjct: 110 YIPVDQVINGEEVDQWVEILDNDRNPIQGGSKIHVKLQYFHVEED 154


>At1g74360.1 68414.m08615 leucine-rich repeat transmembrane protein
           kinase, putative similar to brassinosteroid insensitive
           1 GB:AAC49810 (putative receptor protein kinase);
           contains Pfam profiles: PF00560 Leucine Rich Repeat (17
           repeats), PF00069 Eukaryotic protein kinase domain
          Length = 1106

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/35 (37%), Positives = 22/35 (62%)

Query: 74  IPSGQEVHFSLEILIEDDFPKNQQLTVEFIIEDQD 108
           + S +EV  SL+  +E   P+N+ L  E+ +E+QD
Sbjct: 38  LDSDREVLLSLKSYLESRNPQNRGLYTEWKMENQD 72


>At5g61820.1 68418.m07757 expressed protein MtN19, Medicago
           truncatula, EMBL:MTY15367
          Length = 475

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/46 (23%), Positives = 24/46 (52%)

Query: 18  IVVIQGTDVDKSHAIRHMHTKASAKAYLALFFPVTYKLELGDMEKT 63
           I++++   + +S  +RH     S     + + P  Y +E+G+ E+T
Sbjct: 132 IILVKNGGLCRSLTLRHFFGLGSETRETSTYVPDPYAIEIGNPEET 177


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.325    0.139    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,827,941
Number of Sequences: 28952
Number of extensions: 105912
Number of successful extensions: 255
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 253
Number of HSP's gapped (non-prelim): 5
length of query: 122
length of database: 12,070,560
effective HSP length: 73
effective length of query: 49
effective length of database: 9,957,064
effective search space: 487896136
effective search space used: 487896136
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 54 (25.8 bits)