BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001532-TA|BGIBMGA001532-PA|undefined (122 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g50590.1 68416.m05533 transducin family protein / WD-40 repea... 28 2.0 At3g19520.1 68416.m02475 expressed protein contains Pfam profile... 27 4.6 At3g15730.1 68416.m01993 phospholipase D alpha 1 / PLD alpha 1 (... 26 6.1 At1g74360.1 68414.m08615 leucine-rich repeat transmembrane prote... 26 6.1 At5g61820.1 68418.m07757 expressed protein MtN19, Medicago trunc... 26 8.1 >At3g50590.1 68416.m05533 transducin family protein / WD-40 repeat family protein contains 3 WD-40 repeats (PF00400); some similarity to s-tomosyn isoform (GI:4689231)[Rattus norvegicus]; contains non-consensus AT-AC splice sites at intron 18 Length = 1606 Score = 27.9 bits (59), Expect = 2.0 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 5/82 (6%) Query: 29 SHAIRHMHTKASAKAYLALFFPVTYKLELGDMEKTCQFLTNTKCP--IPSGQEVHFS--- 83 S A+R +++ S+ A +A+ T + + E+TC + K I S EVH + Sbjct: 62 SPAVRMLYSPTSSNAVVAILEDCTIRSCDFETEQTCVLHSPEKRSEHISSDTEVHLAVTP 121 Query: 84 LEILIEDDFPKNQQLTVEFIIE 105 L+ ++ FPK +TV +E Sbjct: 122 LQPVVFFGFPKRMSVTVVGTVE 143 >At3g19520.1 68416.m02475 expressed protein contains Pfam profile PF04776: Protein of unknown function (DUF626) Length = 312 Score = 26.6 bits (56), Expect = 4.6 Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 10/88 (11%) Query: 32 IRHMHTKASAKAYLALFFPVTYKLELGDMEKTCQFLTNTKCPIPSGQEVHFSLEILI--- 88 I H H +A+A + P + GD+ +F KC + S + LE+ + Sbjct: 149 IHHFHCEAAADDFYKGALPDWPSV--GDLNNQKRFYMVKKCELQSNDWIRLYLELAVGVR 206 Query: 89 -----EDDFPKNQQLTVEFIIEDQDNKP 111 E D K Q L V +++D +P Sbjct: 207 YQQTSESDLSKLQVLKVAIETKEEDVQP 234 >At3g15730.1 68416.m01993 phospholipase D alpha 1 / PLD alpha 1 (PLDALPHA1) (PLD1) / choline phosphatase 1 identical to SP:Q38882 Phospholipase D alpha 1 (EC 3.1.4.4) (AtPLDalpha1) (PLD alpha 1) (Choline phosphatase 1) (Phosphatidylcholine-hydrolyzing phospholipase D 1) (PLDalpha) [Arabidopsis thaliana] Length = 810 Score = 26.2 bits (55), Expect = 6.1 Identities = 11/45 (24%), Positives = 24/45 (53%), Gaps = 1/45 (2%) Query: 48 FFPVTYKLELGDMEKTCQFLTNTKCPIPSGQEVHFSLEIL-IEDD 91 + PV + ++++ + L N + PI G ++H L+ +E+D Sbjct: 110 YIPVDQVINGEEVDQWVEILDNDRNPIQGGSKIHVKLQYFHVEED 154 >At1g74360.1 68414.m08615 leucine-rich repeat transmembrane protein kinase, putative similar to brassinosteroid insensitive 1 GB:AAC49810 (putative receptor protein kinase); contains Pfam profiles: PF00560 Leucine Rich Repeat (17 repeats), PF00069 Eukaryotic protein kinase domain Length = 1106 Score = 26.2 bits (55), Expect = 6.1 Identities = 13/35 (37%), Positives = 22/35 (62%) Query: 74 IPSGQEVHFSLEILIEDDFPKNQQLTVEFIIEDQD 108 + S +EV SL+ +E P+N+ L E+ +E+QD Sbjct: 38 LDSDREVLLSLKSYLESRNPQNRGLYTEWKMENQD 72 >At5g61820.1 68418.m07757 expressed protein MtN19, Medicago truncatula, EMBL:MTY15367 Length = 475 Score = 25.8 bits (54), Expect = 8.1 Identities = 11/46 (23%), Positives = 24/46 (52%) Query: 18 IVVIQGTDVDKSHAIRHMHTKASAKAYLALFFPVTYKLELGDMEKT 63 I++++ + +S +RH S + + P Y +E+G+ E+T Sbjct: 132 IILVKNGGLCRSLTLRHFFGLGSETRETSTYVPDPYAIEIGNPEET 177 Database: arabidopsis Posted date: Oct 3, 2007 3:31 PM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.325 0.139 0.420 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,827,941 Number of Sequences: 28952 Number of extensions: 105912 Number of successful extensions: 255 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 253 Number of HSP's gapped (non-prelim): 5 length of query: 122 length of database: 12,070,560 effective HSP length: 73 effective length of query: 49 effective length of database: 9,957,064 effective search space: 487896136 effective search space used: 487896136 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 40 (21.6 bits) S2: 54 (25.8 bits)
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