GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001532-TA|BGIBMGA001532-PA|undefined
         (122 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    24   0.48 
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   2.5  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    20   5.9  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    20   5.9  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    20   5.9  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    20   7.8  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    20   7.8  

>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 23.8 bits (49), Expect = 0.48
 Identities = 8/14 (57%), Positives = 12/14 (85%)

Query: 8   YSVTFLCLWTIVVI 21
           Y+VTFLCL+  ++I
Sbjct: 286 YTVTFLCLYLFLII 299


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.4 bits (43), Expect = 2.5
 Identities = 8/19 (42%), Positives = 10/19 (52%)

Query: 59  DMEKTCQFLTNTKCPIPSG 77
           D+EK  Q     KCP+  G
Sbjct: 480 DLEKQRQQCNQNKCPVKRG 498


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 20.2 bits (40), Expect = 5.9
 Identities = 11/49 (22%), Positives = 24/49 (48%)

Query: 63  TCQFLTNTKCPIPSGQEVHFSLEILIEDDFPKNQQLTVEFIIEDQDNKP 111
           T Q ++NT  P  S   +HF  +  +  ++  +++ T +    +Q+  P
Sbjct: 265 TIQNVSNTIPPFASRGSMHFPNQYQMNQEYRTDRKHTQQHYQMNQNMYP 313


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 20.2 bits (40), Expect = 5.9
 Identities = 11/49 (22%), Positives = 24/49 (48%)

Query: 63  TCQFLTNTKCPIPSGQEVHFSLEILIEDDFPKNQQLTVEFIIEDQDNKP 111
           T Q ++NT  P  S   +HF  +  +  ++  +++ T +    +Q+  P
Sbjct: 213 TIQNVSNTIPPFASRGSMHFPNQYQMNQEYRTDRKHTQQHYQMNQNMYP 261


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 20.2 bits (40), Expect = 5.9
 Identities = 11/49 (22%), Positives = 24/49 (48%)

Query: 63  TCQFLTNTKCPIPSGQEVHFSLEILIEDDFPKNQQLTVEFIIEDQDNKP 111
           T Q ++NT  P  S   +HF  +  +  ++  +++ T +    +Q+  P
Sbjct: 396 TIQNVSNTIPPFASRGSMHFPNQYQMNQEYRTDRKHTQQHYQMNQNMYP 444


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
          protein.
          Length = 1464

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 11/36 (30%), Positives = 20/36 (55%)

Query: 4  LVRLYSVTFLCLWTIVVIQGTDVDKSHAIRHMHTKA 39
          +V + +V F+ L   VV +GT +  +  I+   T+A
Sbjct: 62 VVTIITVFFVVLGAAVVSKGTTLFMTSQIKKNVTRA 97


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
          CHS2 protein.
          Length = 1464

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 11/36 (30%), Positives = 20/36 (55%)

Query: 4  LVRLYSVTFLCLWTIVVIQGTDVDKSHAIRHMHTKA 39
          +V + +V F+ L   VV +GT +  +  I+   T+A
Sbjct: 62 VVTIITVFFVVLGAAVVSKGTTLFMTSQIKKNVTRA 97


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.325    0.139    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,185
Number of Sequences: 317
Number of extensions: 1070
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 122
length of database: 114,650
effective HSP length: 50
effective length of query: 72
effective length of database: 98,800
effective search space:  7113600
effective search space used:  7113600
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (21.1 bits)
S2: 39 (19.8 bits)