GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001532-TA|BGIBMGA001532-PA|undefined
         (122 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p...    27   0.84 
SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c...    26   1.5  
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    25   3.4  
SPCC645.13 |||transcription elongation regulator|Schizosaccharom...    24   7.8  
SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy...    24   7.8  

>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 27.1 bits (57), Expect = 0.84
 Identities = 10/22 (45%), Positives = 14/22 (63%)

Query: 92  FPKNQQLTVEFIIEDQDNKPLI 113
           FP++Q   VE +IED   KP +
Sbjct: 606 FPRDQSYVVEVVIEDTITKPFV 627


>SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 392

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 14/34 (41%), Positives = 19/34 (55%)

Query: 54  KLELGDMEKTCQFLTNTKCPIPSGQEVHFSLEIL 87
           K E   +EK  Q+LT TK PI  G   +  +EI+
Sbjct: 183 KEEQAIIEKVYQYLTETKQPIRKGDWSNREVEII 216


>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)

Query: 84   LEILIEDDFPKNQQLTVE-FIIEDQDNK 110
            L +  E DFPKNQQ   E F I+ + NK
Sbjct: 998  LRMYDEVDFPKNQQRNKEKFRIQKRPNK 1025


>SPCC645.13 |||transcription elongation
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)

Query: 73  PIPSGQEVHFSLEILIEDDFPKNQ 96
           P+PSG  V   L++L + D PK++
Sbjct: 591 PMPSGNSVPELLDLLPKVDLPKDR 614


>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 667

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 76  SGQEVHFSLEILIEDDFPKNQQLTVEFIIEDQDNKPLICAELPIV 120
           SG++V    EIL +++   N +       E+QD +PL+  E PIV
Sbjct: 47  SGKKVVNVFEILEKENNAINSEAEKSVSEEEQD-EPLVEGESPIV 90


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.325    0.139    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 557,740
Number of Sequences: 5004
Number of extensions: 21379
Number of successful extensions: 53
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 50
Number of HSP's gapped (non-prelim): 5
length of query: 122
length of database: 2,362,478
effective HSP length: 65
effective length of query: 57
effective length of database: 2,037,218
effective search space: 116121426
effective search space used: 116121426
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 49 (23.8 bits)