GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001532-TA|BGIBMGA001532-PA|undefined
         (122 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1313 - 32572594-32573793,32573827-32573832                       32   0.15 
09_06_0101 - 20864151-20864464,20864616-20864805,20865149-208653...    27   3.1  
02_01_0473 - 3403547-3404241,3404455-3404983,3405299-3405477,340...    27   4.1  
02_05_1074 - 33904518-33904697,33904886-33904985,33905085-339053...    26   7.2  
03_02_0481 + 8789890-8789949,8790325-8790441,8790532-8790601,879...    26   9.6  

>04_04_1313 - 32572594-32573793,32573827-32573832
          Length = 401

 Score = 31.9 bits (69), Expect = 0.15
 Identities = 19/60 (31%), Positives = 28/60 (46%)

Query: 58  GDMEKTCQFLTNTKCPIPSGQEVHFSLEILIEDDFPKNQQLTVEFIIEDQDNKPLICAEL 117
           G  EKTCQ   +   P  S + +H   E L    F   +QLT E ++E    + +  A+L
Sbjct: 5   GAAEKTCQARFDQLSPNLSKKRIHSLQEDLPAGQFASGEQLTDEEVVESAHTEQVHLAQL 64


>09_06_0101 -
           20864151-20864464,20864616-20864805,20865149-20865310,
           20866073-20866186
          Length = 259

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 9/24 (37%), Positives = 16/24 (66%)

Query: 56  ELGDMEKTCQFLTNTKCPIPSGQE 79
           ++GD+ +  Q+  N +CP  SGQ+
Sbjct: 92  QIGDVTRLMQYWNNIRCPSKSGQK 115


>02_01_0473 -
           3403547-3404241,3404455-3404983,3405299-3405477,
           3405868-3405952,3406136-3406482,3407061-3407159,
           3408135-3408636
          Length = 811

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 19  VVIQGTDVDKSHAIRHMHTKASAKAYLALFFP--VTYKLELGDMEKTCQF 66
           ++I GT+      IRH+ T+  A A L +  P   T        EKTC F
Sbjct: 504 LLIPGTNAWNEALIRHVATEEDANAILKIHVPNQETSDFPAWHYEKTCLF 553


>02_05_1074 -
          33904518-33904697,33904886-33904985,33905085-33905311,
          33905511-33908384,33908467-33908643,33908786-33909008,
          33909727-33909806,33910657-33910817,33910892-33910937,
          33911129-33911251,33911730-33911804,33911920-33912120
          Length = 1488

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 14/41 (34%), Positives = 20/41 (48%)

Query: 37 TKASAKAYLALFFPVTYKLELGDMEKTCQFLTNTKCPIPSG 77
          T+ASA  Y     P TY L L ++    +FL + +C    G
Sbjct: 9  TQASATEYYLHDLPSTYNLVLVEVVSRGRFLKSVRCKHDEG 49


>03_02_0481 +
           8789890-8789949,8790325-8790441,8790532-8790601,
           8790688-8790836,8791520-8791621,8791692-8791892,
           8792589-8792651,8792791-8793009,8793681-8793755,
           8794003-8794101,8794521-8794691
          Length = 441

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 17/77 (22%), Positives = 36/77 (46%), Gaps = 5/77 (6%)

Query: 24  TDVDKSHAIRHMHTKASAKAYLALFFPVTYKLELGDMEKTCQFLTNTKCPIPSGQEVHFS 83
           T  D   A  H H++++++ ++        + E  +  +T      T  P  +GQEVH+ 
Sbjct: 271 TSSDPKTAATHEHSRSTSEDHIFTNTSEPTRTETSEPTRT-----ETSEPTRNGQEVHYV 325

Query: 84  LEILIEDDFPKNQQLTV 100
            E++   D   + +L++
Sbjct: 326 GEVIHPFDAQADGELSI 342


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.325    0.139    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,331,076
Number of Sequences: 37544
Number of extensions: 119850
Number of successful extensions: 268
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 265
Number of HSP's gapped (non-prelim): 5
length of query: 122
length of database: 14,793,348
effective HSP length: 74
effective length of query: 48
effective length of database: 12,015,092
effective search space: 576724416
effective search space used: 576724416
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 54 (25.8 bits)