GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001532-TA|BGIBMGA001532-PA|undefined
         (122 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14698| Best HMM Match : E1_DerP2_DerF2 (HMM E-Value=4.1e-31)        33   0.049
SB_5273| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.086
SB_5544| Best HMM Match : APG9 (HMM E-Value=7e-09)                     27   3.2  
SB_27526| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-08)                 27   5.7  

>SB_14698| Best HMM Match : E1_DerP2_DerF2 (HMM E-Value=4.1e-31)
          Length = 167

 Score = 33.5 bits (73), Expect = 0.049
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 71  KCPIPSGQEVHFSLEILIEDDFPKNQQLTVEFIIEDQDNKPLICAE 116
           KCPI +G      L I + + +P + +L ++F ++  DNK + C E
Sbjct: 100 KCPINAGDSATLDLNIYVSNLYP-SLKLIIKFELKGGDNKLVFCGE 144


>SB_5273| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 150

 Score = 32.7 bits (71), Expect = 0.086
 Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 6/105 (5%)

Query: 19  VVIQGTDVDKSHA-IRHMHTKASAKAYLALFFPVTYKLELGDMEKTCQFLTNTKCPIPSG 77
           V+ +GT VD S   I H   K +  +  A+   +   L +      CQ      CP+ SG
Sbjct: 49  VLKRGTSVDGSLTFIPHEDLKRAKLSAHAIIDKLPLPLPIPS--DACQGY-GLSCPVDSG 105

Query: 78  QEVHFSLEILIEDDFPKNQQLTVEFIIEDQDNKPLI-CAELPIVI 121
            +  F +   IE +FP    LT++  + D D   ++ C E+ + I
Sbjct: 106 VKSMFKIHQAIESEFPVG-NLTLKAAVTDSDTSQVVFCFEVDLEI 149


>SB_5544| Best HMM Match : APG9 (HMM E-Value=7e-09)
          Length = 1288

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 4/82 (4%)

Query: 16  WTIVVIQGT---DVDKSHAIRHMHTKASAKAYLALFFPVTYKLELGDMEK-TCQFLTNTK 71
           W   V++G+   ++D    I  MH K +++ +   F  +    +    E  T  +L   +
Sbjct: 538 WASEVLKGSVSKELDSGTYIGPMHLKKASEIHRHSFRKIGDVRQAAREETITDSWLNAWR 597

Query: 72  CPIPSGQEVHFSLEILIEDDFP 93
           C IPSG  +  S E  ++   P
Sbjct: 598 CSIPSGDRITSSAEFAVKVGLP 619


>SB_27526| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-08)
          Length = 326

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 26  VDKSHAIRHMHTKASAKAYLAL-FFPVTYKLELG-DMEKTCQFLTNTKCPIPSGQEVHF 82
           +++ HAI+ M TK+   A  +     VT+ L +G     T    + TKC + S Q +HF
Sbjct: 53  IERHHAIKSM-TKSKLSAITSTRMILVTWLLSIGYACGWTLANPSETKCTLGSSQLIHF 110


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.325    0.139    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,042,604
Number of Sequences: 59808
Number of extensions: 154192
Number of successful extensions: 342
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 341
Number of HSP's gapped (non-prelim): 4
length of query: 122
length of database: 16,821,457
effective HSP length: 74
effective length of query: 48
effective length of database: 12,395,665
effective search space: 594991920
effective search space used: 594991920
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 54 (25.8 bits)