GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001532-TA|BGIBMGA001532-PA|undefined
         (122 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X67698-1|CAA47928.1|  151|Homo sapiens protein ( H.sapiens tissu...    35   0.061
BC002532-1|AAH02532.1|  151|Homo sapiens Niemann-Pick disease, t...    35   0.061
AK222474-1|BAD96194.1|  151|Homo sapiens Niemann-Pick disease, t...    35   0.061
BT006801-1|AAP35447.1|  544|Homo sapiens carnitine acetyltransfe...    29   3.0  
BC000723-1|AAH00723.1|  544|Homo sapiens carnitine acetyltransfe...    29   3.0  
AY496267-1|AAS45470.1| 1165|Homo sapiens RhoGTPase regulating pr...    29   3.0  
AY496266-1|AAS45469.1| 1168|Homo sapiens RhoGTPase regulating pr...    29   3.0  
AY496265-1|AAS45468.1| 1155|Homo sapiens RhoGTPase regulating pr...    29   3.0  
AY496264-1|AAS45467.1| 1155|Homo sapiens RhoGTPase regulating pr...    29   3.0  
AY496263-1|AAS45466.1| 1191|Homo sapiens RhoGTPase regulating pr...    29   3.0  
AB037812-1|BAA92629.1| 1194|Homo sapiens KIAA1391 protein protein.     29   3.0  
AF137378-1|AAD51919.2| 1188|Homo sapiens integrin alpha 11 subun...    29   4.0  
AF111799-1|AAL39001.1|  823|Homo sapiens MSTP018 protein.              29   4.0  
AF109681-1|AAF01258.1| 1189|Homo sapiens integrin alpha-11 subun...    29   4.0  

>X67698-1|CAA47928.1|  151|Homo sapiens protein ( H.sapiens tissue
           specific mRNA. ).
          Length = 151

 Score = 35.1 bits (77), Expect = 0.061
 Identities = 15/51 (29%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 72  CPIPSGQEVHFSLEILIEDDFPKNQQLTVEFIIEDQDNKPLICAELPIVIV 122
           CPI   +   +  ++ ++ ++P + +L VE+ ++D  N+ L C E+P+ IV
Sbjct: 99  CPIQKDKTYSYLNKLPVKSEYP-SIKLVVEWQLQDDKNQSLFCWEIPVQIV 148


>BC002532-1|AAH02532.1|  151|Homo sapiens Niemann-Pick disease, type
           C2 protein.
          Length = 151

 Score = 35.1 bits (77), Expect = 0.061
 Identities = 15/51 (29%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 72  CPIPSGQEVHFSLEILIEDDFPKNQQLTVEFIIEDQDNKPLICAELPIVIV 122
           CPI   +   +  ++ ++ ++P + +L VE+ ++D  N+ L C E+P+ IV
Sbjct: 99  CPIQKDKTYSYLNKLPVKSEYP-SIKLVVEWQLQDDKNQSLFCWEIPVQIV 148


>AK222474-1|BAD96194.1|  151|Homo sapiens Niemann-Pick disease, type
           C2 precursor variant protein.
          Length = 151

 Score = 35.1 bits (77), Expect = 0.061
 Identities = 15/51 (29%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 72  CPIPSGQEVHFSLEILIEDDFPKNQQLTVEFIIEDQDNKPLICAELPIVIV 122
           CPI   +   +  ++ ++ ++P + +L VE+ ++D  N+ L C E+P+ IV
Sbjct: 99  CPIQKDKTYSYLNKLPVKSEYP-SIKLVVEWQLQDDKNQSLFCWEIPVQIV 148


>BT006801-1|AAP35447.1|  544|Homo sapiens carnitine
           acetyltransferase protein.
          Length = 544

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 1/73 (1%)

Query: 36  HTKASAKAYLALFFPVTYKLELGDMEKTCQFLTNTKCPIPSGQEVHFSLEILIEDDFPKN 95
           H  + AKAY  L      +  +  ++K  + + +   P+P  +++ F++   I+ D  K 
Sbjct: 255 HRNSWAKAYNTLIKDKVNRDSVRSIQKKPELVRSPMVPLPMPKKLRFNITPEIKSDIEKA 314

Query: 96  QQLTVEFIIEDQD 108
           +Q  +  +I+D D
Sbjct: 315 KQ-NLSIMIQDLD 326


>BC000723-1|AAH00723.1|  544|Homo sapiens carnitine
           acetyltransferase protein.
          Length = 544

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 1/73 (1%)

Query: 36  HTKASAKAYLALFFPVTYKLELGDMEKTCQFLTNTKCPIPSGQEVHFSLEILIEDDFPKN 95
           H  + AKAY  L      +  +  ++K  + + +   P+P  +++ F++   I+ D  K 
Sbjct: 255 HRNSWAKAYNTLIKDKVNRDSVRSIQKKPELVRSPMVPLPMPKKLRFNITPEIKSDIEKA 314

Query: 96  QQLTVEFIIEDQD 108
           +Q  +  +I+D D
Sbjct: 315 KQ-NLSIMIQDLD 326


>AY496267-1|AAS45470.1| 1165|Homo sapiens RhoGTPase regulating
           protein variant ARHGAP20-1be protein.
          Length = 1165

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 2/93 (2%)

Query: 16  WTIVVIQGTDVDKSHAIRHM--HTKASAKAYLALFFPVTYKLELGDMEKTCQFLTNTKCP 73
           W  V+ QG D +K + ++ +      +    L   F V + +E               C 
Sbjct: 428 WVSVMDQGNDEEKINTVQRLLDQLPRANVVLLRYLFGVLHNIEQHSSSNQMTAFNLAVCV 487

Query: 74  IPSGQEVHFSLEILIEDDFPKNQQLTVEFIIED 106
            PS      S    +E++F K   L ++F+IE+
Sbjct: 488 APSILWPPASSSPELENEFTKKVSLLIQFLIEN 520


>AY496266-1|AAS45469.1| 1168|Homo sapiens RhoGTPase regulating
           protein variant ARHGAP20-1c protein.
          Length = 1168

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 2/93 (2%)

Query: 16  WTIVVIQGTDVDKSHAIRHM--HTKASAKAYLALFFPVTYKLELGDMEKTCQFLTNTKCP 73
           W  V+ QG D +K + ++ +      +    L   F V + +E               C 
Sbjct: 431 WVSVMDQGNDEEKINTVQRLLDQLPRANVVLLRYLFGVLHNIEQHSSSNQMTAFNLAVCV 490

Query: 74  IPSGQEVHFSLEILIEDDFPKNQQLTVEFIIED 106
            PS      S    +E++F K   L ++F+IE+
Sbjct: 491 APSILWPPASSSPELENEFTKKVSLLIQFLIEN 523


>AY496265-1|AAS45468.1| 1155|Homo sapiens RhoGTPase regulating
           protein variant ARHGAP20-1e protein.
          Length = 1155

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 2/93 (2%)

Query: 16  WTIVVIQGTDVDKSHAIRHM--HTKASAKAYLALFFPVTYKLELGDMEKTCQFLTNTKCP 73
           W  V+ QG D +K + ++ +      +    L   F V + +E               C 
Sbjct: 418 WVSVMDQGNDEEKINTVQRLLDQLPRANVVLLRYLFGVLHNIEQHSSSNQMTAFNLAVCV 477

Query: 74  IPSGQEVHFSLEILIEDDFPKNQQLTVEFIIED 106
            PS      S    +E++F K   L ++F+IE+
Sbjct: 478 APSILWPPASSSPELENEFTKKVSLLIQFLIEN 510


>AY496264-1|AAS45467.1| 1155|Homo sapiens RhoGTPase regulating
           protein variant ARHGAP20-1d protein.
          Length = 1155

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 2/93 (2%)

Query: 16  WTIVVIQGTDVDKSHAIRHM--HTKASAKAYLALFFPVTYKLELGDMEKTCQFLTNTKCP 73
           W  V+ QG D +K + ++ +      +    L   F V + +E               C 
Sbjct: 418 WVSVMDQGNDEEKINTVQRLLDQLPRANVVLLRYLFGVLHNIEQHSSSNQMTAFNLAVCV 477

Query: 74  IPSGQEVHFSLEILIEDDFPKNQQLTVEFIIED 106
            PS      S    +E++F K   L ++F+IE+
Sbjct: 478 APSILWPPASSSPELENEFTKKVSLLIQFLIEN 510


>AY496263-1|AAS45466.1| 1191|Homo sapiens RhoGTPase regulating
           protein variant ARHGAP20-1ad protein.
          Length = 1191

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 2/93 (2%)

Query: 16  WTIVVIQGTDVDKSHAIRHM--HTKASAKAYLALFFPVTYKLELGDMEKTCQFLTNTKCP 73
           W  V+ QG D +K + ++ +      +    L   F V + +E               C 
Sbjct: 454 WVSVMDQGNDEEKINTVQRLLDQLPRANVVLLRYLFGVLHNIEQHSSSNQMTAFNLAVCV 513

Query: 74  IPSGQEVHFSLEILIEDDFPKNQQLTVEFIIED 106
            PS      S    +E++F K   L ++F+IE+
Sbjct: 514 APSILWPPASSSPELENEFTKKVSLLIQFLIEN 546


>AB037812-1|BAA92629.1| 1194|Homo sapiens KIAA1391 protein protein.
          Length = 1194

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 2/93 (2%)

Query: 16  WTIVVIQGTDVDKSHAIRHM--HTKASAKAYLALFFPVTYKLELGDMEKTCQFLTNTKCP 73
           W  V+ QG D +K + ++ +      +    L   F V + +E               C 
Sbjct: 457 WVSVMDQGNDEEKINTVQRLLDQLPRANVVLLRYLFGVLHNIEQHSSSNQMTAFNLAVCV 516

Query: 74  IPSGQEVHFSLEILIEDDFPKNQQLTVEFIIED 106
            PS      S    +E++F K   L ++F+IE+
Sbjct: 517 APSILWPPASSSPELENEFTKKVSLLIQFLIEN 549


>AF137378-1|AAD51919.2| 1188|Homo sapiens integrin alpha 11 subunit
           precursor protein.
          Length = 1188

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)

Query: 68  TNTKCPIPSGQEV--HFSLEILIEDDFPKNQQLTVEFIIEDQDNKPLI 113
           TN    + SGQE+    +  +L   D+ K    +VE+ +ED D+ P++
Sbjct: 716 TNRAVLLSSGQELCERINFHVLDTADYVKPVTFSVEYSLEDPDHGPML 763


>AF111799-1|AAL39001.1|  823|Homo sapiens MSTP018 protein.
          Length = 823

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)

Query: 68  TNTKCPIPSGQEV--HFSLEILIEDDFPKNQQLTVEFIIEDQDNKPLI 113
           TN    + SGQE+    +  +L   D+ K    +VE+ +ED D+ P++
Sbjct: 351 TNRAVLLSSGQELCERINFHVLDTADYVKPVTFSVEYSLEDPDHGPML 398


>AF109681-1|AAF01258.1| 1189|Homo sapiens integrin alpha-11 subunit
           precursor protein.
          Length = 1189

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)

Query: 68  TNTKCPIPSGQEV--HFSLEILIEDDFPKNQQLTVEFIIEDQDNKPLI 113
           TN    + SGQE+    +  +L   D+ K    +VE+ +ED D+ P++
Sbjct: 716 TNRAVLLSSGQELCERINFHVLDTADYVKPVTFSVEYSLEDPDHGPML 763


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.325    0.139    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,276,347
Number of Sequences: 224733
Number of extensions: 629532
Number of successful extensions: 4485
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 4482
Number of HSP's gapped (non-prelim): 14
length of query: 122
length of database: 73,234,838
effective HSP length: 81
effective length of query: 41
effective length of database: 55,031,465
effective search space: 2256290065
effective search space used: 2256290065
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 59 (27.9 bits)