GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001532-TA|BGIBMGA001532-PA|undefined
         (122 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70858-4|AAB09178.1|  294|Caenorhabditis elegans Serpentine rece...    27   4.9  
U41263-2|ABB88212.1| 1015|Caenorhabditis elegans Hypothetical pr...    26   6.5  
U41263-1|AAC24429.1| 1028|Caenorhabditis elegans Hypothetical pr...    26   6.5  
U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical pr...    26   6.5  

>U70858-4|AAB09178.1|  294|Caenorhabditis elegans Serpentine
           receptor, class x protein33 protein.
          Length = 294

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)

Query: 34  HMHTKASAKAYLALFFPVTYK 54
           H H  +S   ++A+FFP +YK
Sbjct: 92  HTHFLSSVNRFIAVFFPFSYK 112


>U41263-2|ABB88212.1| 1015|Caenorhabditis elegans Hypothetical
           protein T19D12.4b protein.
          Length = 1015

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 61  EKTCQFLTNTKCPIPSGQEVHFSLEI 86
           E T Q LT   CP+P     ++++EI
Sbjct: 542 EITAQILTTYPCPVPKCVTAYYAIEI 567


>U41263-1|AAC24429.1| 1028|Caenorhabditis elegans Hypothetical
           protein T19D12.4a protein.
          Length = 1028

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 61  EKTCQFLTNTKCPIPSGQEVHFSLEI 86
           E T Q LT   CP+P     ++++EI
Sbjct: 555 EITAQILTTYPCPVPKCVTAYYAIEI 580


>U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical protein
            K10C2.1 protein.
          Length = 2314

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 3/65 (4%)

Query: 3    VLVRLYSVTFLCLWTIVVIQGTDVDKSHAIRHMHTKASAKAYLALFFPVTYKLELGDMEK 62
            V   L+  T L  WT       ++++++  +H  T +      A  +P+ + +  GD++ 
Sbjct: 1487 VRTALHIPTSLPYWTDC---NDNMNENYIQQHNDTSSVFTDIFATGYPLRFLIYNGDVDM 1543

Query: 63   TCQFL 67
             CQFL
Sbjct: 1544 ACQFL 1548


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.325    0.139    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,043,385
Number of Sequences: 27539
Number of extensions: 117318
Number of successful extensions: 307
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 304
Number of HSP's gapped (non-prelim): 4
length of query: 122
length of database: 12,573,161
effective HSP length: 73
effective length of query: 49
effective length of database: 10,562,814
effective search space: 517577886
effective search space used: 517577886
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 54 (25.8 bits)