GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001531-TA|BGIBMGA001531-PA|IPR000276|Rhodopsin-like GPCR
superfamily
         (364 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0300 + 2350232-2352274,2352349-2352669,2352752-2352838,235...    30   2.5  
03_01_0502 - 3779551-3779562,3779863-3780012,3780129-3780172,378...    30   3.3  
10_01_0171 + 1917520-1918056,1919201-1919336,1921873-1922060,192...    29   5.8  
03_01_0448 - 3444608-3444814,3446419-3446497,3446567-3446691,344...    29   7.7  

>03_01_0300 +
           2350232-2352274,2352349-2352669,2352752-2352838,
           2353031-2353708,2353800-2353964,2354139-2354433,
           2354581-2354795,2354885-2355190,2355269-2355332,
           2355426-2355665,2355783-2355886
          Length = 1505

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 1/76 (1%)

Query: 247 FYTERWQEQAYTTLSLVFMFILPLIILVSTYVSTVRTIAQSEKVFKPEVRRQEKYFTPDM 306
           ++ + W       L+L  ++    I +VST V+TV +IA S  V K +   Q+K      
Sbjct: 423 YFHDIWMLPLQIILALAILYKNVGIAMVSTLVATVLSIAASVPVAKLQEHYQDKLMASKD 482

Query: 307 NRRRLIDRAKMKSLRM 322
            R R      +K++R+
Sbjct: 483 ERMRKTSEC-LKNMRI 497


>03_01_0502 -
           3779551-3779562,3779863-3780012,3780129-3780172,
           3780256-3780319,3780422-3780655,3780765-3780908,
           3781027-3781221,3781447-3781522,3781689-3781788,
           3781955-3781988,3782076-3782160,3782226-3782290,
           3782380-3782478,3782810-3782875,3785485-3785721
          Length = 534

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 3/72 (4%)

Query: 168 KFLQMLALYLSTFVLVLIGVDRWLAVKYPMKSMATATRSGRLVIIAWVLSVILSIPQAVV 227
           K ++ + L L  F+ V + V    +V + + +   ATR G   +   VL++ + IPQ VV
Sbjct: 427 KSIKAVCLVLFAFLGVPLAV--LYSVPFAVTAQLAATRGGGQGLCTGVLNISIVIPQ-VV 483

Query: 228 FRVAKGPFFEEF 239
             +  GP+ E F
Sbjct: 484 IALGAGPWDELF 495


>10_01_0171 +
           1917520-1918056,1919201-1919336,1921873-1922060,
           1922491-1922694,1923913-1924425
          Length = 525

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 16/70 (22%), Positives = 36/70 (51%)

Query: 270 LIILVSTYVSTVRTIAQSEKVFKPEVRRQEKYFTPDMNRRRLIDRAKMKSLRMSVVIVAA 329
           +I+++    S +  I   +++FKP + + E+ F P + R    +   M +++   VI + 
Sbjct: 265 IIVILILRRSGIICIGALKEIFKPPIFKHERSFRPPVLRIENGNDGSMITIQHGQVINSG 324

Query: 330 FLIWWTPYYV 339
             I  TP+++
Sbjct: 325 IWIIKTPFHI 334


>03_01_0448 -
           3444608-3444814,3446419-3446497,3446567-3446691,
           3446765-3446809,3447070-3447165,3447344-3447417,
           3447526-3447649,3447975-3448109,3448206-3448535,
           3448610-3448762,3448840-3449391,3449569-3449648,
           3450395-3450506,3450579-3450749,3450820-3450879
          Length = 780

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 7/58 (12%)

Query: 190 WLAVKYPMKSMATATRSGRLVIIAWVLSVILSIPQAVVFRVAKGPFFEEFHQCVTHGF 247
           WLA +Y +KS     +   L I  W +  IL IP       A+GP   +    +T  +
Sbjct: 168 WLADRYDVKSQTILIQDKSLPITLWDVQCILDIP-------AEGPVISKLPPLITEDY 218


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.329    0.139    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,555,172
Number of Sequences: 37544
Number of extensions: 348066
Number of successful extensions: 949
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 947
Number of HSP's gapped (non-prelim): 4
length of query: 364
length of database: 14,793,348
effective HSP length: 83
effective length of query: 281
effective length of database: 11,677,196
effective search space: 3281292076
effective search space used: 3281292076
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 61 (28.7 bits)