GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001531-TA|BGIBMGA001531-PA|IPR000276|Rhodopsin-like GPCR
superfamily
         (364 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g06210.1 68416.m00714 expressed protein contains Prosite PS00...    33   0.40 
At5g38630.1 68418.m04672 cytochrome B561 family protein contains...    29   6.4  
At3g59520.1 68416.m06642 rhomboid family protein contains Pfam p...    29   6.4  
At3g55310.1 68416.m06143 short-chain dehydrogenase/reductase (SD...    29   6.4  
At1g20530.1 68414.m02558 hypothetical protein                          28   8.5  

>At3g06210.1 68416.m00714 expressed protein contains Prosite
           PS00616: Histidine acid phosphatases phosphohistidine
           signature;
          Length = 840

 Score = 32.7 bits (71), Expect = 0.40
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 4/95 (4%)

Query: 252 WQEQAYTTLSLVFMFILPLIILVSTYVSTVRTIAQ-SEKVFKPEVRRQEKYFTPDMNRRR 310
           WQ QA  T+S V   I    +L S+ +S +R + + S+ +FKP +    +  T  + R+ 
Sbjct: 137 WQHQATWTVSGVG--ISSFRVLQSSSISLLRNLKRISDGIFKPILDNGLREATTRIGRQE 194

Query: 311 LIDRAKMKSLRMSVVIVAAFLIW-WTPYYVMMIIF 344
           + DR    + + S V +  +  W +   YV  I++
Sbjct: 195 IFDRRTTLTWKNSEVPLLPYARWLYISSYVSRILY 229


>At5g38630.1 68418.m04672 cytochrome B561 family protein contains
           Pfam domain, PF03188: Cytochrome b561
          Length = 230

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 9/67 (13%)

Query: 130 IFQLSIADLLVTIFCIAGEAAWSF-AVQWYAGNIGCKLFKFLQMLALYLSTFVLVLIGVD 188
           IF +    +++ +    GEA  ++ +VQ      G K  K L  L L L+ F+L LIGV 
Sbjct: 47  IFNVHPVMMVIGLILFNGEAMLAYKSVQ------GTKNLKKLVHLTLQLTAFILSLIGV- 99

Query: 189 RWLAVKY 195
            W A+K+
Sbjct: 100 -WAALKF 105


>At3g59520.1 68416.m06642 rhomboid family protein contains Pfam
           profile PF01694: Rhomboid family
          Length = 269

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 10/104 (9%)

Query: 123 WTAIYSLIFQLSIADLLVTIFCIAGEAAWSFAVQWYAGNIGCKLFKFLQ-MLALYLSTFV 181
           W  I S +  +S+  L+  +      A WS  V    G++G     +L   L L + + V
Sbjct: 52  WRMITSALSHISVLHLVFNM-----SALWSLGVVEQLGHVGLGTAYYLHYTLVLVVFSGV 106

Query: 182 LVLIGVDRWLAVKYPMKSMATATRSG-RLVIIAWVLSVILSIPQ 224
           LV IG+   L  ++ +      T  G   V+  W+   ILS+ Q
Sbjct: 107 LV-IGIYHLLIARFKIDYFRRVTAVGYSCVVFGWM--TILSVKQ 147


>At3g55310.1 68416.m06143 short-chain dehydrogenase/reductase (SDR)
           family protein contains similarity to
           3-oxoacyl-[acyl-carrier protein] reductase SP:P51831
           from [Bacillus subtilis]
          Length = 298

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 14/44 (31%), Positives = 21/44 (47%)

Query: 190 WLAVKYPMKSMATATRSGRLVIIAWVLSVILSIPQAVVFRVAKG 233
           WL  KY    M  A R G ++ I+ V  V   +P  + +  +KG
Sbjct: 156 WLVAKYVCVLMRDAKRGGSVINISSVAGVRSIVPGGLAYSCSKG 199


>At1g20530.1 68414.m02558 hypothetical protein
          Length = 614

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 15/47 (31%), Positives = 25/47 (53%)

Query: 279 STVRTIAQSEKVFKPEVRRQEKYFTPDMNRRRLIDRAKMKSLRMSVV 325
           ST++ +   EK    EV+ +EK  T  M   +L+ R + KS  +S +
Sbjct: 310 STLKKLFMWEKKLYQEVKAEEKLRTSHMKNYKLLRRLEAKSADLSKI 356


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.329    0.139    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,962,513
Number of Sequences: 28952
Number of extensions: 298459
Number of successful extensions: 821
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 818
Number of HSP's gapped (non-prelim): 6
length of query: 364
length of database: 12,070,560
effective HSP length: 82
effective length of query: 282
effective length of database: 9,696,496
effective search space: 2734411872
effective search space used: 2734411872
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 60 (28.3 bits)