Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001530-TA|BGIBMGA001530-PA|IPR003931|Calcium-activated
SK potassium channel, IPR011996|SK channel region, IPR013099|Ion
transport 2, IPR004178|Calmodulin-binding
         (655 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    28   0.21 
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    27   0.49 
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    27   0.49 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    24   4.5  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   6.0  

>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 28.3 bits (60), Expect = 0.21
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 173 TWTTKLANKGGVIGVEVVPYDVTLSLPMFFRLY 205
           +WT  +  KG +    V  Y++T S P+  +LY
Sbjct: 96  SWTNNIFPKGELFDATVFTYNITNSTPLLKKLY 128


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 27.1 bits (57), Expect = 0.49
 Identities = 10/33 (30%), Positives = 18/33 (54%)

Query: 173 TWTTKLANKGGVIGVEVVPYDVTLSLPMFFRLY 205
           +WT  +  +G +    V  Y++T S P+  +LY
Sbjct: 193 SWTNNIFPRGELFDATVFTYNITNSTPLLKKLY 225


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 27.1 bits (57), Expect = 0.49
 Identities = 10/33 (30%), Positives = 18/33 (54%)

Query: 173 TWTTKLANKGGVIGVEVVPYDVTLSLPMFFRLY 205
           +WT  +  +G +    V  Y++T S P+  +LY
Sbjct: 208 SWTNNIFPRGELFDATVFTYNITNSTPLLKKLY 240


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.8 bits (49), Expect = 4.5
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 5/58 (8%)

Query: 275 DEDHANLLNSMWLTAITFLCVGYGDIVPNTYCGRGITLTCGMVASQGLLLIMVLTKLA 332
           +ED  NL +++W      L  G G+  P ++  R      GMV + G  +I+V +  A
Sbjct: 604 EEDALNLSSAVWFAWGVLLNSGIGEGTPRSFSAR----VLGMVWA-GFAMIIVASYTA 656


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.4 bits (48), Expect = 6.0
 Identities = 10/44 (22%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 443 TKKLKNAAANVLRETWLIYKHTRLVKRVHPGRVRTHQRKFLLAI 486
           +K+  N    ++++  L+Y H RL+ +        H +++L++I
Sbjct: 203 SKECSNQEYEIMKDNLLLYNHARLMSQ------DNHSKEYLVSI 240


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.134    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,510
Number of Sequences: 429
Number of extensions: 5748
Number of successful extensions: 21
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 5
length of query: 655
length of database: 140,377
effective HSP length: 62
effective length of query: 593
effective length of database: 113,779
effective search space: 67470947
effective search space used: 67470947
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 47 (23.0 bits)