GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001530-TA|BGIBMGA001530-PA|IPR003931|Calcium-activated
SK potassium channel, IPR011996|SK channel region, IPR013099|Ion
transport 2, IPR004178|Calmodulin-binding
         (655 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    31   0.033
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    31   0.033
AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    27   0.41 
AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory recept...    25   1.2  
AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory recept...    25   1.2  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    24   2.9  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    23   5.0  

>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 30.7 bits (66), Expect = 0.033
 Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)

Query: 582 SVAPESGAATVSTNPLGSR-EHDSSLSNTSPAAAFKP 617
           S   E+ AA  S++P GS  +H SS ++TSPAA   P
Sbjct: 26  SATTEAPAAYSSSSPSGSSPQHSSSSASTSPAARMYP 62


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 30.7 bits (66), Expect = 0.033
 Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)

Query: 582 SVAPESGAATVSTNPLGSR-EHDSSLSNTSPAAAFKP 617
           S   E+ AA  S++P GS  +H SS ++TSPAA   P
Sbjct: 26  SATTEAPAAYSSSSPSGSSPQHSSSSASTSPAARMYP 62


>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 27.1 bits (57), Expect = 0.41
 Identities = 13/68 (19%), Positives = 33/68 (48%)

Query: 481 KFLLAIYALRKVKMDQRKLMDNANTITDMAKTQNTVYEIVSDMSTRQDTIEERLTSLEEK 540
           ++++ +Y L+ V +   +L   A  +TD+ +  N+  +++  +    D  +ER   +   
Sbjct: 285 RYVMVVYLLKNVVLYGLELFILAKIVTDLCQEANSTKKLIVKIKIDIDKEDERNEVISSA 344

Query: 541 LTTLQEQV 548
           L   Q ++
Sbjct: 345 LKLSQNEL 352


>AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory receptor
           candidate 13 protein.
          Length = 390

 Score = 25.4 bits (53), Expect = 1.2
 Identities = 11/27 (40%), Positives = 18/27 (66%)

Query: 310 ITLTCGMVASQGLLLIMVLTKLALSRE 336
           + L CG V S+ + ++ VL K+AL R+
Sbjct: 306 LILQCGRVRSEVVKILNVLKKIALRRQ 332


>AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory receptor
           candidate 12 protein.
          Length = 316

 Score = 25.4 bits (53), Expect = 1.2
 Identities = 11/27 (40%), Positives = 18/27 (66%)

Query: 310 ITLTCGMVASQGLLLIMVLTKLALSRE 336
           + L CG V S+ + ++ VL K+AL R+
Sbjct: 232 LILQCGRVRSEVVKILNVLKKIALRRQ 258


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 24.2 bits (50), Expect = 2.9
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 428 RAEKHVHNFMMETQLTKKLKNAAANVLRET 457
           R ++  HN     + + KLKN +A +L +T
Sbjct: 125 RQQQKQHNQQQSVEKSSKLKNKSAPILTKT 154


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 5.0
 Identities = 15/73 (20%), Positives = 29/73 (39%)

Query: 427 TRAEKHVHNFMMETQLTKKLKNAAANVLRETWLIYKHTRLVKRVHPGRVRTHQRKFLLAI 486
           T   + V N++ +  +  +  N     LR+ +   K  R+   +        + KFL  I
Sbjct: 448 TEVREFVVNYIDDLLVASETLNEHLEHLRQVFEKLKQARMTINLEKSNFIQKEVKFLGHI 507

Query: 487 YALRKVKMDQRKL 499
             +  +K D  K+
Sbjct: 508 LTINGIKADPEKI 520


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.323    0.134    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,298
Number of Sequences: 317
Number of extensions: 4774
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 7
length of query: 655
length of database: 114,650
effective HSP length: 61
effective length of query: 594
effective length of database: 95,313
effective search space: 56615922
effective search space used: 56615922
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 46 (22.6 bits)